Cucsat.G11786.T9 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G11786.T9
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	DNA-directed RNA polymerase III subunit RPC5 isoform X1
Location	ctg1820: 5169293 .. 5177724 (+)
RNA-Seq Expression	Cucsat.G11786.T9
Synteny	Cucsat.G11786.T9

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCTGAAATTATTTTTGAAAGAAAAAGAGAAAGTAAAGGGAAAATTACTTAGAAAAATAACGAAAATAAACCTAAAAAAAGAGCATACAGAAAATTTATGGGTGCGGCGGTCTAAGTTATCTCTCCGCCGGAGCAGTTGGTGGTTGCGGAAAGAAAAAACTTCGATTGCATATTCTCTAGTGTCCGATAAGCTTTTCGCTGCTGATTCACCAAGAGGAAGGAGCACGTCAAAAACCTTTCAGGATGGACCTGGACGGCCTAGACGAAGGGAGCCAGGTACCATCACGGACCTCCAGATTCGCACCCAAGTCCTCTAAATTCAAGCCGAAACCAAAATCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCTAACGAAGTTGGAACCTCAACCTCCCATTTCTAAGCCGGAAGTTGTAGAGCCTGATGCTCGAGTTGAGGAGAAGAAGGAAGACGGTGAAGAAGTAGAAGTAAAACCTAAAGTTGAATCCTCACTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGTCGGAAGTTGAAGAGGATGCAATGGTGGATGATGATCCAATTGAAGAGGATGCTTCTGAAGATATGGTTGTTCGTGAAATCGACGTTCTATTTACTCCTTCAGTTGATAGCAATTCGAAAGTTAGTCTTCTTTGCCTTTGTCTTTCATACCTTGTACCATTATTTAGTTCTTTTTGAAATTTTAACTTGACTGTCATCTATTTCCAGTTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTCGAGGGGCGATGTGACGAGGTGAGCATTTTCTTTAATTCCTTATTATTCTGGAAGAATTTGAACTGTACTCTTTTAGTTTCAACAGGTAAGAGTTAAACCTAGCACTGGAGAAGTGGAAGTCGACCTGAATGTTGATATTGAATCCAATAACTATGACAACAAAGCTGATGGCACATTCCAAATGAAGAAGCAGGTATCTTCTCTTACTGTTCTGTTGATTTAAATTGCTGCGAATTCATGCATATTTGGCTATTTATTAGGATTACTAGTCTGGTTCATCTGTGTGATTGAACTTGCAGATCATGTCAGGTTTAACTTGAAAAAACATGCTACATTCGTTAGGATTTTCCCAAAAGATAAAACAGTGATAGTTCATTGAAACCGAATTCAGCAACAGTTTCTAGTTGAATCTTCTTTCTTTTCTTTCTTTTTTTCCCGTCGTATTATCCTTGAGTTTCTTTTCACTTTATCAACTTAACTATGTTTCACCTATTAATTAGTCATGGGCTATTTCTTTCATGTACTATATTCAACAGAGGATTGATTTATTGGCAGTGTATTTTTGTGGATACCAATAAAATTTTGTTTTTGGTTCAGACTTTGACATCTTCATGGCAACCGCCTCTAGCTACGTCCTATGCTGTTGGTCTGCTTATGGGCAATAAGGTTGCTTCTCTCTATCTCATATCTTTTGAACTGCACACCTTTTCTTTTCTTCTTCTTCTTTTTATGATTGACATTGAATCAACCGTAGTTAATGGACCCTTAGTTTCTTCATTGTTCTAGCACTCAGTCATTTTTAATTTTGAATCAGAAAACATAAGCGTAGTGGTAAGCAAGAATAATAAAGTTCTTGGAGGAAATAGGTTCAAGCCACGGTGGCCTTACCTTAGATTTAATATACTACGAGCTTTATTAACAATGAAATGTAGTAGGGTTAGACAGGGTCCTATGAGAATAGACAAGGTACACAAATGACACGGACTCTCACATAAATAGAAAAGAATAATATTGAAATATTAAGTAACCATGAATAAAAGGTTTCCATAAAAGTTTTGATTATTGGAAGAATAGTTACAAACACTTCTTACGTATTACAATATGAGCTCACATTTCGCTTAACAATATCATATTTATCTACCAAAGAAGGTTGTTTGCCTTAAAATAAATGTTGATTATTATTCAACTTATTGCCTCCTCAAAATTGACTTGACCGTCTATATTCTTAAATTTTGTCTTCTTAAAACTTTGATGGTGAAGGAAATGGAAAATATGTAAAATCTTGGCATATGTTGCCTTTTTCTCAAAAGGAAACAACAGATATTTTGGTCTTTTGTTGTCATTGTTTGGATATTTTTCTTTTGTTTTACTAAGGAGAAGGGATTCTTGTTCATGAGGCCTTGATCCTGTGGTGGGGTTTTCTTGCAAATACTTTTTTTGTTGTTTAGTGGAACACTTTTTTGTTGCTATGAAAGATTAAAATTTCTTGAAGGTTATATTTTTATTCCAGAAGTTCTTCACAGTAGAGTTTATACTTTAGATCACATTATGAGGATCTTATACTGTTGTATCTGTAATTGTTTGAATGGAAAACCTAGATTTTGTACTTGGTCAAATTGGTCCTTTTCTTCTAACTAATTAGCATGAACGCAAGAGGATCATAGGTTTCTGCTTATTCCCCTAATCTTATGATGGTCATCAAATCATTTGTCAAATTTTAGAACAAGGACCTGTTTGTTTAGTTTTCCTTTAAAAGTAAATAACTATTGCTAATGTATCTATGTGTTATATTGCAGCTACACCTGAATCCCGTACATGCAGTTGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCGAAAAGGAAAAATAATGTTAGAGCTGATTCAGATGTTAAGTCAGAAGAGCATGTGGATGTTAATTCTGCAGGTGCATCAAGGAAGCAGGTTATTTTCTATTTTTTCTATTCCATTCTAAAGTACTGCTGAAATATAGTGAATTTTATCTTGGGAAATCTGCCAAGTCGCTGATCGTGTTTATTTGGTAACTGTAAAGTATAATCATAATAACAATTATTGTTATTATTTTATAGGGAACACAATCATTTAATAGCTAGAAACCTCTGGGGCTATGCTGGTAGAGCTTTCCTTGGCTTTGTTGGATGGAAAGGAACAAAAGTTTTATTTGAAGAGAAGTTACTGATTTTATTTCTTTTTGTGGCAACTTTCAGCTATTAGCCTCTTGGTTGTGTCACACTTACAATCAATCCTTTTTAATTACTTTTGTTTAGGCTTTGTTTGATAACAATTTTATTTTCAGTTTTTGGAAACTAAGTATATTTCTAACACGACTTTCATCTTTCTGGACTAAAAGAGTTGAATTCTTAGCCAAATTTCGAAAATTATAACAATTTTTTAGAAACTATTGTTGGCTGTCAGAAGGGTATTTACCTTTACCCGGAAGACTTTTTTTTTCTTTTTTTGCAACTTACCTTATTCCTTTGAATGGTCTATTCTTAGTTTATTTATTTATTTATTTTATCATTAACTTACTGTCTACTGACCTTATCATTGTATTGCATTGGTTCACATCTGGGATTACATATTTTGTTCTGGTATTTATGGATTTTTGTATTGTTTCTATGGAACAGAAGAAGCAAACAGGACCTTCAACGGAAGTTAAAACTAGAGATGAGGAGGTAACACCATTGAAAATGAGTGCTCAATAGTGTAGGTTTAAGATTGTTTCTGAGAAAGTATTTTTTAGTGGGAGTTTCTTCCCCTGCACTTGTAGAAGAATTACTTATTAAGTGATGCTTCTAAAAGCAGCTTTAGTGCTTTCTAAGTGTTAGGTTTTTCAACATTTTTTTAAACTATGGAATGACATACCTTGAAAATTTTGAAATATGTTTTCAATGAACAAAAAAATGAGACATGATCCTACTAACTAATTAAGAGATCATGGGTTCATTCCATGGTGGCCACCTACCTCGAAATTAATTTCCTAGACACTCAAAGGTTGTAAGGTTAGGTGGGTTGTTCCGTATGATTAGTGAGATGCGTGTAAGCTGGTCCAAACACTTACGAATATTAAAAGAAAATTGACAAATGAAAACTATTACTCAAAGTACAAGGAAACATAACTCAAAGTACTTATCCTTGAGATAATGAAAAGAGACTATTTCTCAAAGTACAAGGGAACAAATGAAAACGTGTAGATTTAAACAATCAAAGACACGACTATCAACCTTAGGTATGATTGCCTTACTGTTAAATCCATCATTTTATAGTCGTCTAAAATTGTTTTGTTCACTTTTTCTCTCTAGTGCTGGATTCCACTCAAGTACTATGGCTTAGAGAGTGATCTATCAACCAGACATCTGCAAAGCATGGTGTCACAAACAGTTTCCCCTATGCAATTTTCAATGAGTCCGTATGTGTTTTTTGCTTGTTTATGTATTAAATCTTTAATACAGTAAATTTCATCTATCTGATAATTTTTCTTTTGAGTATTTGATTTGGTTCCTACTTATTTAAGGCACGACTATATGGACTCCTTGTGTCCTGGTACGAGTACAAGCGGCAACAAGCCCAAAGGTCCATCTAAAAAGTAAATACAATTACATATTCAGCTGTTTAATTTATGTTACCGAACATTTAAGTTGTCAGGCAACTGGTTGCAAGAAGTTGTCGGGGAGACTTCTAGTATTGATTAATGTTTTAATCCTACTTATGGGCATTTCAGGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACCGAGGTTTGTTTTAAATGAATACTTGTAAAAAAATTATTTCTGATGCATTTGCACATCTACTATAGCATCTAACTTCTATGCATTATTTGTTGGACGTATATTCCATCTTTTATGGTTTCATATTCATCAAACATTTTTTATTATCATTTAACTTACTGTCAAATTTAAGTTATTAGTATCTCTTTTTTAGTATTCGGGTCTTGAGAAAACTGTGACCTTATTACAAGAAAACTTTTAGTATATTGTGTGATCCTACTACATTTAGTTGTCAAGAAAACTTGTAGGATATTAAATCCTAGGTTGACTATAATTTGAACTTATTTTTTCTATGTTCTACTGTTTTCATTGTTCACAAAGACTACCAGACTGGTGGGTATTATCAGTATTGTTTTAGAAATAGATAATAACTTCTATTTTATTTATTTATTTATTTCTATAAGAAACAACTTTATTGATTGAATAAAATATCCCAAGATATCCGAAAATGGAAGGAAAAAAAAAGAAAGAAAAAGAGAAAAAAATATTAGAGGAACGAGAAAAAAGATTGGGAGGATGTCTTCGGAATGGCTTAAGTTTAATTTTTCTTCATGTTGCAAGCTTTTTTGTAATTATATTTCTTTTATTTTTTTTAGTTCTCATTGATGTTAAGTTTATGTGATATTTCATATGTTGTTTCTGCTGGGATATTAGCTACTGTAAATGTGAAACATGGAGTTGAATTGAGCACATTCCCATTTTTTTGCTTTTGGTAACTTTGGGAATTTGAAATTCCAGTTTCTTCCCTGGAATTTGTTTCCTTTTTCAAATTTTTAATCTATCAACAAAACGTTTCTTTCATTTAAAAGAAGAAAAAAACAGTCAAAATTATCTATAGCATTAGTTAGCTATACCAACACGGTGGATGGTTATGAACTATATGATGTTCATACCAGTGTTGGTGTCCTTATCTGTGTTTTTTAAGAAGGAAATGGTGCTGGCGTTTTATTAAAAAGTGTATTTACTGCTTCCCCTGACACGTCAGATTCAAGAATGATTCACATTAAAGGATCCATAGTTAAAAGAAAAATGGCTGGGCTTAGACAGGAGTTTGAAAATGAAGTACAACTACGGCTATCTGCTTTAGAAGCTGATCATATTTTCCATCAATTGGTCATATTTAAATATTGGTTCTTTTTGTTTCATATAAGTTTAAATAAAAAGTTGCGAACGCTTTTCACATTTGCTATTGGGAGATATTTTACCTCCTTCCCCGGTTAAGCAAAATATAGTTTGGAATTGAAGGAGGAAGTGGGAGATGCTAATGGCTTCACTAGGAAGTGCATTGCCTTTATATCATGCTGATTCATTGTTGATGACTTATTCCATGTTTCCATATTTGTTTTCTGAACAATCTTTTTCTTTCTTTTCAATAGGGACCTCCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCTCCTGATTATGAAACAGAAGAGTTTATTGAGACTCTTCAGCAATATGCTCAGTTAGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAGAGTGAAACATTTTTTGAATTTATTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAAATTTAAGGAGAAAACAGACCGTTTATTTTTAAGCAACCACGTCAGAATTGCTGAGAAGCAAGAAGAGCTCTGGAACAACGTGGAAAAAGGGTTCACTTTCCTGAGATCTATAAAAAGTGTTCACCATGCAAATGCCGCCACAGGAAAGCCTGGCGTGGTTCCTAAACTTGAAAAACAAGTCAGTTCTGACCAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAAATCATAAGGTTTGCAGGTAGGGGCTCATTTTTTTCATTCTTGTGTGGTTATTCTACGAGATGTTTTTCTTGGTTGGGAAGGAATGCTACTGTGTTGAATAGTATGGAGAGGAGCTTTGATGAGATTTAGGATGTCATTGCCATTTAACCTTAACCTCTTTTTGCCGTGGGAACGCACTTTTAAATAAATGATAGCCTTCTTTTAGATTTGGAAACAATTATATCTCTCTGTACATTTTTACATGCACCGTATTGGTCCTTTGGGCTGCTTTGTTGAGGGGTTTTTTTCTTCTTATTTTTTTCTTTTCTATTTTAAGTTTGTCTTCGTATTTTGTAATAGCCTTAGAGTTGATTTATCATAGGGCATGGAAGTAATCTATTCCTGGTGGTATCATGGAGAAGATGAATCTTCTATTAACAAGGCTGATGTGGTTGCCTTATTATTGTAGCTTTCAGTTGATATGTCAAGGTTTGCGTGACTTGGCTGTGTCCCAGTCTACTCTTCCGAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAAAATCATAAGCCAAGTCGCTACTGAGATTCATGGTCTCTATGTCTTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTGAGGTTGTTGACTTTTATTCATGTTTAAGTGTCTTTATGTGAAAATTGTTTGCATTATTTTTCCATGCTTGTATCAATGTTGAAAAATATTTGAAATTTCACTTGTGCCTGAGAATTTGGCGTCTTTGTTCTTTACCTTATGTGGCATGCTGCTCTATGCAGGAAAGTTGTCATTCAACTTTTACGTGGACGAGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCAAAGCATGAACTTGGTAGAGCTATCAATAGCAATGAATATAGCAAGGTTAGCCAATATTTTATTTGAGCTTACCCGCTTGAAAAAGGGAAATTTGTAATCGATTATTTTCCTTTGAAAAAGGAAAATTTTCAAGCAGGAAGGGATTGGGTTGTGCGATCAAATTACAAATTTCCGTAAATGTTATCAGCCTCCTTAACTGGTGTTACGATATCTGAGTGTTGTCTTGCCCTGTTGCATTCTCGCAGGTTATGAATGAAATTTGCATATCCCACGGTTCTTCTTGGACCTTGAAGAGTGGTGATGGAAATTCAAGATGATTAGGTTCTTGGAACATCATTCCGAGCACAATTAAAGAGGAGGTTCAAAGAAAAGCAAGCAACCAGATCTTCTCACTCTGTTGTACAACTTTCTACTCTTGAAAGTGTATCAAATTACACAAAGCATCTCTTCATCTTAAGAAGGGGTGAGAGAGAGAGGAAAAAAAAACCTTTTTTTTCTCATTTTAGCTCTGATTGATAAACAAAGCATTTTACAGATAAATGGAATGTGATTTCCAGTGGCCTCCCACAGCTAAATTTTGACTTCATGTATTACTCTACTGTCTTTTATCATCAGGTACCATATTCCAGCGCAGGGAAGCTTAGTGGAAAATGCTTTGGCAGACGCAACACTCTTTAATATCATTTTGCAAAATACAAATTTTGAAATGTACAGACAGGTAAATATTAGCCCTCTTATATTAGGCAATTTTATCCTTGCTATGTCAATAAGATGCAGCAAGAAACAGTGTAATGCTACAGTGCACAATTTTGGCAATGAACCAAGATCTTCGGACCCTTTTTAAAAAATTTCCTTCTTTTTTCTTTTTTGTTGGTGTCTTTTATGAACAAAATTGAGGATGCTCTTATTTCTTTTAGTGGACATCGTTTTTTAGTT

Coding sequence (CDS)

ATGGTGTCACAAACAGTTTCCCCTATGCAATTTTCAATGAGTCCGCACGACTATATGGACTCCTTGTGTCCTGGTACGAGTACAAGCGGCAACAAGCCCAAAGGTCCATCTAAAAAGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACCGAGGGACCTCCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCTCCTGATTATGAAACAGAAGAGTTTATTGAGACTCTTCAGCAATATGCTCAGTTAGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAGAGTGAAACATTTTTTGAATTTATTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAAATTTAAGGAGAAAACAGACCGTTTATTTTTAAGCAACCACGTCAGAATTGCTGAGAAGCAAGAAGAGCTCTGGAACAACGTGGAAAAAGGGTTCACTTTCCTGAGATCTATAAAAAGTGTTCACCATGCAAATGCCGCCACAGGAAAGCCTGGCGTGGTTCCTAAACTTGAAAAACAAGTCAGTTCTGACCAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAAATCATAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTGCGTGACTTGGCTGTGTCCCAGTCTACTCTTCCGAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAAAATCATAAGCCAAGTCGCTACTGAGATTCATGGTCTCTATGTCTTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTGAGGAAAGTTGTCATTCAACTTTTACGTGGACGAGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCAAAGCATGAACTTGGTAGAGCTATCAATAGCAATGAATATAGCAAGGTTATGAATGAAATTTGCATATCCCACGGTTCTTCTTGGACCTTGAAGAGTGGTGATGGAAATTCAAGATGA

Protein sequence

MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDGNSR

Homology

[Close]

BLAST of Cucsat.G11786.T9 vs. NCBI nr
Match: XP_004149158.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis sativus] >KGN53263.1 hypothetical protein Csa_015177 [Cucumis sativus])

HSP 1 Score: 783 bits (2023), Expect = 7.23e-281
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV
Sbjct: 310 MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 369

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK
Sbjct: 370 QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 429

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL
Sbjct: 430 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 489

Query: 181 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 240
           WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE
Sbjct: 490 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 549

Query: 241 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 300
           TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL
Sbjct: 550 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 609

Query: 301 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 360
           KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG
Sbjct: 610 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 669

Query: 361 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR
Sbjct: 670 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 702

[Close]

BLAST of Cucsat.G11786.T9 vs. NCBI nr
Match: TYK16700.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 727 bits (1877), Expect = 5.01e-259
Identity = 365/393 (92.88%), Postives = 373/393 (94.91%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MVSQTVSPMQFSMSPHDYMDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPV
Sbjct: 287 MVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 346

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYE EEF+E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK
Sbjct: 347 QRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 406

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE 
Sbjct: 407 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEG 466

Query: 181 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 240
           WN +EK   FLRS+KS  H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDE
Sbjct: 467 WNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDE 526

Query: 241 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 300
           TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+EL
Sbjct: 527 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEEL 586

Query: 301 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 360
           KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELG
Sbjct: 587 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELG 646

Query: 361 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           RAINSNEYSKVMNEIC+SHGSSWTLKSGDGNSR
Sbjct: 647 RAINSNEYSKVMNEICVSHGSSWTLKSGDGNSR 679

[Close]

BLAST of Cucsat.G11786.T9 vs. NCBI nr
Match: KAA0044763.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 727 bits (1877), Expect = 8.47e-259
Identity = 365/393 (92.88%), Postives = 373/393 (94.91%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MVSQTVSPMQFSMSPHDYMDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPV
Sbjct: 302 MVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 361

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYE EEF+E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK
Sbjct: 362 QRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 421

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE 
Sbjct: 422 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEG 481

Query: 181 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 240
           WN +EK   FLRS+KS  H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDE
Sbjct: 482 WNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDE 541

Query: 241 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 300
           TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+EL
Sbjct: 542 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEEL 601

Query: 301 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 360
           KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELG
Sbjct: 602 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELG 661

Query: 361 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           RAINSNEYSKVMNEIC+SHGSSWTLKSGDGNSR
Sbjct: 662 RAINSNEYSKVMNEICVSHGSSWTLKSGDGNSR 694

[Close]

BLAST of Cucsat.G11786.T9 vs. NCBI nr
Match: XP_008453719.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo])

HSP 1 Score: 727 bits (1877), Expect = 1.12e-258
Identity = 365/393 (92.88%), Postives = 373/393 (94.91%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MVSQTVSPMQFSMSPHDYMDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPV
Sbjct: 310 MVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 369

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYE EEF+E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK
Sbjct: 370 QRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 429

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE 
Sbjct: 430 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEG 489

Query: 181 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 240
           WN +EK   FLRS+KS  H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDE
Sbjct: 490 WNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDE 549

Query: 241 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 300
           TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+EL
Sbjct: 550 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEEL 609

Query: 301 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 360
           KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELG
Sbjct: 610 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELG 669

Query: 361 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           RAINSNEYSKVMNEIC+SHGSSWTLKSGDGNSR
Sbjct: 670 RAINSNEYSKVMNEICVSHGSSWTLKSGDGNSR 702

[Close]

BLAST of Cucsat.G11786.T9 vs. NCBI nr
Match: XP_038876785.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida])

HSP 1 Score: 677 bits (1748), Expect = 4.67e-239
Identity = 343/395 (86.84%), Postives = 361/395 (91.39%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MV+QT +PMQFSMSP DYMDSLCPGTSTS NKPKGPSK+YLLSLSLEERIKKLLTEGPPV
Sbjct: 310 MVAQTAAPMQFSMSPLDYMDSLCPGTSTSSNKPKGPSKRYLLSLSLEERIKKLLTEGPPV 369

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYE EEFIE LQQYAQ VQGLWVPKS  L+PQD SGRCARDFVL LFSK
Sbjct: 370 QRFSALKHYAPDYEAEEFIEALQQYAQSVQGLWVPKSSVLLPQDASGRCARDFVLNLFSK 429

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLR++VKHFLNLFGVERPAFKDWKFKEKTD LFLSN+V + +KQE++
Sbjct: 430 NPVVSSSQINVPKSLREKVKHFLNLFGVERPAFKDWKFKEKTDHLFLSNYVDLVQKQEKI 489

Query: 181 WNNVEKGFT--FLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMS 240
           W +VE+G +  F  S KSV HANAATGKP +V K EKQVS+D+ T KSSNA LNRK  MS
Sbjct: 490 WRSVEEGISKIFHGSGKSVSHANAATGKPDMVSKPEKQVSNDKATIKSSNAALNRKSTMS 549

Query: 241 DETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPD 300
           DETREALPKALQKLF NHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPD
Sbjct: 550 DETREALPKALQKLFHNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPD 609

Query: 301 ELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHE 360
           ELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK E
Sbjct: 610 ELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRE 669

Query: 361 LGRAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           LGR I SNEYSKVMNEIC+SHGSSW LKSGDGNSR
Sbjct: 670 LGRGITSNEYSKVMNEICVSHGSSWALKSGDGNSR 704

[Close]

BLAST of Cucsat.G11786.T9 vs. ExPASy TrEMBL
Match: A0A0A0KUN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1)

HSP 1 Score: 783 bits (2023), Expect = 3.50e-281
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV
Sbjct: 310 MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 369

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK
Sbjct: 370 QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 429

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL
Sbjct: 430 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 489

Query: 181 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 240
           WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE
Sbjct: 490 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 549

Query: 241 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 300
           TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL
Sbjct: 550 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 609

Query: 301 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 360
           KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG
Sbjct: 610 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 669

Query: 361 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR
Sbjct: 670 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 702

[Close]

BLAST of Cucsat.G11786.T9 vs. ExPASy TrEMBL
Match: A0A5D3CZA9 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005330 PE=4 SV=1)

HSP 1 Score: 727 bits (1877), Expect = 2.43e-259
Identity = 365/393 (92.88%), Postives = 373/393 (94.91%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MVSQTVSPMQFSMSPHDYMDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPV
Sbjct: 287 MVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 346

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYE EEF+E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK
Sbjct: 347 QRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 406

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE 
Sbjct: 407 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEG 466

Query: 181 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 240
           WN +EK   FLRS+KS  H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDE
Sbjct: 467 WNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDE 526

Query: 241 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 300
           TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+EL
Sbjct: 527 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEEL 586

Query: 301 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 360
           KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELG
Sbjct: 587 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELG 646

Query: 361 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           RAINSNEYSKVMNEIC+SHGSSWTLKSGDGNSR
Sbjct: 647 RAINSNEYSKVMNEICVSHGSSWTLKSGDGNSR 679

[Close]

BLAST of Cucsat.G11786.T9 vs. ExPASy TrEMBL
Match: A0A5A7TMP0 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00520 PE=4 SV=1)

HSP 1 Score: 727 bits (1877), Expect = 4.10e-259
Identity = 365/393 (92.88%), Postives = 373/393 (94.91%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MVSQTVSPMQFSMSPHDYMDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPV
Sbjct: 302 MVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 361

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYE EEF+E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK
Sbjct: 362 QRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 421

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE 
Sbjct: 422 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEG 481

Query: 181 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 240
           WN +EK   FLRS+KS  H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDE
Sbjct: 482 WNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDE 541

Query: 241 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 300
           TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+EL
Sbjct: 542 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEEL 601

Query: 301 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 360
           KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELG
Sbjct: 602 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELG 661

Query: 361 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           RAINSNEYSKVMNEIC+SHGSSWTLKSGDGNSR
Sbjct: 662 RAINSNEYSKVMNEICVSHGSSWTLKSGDGNSR 694

[Close]

BLAST of Cucsat.G11786.T9 vs. ExPASy TrEMBL
Match: A0A1S3BX09 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494365 PE=4 SV=1)

HSP 1 Score: 727 bits (1877), Expect = 5.42e-259
Identity = 365/393 (92.88%), Postives = 373/393 (94.91%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MVSQTVSPMQFSMSPHDYMDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPV
Sbjct: 310 MVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 369

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYE EEF+E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK
Sbjct: 370 QRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 429

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE 
Sbjct: 430 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEG 489

Query: 181 WNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDE 240
           WN +EK   FLRS+KS  H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDE
Sbjct: 490 WNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDE 549

Query: 241 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDEL 300
           TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+EL
Sbjct: 550 TREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEEL 609

Query: 301 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELG 360
           KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELG
Sbjct: 610 KKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELG 669

Query: 361 RAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           RAINSNEYSKVMNEIC+SHGSSWTLKSGDGNSR
Sbjct: 670 RAINSNEYSKVMNEICVSHGSSWTLKSGDGNSR 702

[Close]

BLAST of Cucsat.G11786.T9 vs. ExPASy TrEMBL
Match: A0A6J1JCH8 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483153 PE=4 SV=1)

HSP 1 Score: 669 bits (1726), Expect = 5.28e-236
Identity = 336/395 (85.06%), Postives = 361/395 (91.39%), Query Frame = 0


Query: 1   MVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPV 60
           MV+Q  SPMQFSMSPHDY+DSLCPG S+S NKPKGPSK++LLSLSLEERIKKLLTEGPP+
Sbjct: 312 MVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERIKKLLTEGPPI 371

Query: 61  QRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSK 120
           QRFSALKHYAPDYE +EFIE LQQYAQ VQGLWV KS FL+PQDGSGRCARDFVL LFSK
Sbjct: 372 QRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCARDFVLSLFSK 431

Query: 121 NPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEEL 180
           NPVVSSSQINVPKSLRD+VKHFLN FGVERPAFKDW+FKEKTDRLFL+N+V I +KQE++
Sbjct: 432 NPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNYVDIVQKQEKV 491

Query: 181 WNNVEKGFT--FLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMS 240
           W +VE+G T  F  S+K++ HANAA  KP +VPK EKQV  D+ +TKSSNA LNRK  MS
Sbjct: 492 WRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSNAALNRKSTMS 551

Query: 241 DETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPD 300
           DETREALPKALQKLFQ HKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPD
Sbjct: 552 DETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPD 611

Query: 301 ELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHE 360
           ELK+II QVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK E
Sbjct: 612 ELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRE 671

Query: 361 LGRAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 393
           LGRAINSNEYSKVMNEIC+SHGSSW LKSGDGNSR
Sbjct: 672 LGRAINSNEYSKVMNEICVSHGSSWALKSGDGNSR 706

The following BLAST results are available for this feature:

BLAST of Cucsat.G11786.T9 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G11786.T9 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149158.1	7.23e-281	100.00	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis sativus] >KGN53...	[more]
TYK16700.1	5.01e-259	92.88	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw...	[more]
KAA0044763.1	8.47e-259	92.88	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw...	[more]
XP_008453719.1	1.12e-258	92.88	PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo...	[more]
XP_038876785.1	4.67e-239	86.84	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida]	[more]

BLAST of Cucsat.G11786.T9 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUN5	3.50e-281	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1	[more]
A0A5D3CZA9	2.43e-259	92.88	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A5A7TMP0	4.10e-259	92.88	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak...	[more]
A0A1S3BX09	5.42e-259	92.88	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A6J1JCH8	5.28e-236	85.06	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PFAM	PF04801	Sin_N	coord: 2..187 e-value: 1.9E-36 score: 126.2
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PANTHER	PTHR12069	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	coord: 1..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..234

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G11786	Cucsat.G11786	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G11786.T9.E1	Cucsat.G11786.T9.E1	exon
Cucsat.G11786.T9.E2	Cucsat.G11786.T9.E2	exon
Cucsat.G11786.T9.E3	Cucsat.G11786.T9.E3	exon
Cucsat.G11786.T9.E4	Cucsat.G11786.T9.E4	exon
Cucsat.G11786.T9.E5	Cucsat.G11786.T9.E5	exon
Cucsat.G11786.T9.E6	Cucsat.G11786.T9.E6	exon
Cucsat.G11786.T9.E7	Cucsat.G11786.T9.E7	exon
Cucsat.G11786.T9.E8	Cucsat.G11786.T9.E8	exon
Cucsat.G11786.T9.E9	Cucsat.G11786.T9.E9	exon
Cucsat.G11786.T9.E10	Cucsat.G11786.T9.E10	exon
Cucsat.G11786.T9.E11	Cucsat.G11786.T9.E11	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G11786.T9.C1	Cucsat.G11786.T9.C1	CDS
Cucsat.G11786.T9.C2	Cucsat.G11786.T9.C2	CDS
Cucsat.G11786.T9.C3	Cucsat.G11786.T9.C3	CDS
Cucsat.G11786.T9.C4	Cucsat.G11786.T9.C4	CDS
Cucsat.G11786.T9.C5	Cucsat.G11786.T9.C5	CDS
Cucsat.G11786.T9.C6	Cucsat.G11786.T9.C6	CDS
Cucsat.G11786.T9.C7	Cucsat.G11786.T9.C7	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G11786.T9	Cucsat.G11786.T9-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity