Cucsat.G11786.T14 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G11786.T14
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionDNA-directed RNA polymerase III subunit RPC5 isoform X1
Locationctg1820: 5169293 .. 5177737 (+)
RNA-Seq ExpressionCucsat.G11786.T14
SyntenyCucsat.G11786.T14
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCTGAAATTATTTTTGAAAGAAAAAGAGAAAGTAAAGGGAAAATTACTTAGAAAAATAACGAAAATAAACCTAAAAAAAGAGCATACAGAAAATTTATGGGTGCGGCGGTCTAAGTTATCTCTCCGCCGGAGCAGTTGGTGGTTGCGGAAAGAAAAAACTTCGATTGCATATTCTCTAGTGTCCGATAAGCTTTTCGCTGCTGATTCACCAAGAGGAAGGAGCACGTCAAAAACCTTTCAGGATGGACCTGGACGGCCTAGACGAAGGGAGCCAGGTACCATCACGGACCTCCAGATTCGCACCCAAGTCCTCTAAATTCAAGCCGAAACCAAAATCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCTAACGAAGTTGGAACCTCAACCTCCCATTTCTAAGCCGGAAGTTGTAGAGCCTGATGCTCGAGTTGAGGAGAAGAAGGAAGACGGTGAAGAAGTAGAAGTAAAACCTAAAGTTGAATCCTCACTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGTCGGAAGTTGAAGAGGATGCAATGGTGGATGATGATCCAATTGAAGAGGATGCTTCTGAAGATATGGTTGTTCGTGAAATCGACGTTCTATTTACTCCTTCAGTTGATAGCAATTCGAAAGTTAGTCTTCTTTGCCTTTGTCTTTCATACCTTGTACCATTATTTAGTTCTTTTTGAAATTTTAACTTGACTGTCATCTATTTCCAGTTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTCGAGGGGCGATGTGACGAGGTGAGCATTTTCTTTAATTCCTTATTATTCTGGAAGAATTTGAACTGTACTCTTTTAGTTTCAACAGGTAAGAGTTAAACCTAGCACTGGAGAAGTGGAAGTCGACCTGAATGTTGATATTGAATCCAATAACTATGACAACAAAGCTGATGGCACATTCCAAATGAAGAAGCAGGTATCTTCTCTTACTGTTCTGTTGATTTAAATTGCTGCGAATTCATGCATATTTGGCTATTTATTAGGATTACTAGTCTGGTTCATCTGTGTGATTGAACTTGCAGATCATGTCAGGTTTAACTTGAAAAAACATGCTACATTCGTTAGGATTTTCCCAAAAGATAAAACAGTGATAGTTCATTGAAACCGAATTCAGCAACAGTTTCTAGTTGAATCTTCTTTCTTTTCTTTCTTTTTTTCCCGTCGTATTATCCTTGAGTTTCTTTTCACTTTATCAACTTAACTATGTTTCACCTATTAATTAGTCATGGGCTATTTCTTTCATGTACTATATTCAACAGAGGATTGATTTATTGGCAGTGTATTTTTGTGGATACCAATAAAATTTTGTTTTTGGTTCAGACTTTGACATCTTCATGGCAACCGCCTCTAGCTACGTCCTATGCTGTTGGTCTGCTTATGGGCAATAAGGTTGCTTCTCTCTATCTCATATCTTTTGAACTGCACACCTTTTCTTTTCTTCTTCTTCTTTTTATGATTGACATTGAATCAACCGTAGTTAATGGACCCTTAGTTTCTTCATTGTTCTAGCACTCAGTCATTTTTAATTTTGAATCAGAAAACATAAGCGTAGTGGTAAGCAAGAATAATAAAGTTCTTGGAGGAAATAGGTTCAAGCCACGGTGGCCTTACCTTAGATTTAATATACTACGAGCTTTATTAACAATGAAATGTAGTAGGGTTAGACAGGGTCCTATGAGAATAGACAAGGTACACAAATGACACGGACTCTCACATAAATAGAAAAGAATAATATTGAAATATTAAGTAACCATGAATAAAAGGTTTCCATAAAAGTTTTGATTATTGGAAGAATAGTTACAAACACTTCTTACGTATTACAATATGAGCTCACATTTCGCTTAACAATATCATATTTATCTACCAAAGAAGGTTGTTTGCCTTAAAATAAATGTTGATTATTATTCAACTTATTGCCTCCTCAAAATTGACTTGACCGTCTATATTCTTAAATTTTGTCTTCTTAAAACTTTGATGGTGAAGGAAATGGAAAATATGTAAAATCTTGGCATATGTTGCCTTTTTCTCAAAAGGAAACAACAGATATTTTGGTCTTTTGTTGTCATTGTTTGGATATTTTTCTTTTGTTTTACTAAGGAGAAGGGATTCTTGTTCATGAGGCCTTGATCCTGTGGTGGGGTTTTCTTGCAAATACTTTTTTTGTTGTTTAGTGGAACACTTTTTTGTTGCTATGAAAGATTAAAATTTCTTGAAGGTTATATTTTTATTCCAGAAGTTCTTCACAGTAGAGTTTATACTTTAGATCACATTATGAGGATCTTATACTGTTGTATCTGTAATTGTTTGAATGGAAAACCTAGATTTTGTACTTGGTCAAATTGGTCCTTTTCTTCTAACTAATTAGCATGAACGCAAGAGGATCATAGGTTTCTGCTTATTCCCCTAATCTTATGATGGTCATCAAATCATTTGTCAAATTTTAGAACAAGGACCTGTTTGTTTAGTTTTCCTTTAAAAGTAAATAACTATTGCTAATGTATCTATGTGTTATATTGCAGCTACACCTGAATCCCGTACATGCAGTTGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCGAAAAGGAAAAATAATGTTAGAGCTGATTCAGATGTTAAGTCAGAAGAGCATGTGGATGTTAATTCTGCAGGTGCATCAAGGAAGCAGGTTATTTTCTATTTTTTCTATTCCATTCTAAAGTACTGCTGAAATATAGTGAATTTTATCTTGGGAAATCTGCCAAGTCGCTGATCGTGTTTATTTGGTAACTGTAAAGTATAATCATAATAACAATTATTGTTATTATTTTATAGGGAACACAATCATTTAATAGCTAGAAACCTCTGGGGCTATGCTGGTAGAGCTTTCCTTGGCTTTGTTGGATGGAAAGGAACAAAAGTTTTATTTGAAGAGAAGTTACTGATTTTATTTCTTTTTGTGGCAACTTTCAGCTATTAGCCTCTTGGTTGTGTCACACTTACAATCAATCCTTTTTAATTACTTTTGTTTAGGCTTTGTTTGATAACAATTTTATTTTCAGTTTTTGGAAACTAAGTATATTTCTAACACGACTTTCATCTTTCTGGACTAAAAGAGTTGAATTCTTAGCCAAATTTCGAAAATTATAACAATTTTTTAGAAACTATTGTTGGCTGTCAGAAGGGTATTTACCTTTACCCGGAAGACTTTTTTTTTCTTTTTTTGCAACTTACCTTATTCCTTTGAATGGTCTATTCTTAGTTTATTTATTTATTTATTTTATCATTAACTTACTGTCTACTGACCTTATCATTGTATTGCATTGGTTCACATCTGGGATTACATATTTTGTTCTGGTATTTATGGATTTTTGTATTGTTTCTATGGAACAGAAGAAGCAAACAGGACCTTCAACGGAAGTTAAAACTAGAGATGAGGAGGTAACACCATTGAAAATGAGTGCTCAATAGTGTAGGTTTAAGATTGTTTCTGAGAAAGTATTTTTTAGTGGGAGTTTCTTCCCCTGCACTTGTAGAAGAATTACTTATTAAGTGATGCTTCTAAAAGCAGCTTTAGTGCTTTCTAAGTGTTAGGTTTTTCAACATTTTTTTAAACTATGGAATGACATACCTTGAAAATTTTGAAATATGTTTTCAATGAACAAAAAAATGAGACATGATCCTACTAACTAATTAAGAGATCATGGGTTCATTCCATGGTGGCCACCTACCTCGAAATTAATTTCCTAGACACTCAAAGGTTGTAAGGTTAGGTGGGTTGTTCCGTATGATTAGTGAGATGCGTGTAAGCTGGTCCAAACACTTACGAATATTAAAAGAAAATTGACAAATGAAAACTATTACTCAAAGTACAAGGAAACATAACTCAAAGTACTTATCCTTGAGATAATGAAAAGAGACTATTTCTCAAAGTACAAGGGAACAAATGAAAACGTGTAGATTTAAACAATCAAAGACACGACTATCAACCTTAGGTATGATTGCCTTACTGTTAAATCCATCATTTTATAGTCGTCTAAAATTGTTTTGTTCACTTTTTCTCTCTAGTGCTGGATTCCACTCAAGTACTATGGCTTAGAGAGTGATCTATCAACCAGACATCTGCAAAGCATGGTGTCACAAACAGTTTCCCCTATGCAATTTTCAATGAGTCCGTATGTGTTTTTTGCTTGTTTATGTATTAAATCTTTAATACAGTAAATTTCATCTATCTGATAATTTTTCTTTTGAGTATTTGATTTGGTTCCTACTTATTTAAGGCACGACTATATGGACTCCTTGTGTCCTGGTACGAGTACAAGCGGCAACAAGCCCAAAGGTCCATCTAAAAAGTAAATACAATTACATATTCAGCTGTTTAATTTATGTTACCGAACATTTAAGTTGTCAGGCAACTGGTTGCAAGAAGTTGTCGGGGAGACTTCTAGTATTGATTAATGTTTTAATCCTACTTATGGGCATTTCAGGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACCGAGGTTTGTTTTAAATGAATACTTGTAAAAAAATTATTTCTGATGCATTTGCACATCTACTATAGCATCTAACTTCTATGCATTATTTGTTGGACGTATATTCCATCTTTTATGGTTTCATATTCATCAAACATTTTTTATTATCATTTAACTTACTGTCAAATTTAAGTTATTAGTATCTCTTTTTTAGTATTCGGGTCTTGAGAAAACTGTGACCTTATTACAAGAAAACTTTTAGTATATTGTGTGATCCTACTACATTTAGTTGTCAAGAAAACTTGTAGGATATTAAATCCTAGGTTGACTATAATTTGAACTTATTTTTTCTATGTTCTACTGTTTTCATTGTTCACAAAGACTACCAGACTGGTGGGTATTATCAGTATTGTTTTAGAAATAGATAATAACTTCTATTTTATTTATTTATTTATTTCTATAAGAAACAACTTTATTGATTGAATAAAATATCCCAAGATATCCGAAAATGGAAGGAAAAAAAAAGAAAGAAAAAGAGAAAAAAATATTAGAGGAACGAGAAAAAAGATTGGGAGGATGTCTTCGGAATGGCTTAAGTTTAATTTTTCTTCATGTTGCAAGCTTTTTTGTAATTATATTTCTTTTATTTTTTTTAGTTCTCATTGATGTTAAGTTTATGTGATATTTCATATGTTGTTTCTGCTGGGATATTAGCTACTGTAAATGTGAAACATGGAGTTGAATTGAGCACATTCCCATTTTTTTGCTTTTGGTAACTTTGGGAATTTGAAATTCCAGTTTCTTCCCTGGAATTTGTTTCCTTTTTCAAATTTTTAATCTATCAACAAAACGTTTCTTTCATTTAAAAGAAGAAAAAAACAGTCAAAATTATCTATAGCATTAGTTAGCTATACCAACACGGTGGATGGTTATGAACTATATGATGTTCATACCAGTGTTGGTGTCCTTATCTGTGTTTTTTAAGAAGGAAATGGTGCTGGCGTTTTATTAAAAAGTGTATTTACTGCTTCCCCTGACACGTCAGATTCAAGAATGATTCACATTAAAGGATCCATAGTTAAAAGAAAAATGGCTGGGCTTAGACAGGAGTTTGAAAATGAAGTACAACTACGGCTATCTGCTTTAGAAGCTGATCATATTTTCCATCAATTGGTCATATTTAAATATTGGTTCTTTTTGTTTCATATAAGTTTAAATAAAAAGTTGCGAACGCTTTTCACATTTGCTATTGGGAGATATTTTACCTCCTTCCCCGGTTAAGCAAAATATAGTTTGGAATTGAAGGAGGAAGTGGGAGATGCTAATGGCTTCACTAGGAAGTGCATTGCCTTTATATCATGCTGATTCATTGTTGATGACTTATTCCATGTTTCCATATTTGTTTTCTGAACAATCTTTTTCTTTCTTTTCAATAGGGACCTCCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCTCCTGATTATGAAACAGAAGAGTTTATTGAGACTCTTCAGCAATATGCTCAGTTAGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAGAGTGAAACATTTTTTGAATTTATTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAAATTTAAGGAGAAAACAGACCGTTTATTTTTAAGCAACCACGTCAGAATTGCTGAGAAGCAAGAAGAGCTCTGGAACAACGTGGAAAAAGGGTTCACTTTCCTGAGATCTATAAAAAGTGTTCACCATGCAAATGCCGCCACAGGAAAGCCTGGCGTGGTTCCTAAACTTGAAAAACAAGTCAGTTCTGACCAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAAATCATAAGGTTTGCAGGTAGGGGCTCATTTTTTTCATTCTTGTGTGGTTATTCTACGAGATGTTTTTCTTGGTTGGGAAGGAATGCTACTGTGTTGAATAGTATGGAGAGGAGCTTTGATGAGATTTAGGATGTCATTGCCATTTAACCTTAACCTCTTTTTGCCGTGGGAACGCACTTTTAAATAAATGATAGCCTTCTTTTAGATTTGGAAACAATTATATCTCTCTGTACATTTTTACATGCACCGTATTGGTCCTTTGGGCTGCTTTGTTGAGGGGTTTTTTTCTTCTTATTTTTTTCTTTTCTATTTTAAGTTTGTCTTCGTATTTTGTAATAGCCTTAGAGTTGATTTATCATAGGGCATGGAAGTAATCTATTCCTGGTGGTATCATGGAGAAGATGAATCTTCTATTAACAAGGCTGATGTGGTTGCCTTATTATTGTAGCTTTCAGTTGATATGTCAAGGTTTGCGTGACTTGGCTGTGTCCCAGTCTACTCTTCCGAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAAAATCATAAGCCAAGTCGCTACTGAGATTCATGGTCTCTATGTCTTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTGAGGTTGTTGACTTTTATTCATGTTTAAGTGTCTTTATGTGAAAATTGTTTGCATTATTTTTCCATGCTTGTATCAATGTTGAAAAATATTTGAAATTTCACTTGTGCCTGAGAATTTGGCGTCTTTGTTCTTTACCTTATGTGGCATGCTGCTCTATGCAGGAAAGTTGTCATTCAACTTTTACGTGGACGAGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCAAAGCATGAACTTGGTAGAGCTATCAATAGCAATGAATATAGCAAGGTTAGCCAATATTTTATTTGAGCTTACCCGCTTGAAAAAGGGAAATTTGTAATCGATTATTTTCCTTTGAAAAAGGAAAATTTTCAAGCAGGAAGGGATTGGGTTGTGCGATCAAATTACAAATTTCCGTAAATGTTATCAGCCTCCTTAACTGGTGTTACGATATCTGAGTGTTGTCTTGCCCTGTTGCATTCTCGCAGGTTATGAATGAAATTTGCATATCCCACGGTTCTTCTTGGACCTTGAAGAGTGGTGATGGAAATTCAAGATGATTAGGTTCTTGGAACATCATTCCGAGCACAATTAAAGAGGAGGTTCAAAGAAAAGCAAGCAACCAGATCTTCTCACTCTGTTGTACAACTTTCTACTCTTGAAAGTGTATCAAATTACACAAAGCATCTCTTCATCTTAAGAAGGGGTGAGAGAGAGAGGAAAAAAAAACCTTTTTTTTCTCATTTTAGCTCTGATTGATAAACAAAGCATTTTACAGATAAATGGAATGTGATTTCCAGTGGCCTCCCACAGCTAAATTTTGACTTCATGTATTACTCTACTGTCTTTTATCATCAGGTACCATATTCCAGCGCAGGGAAGCTTAGTGGAAAATGCTTTGGCAGACGCAACACTCTTTAATATCATTTTGCAAAATACAAATTTTGAAATGTACAGACAGGTAAATATTAGCCCTCTTATATTAGGCAATTTTATCCTTGCTATGTCAATAAGATGCAGCAAGAAACAGTGTAATGCTACAGTGCACAATTTTGGCAATGAACCAAGATCTTCGGACCCTTTTTAAAAAATTTCCTTCTTTTTTCTTTTTTGTTGGTGTCTTTTATGAACAAAATTGAGGATGCTCTTATTTCTTTTAGTGGACATCGTTTTTTAGTTATTAAATTTCAGT

Coding sequence (CDS)

ATGGACTCCTTGTGTCCTGGTACGAGTACAAGCGGCAACAAGCCCAAAGGTCCATCTAAAAAGTATTTGCTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACCGAGGGACCTCCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCTCCTGATTATGAAACAGAAGAGTTTATTGAGACTCTTCAGCAATATGCTCAGTTAGTGCAGGGTCTCTGGGTTCCAAAAAGTTTATTTCTAATTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTTTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAGAGTGAAACATTTTTTGAATTTATTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAAATTTAAGGAGAAAACAGACCGTTTATTTTTAAGCAACCACGTCAGAATTGCTGAGAAGCAAGAAGAGCTCTGGAACAACGTGGAAAAAGGGTTCACTTTCCTGAGATCTATAAAAAGTGTTCACCATGCAAATGCCGCCACAGGAAAGCCTGGCGTGGTTCCTAAACTTGAAAAACAAGTCAGTTCTGACCAGACTACAACTAAAAGCAGTAATGCACCTCTTAACCGCAAAGGTGCAATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAAATCATAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTGCGTGACTTGGCTGTGTCCCAGTCTACTCTTCCGAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAAAATCATAAGCCAAGTCGCTACTGAGATTCATGGTCTCTATGTCTTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTGAGGAAAGTTGTCATTCAACTTTTACGTGGACGAGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCAAAGCATGAACTTGGTAGAGCTATCAATAGCAATGAATATAGCAAGGTTATGAATGAAATTTGCATATCCCACGGTTCTTCTTGGACCTTGAAGAGTGGTGATGGAAATTCAAGATGA

Protein sequence

MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDGNSR
Homology
[Close]
BLAST of Cucsat.G11786.T14 vs. NCBI nr
Match: XP_004149158.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis sativus] >KGN53263.1 hypothetical protein Csa_015177 [Cucumis sativus])

HSP 1 Score: 749 bits (1934), Expect = 1.18e-267
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF
Sbjct: 328 MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 387

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR
Sbjct: 388 IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 447

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 180
           VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH
Sbjct: 448 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 507

Query: 181 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 240
           HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV
Sbjct: 508 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 567

Query: 241 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 300
           CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT
Sbjct: 568 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 627

Query: 301 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 360
           SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS
Sbjct: 628 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 687

Query: 361 HGSSWTLKSGDGNSR 375
           HGSSWTLKSGDGNSR
Sbjct: 688 HGSSWTLKSGDGNSR 702

[Close]
BLAST of Cucsat.G11786.T14 vs. NCBI nr
Match: TYK16700.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 693 bits (1788), Expect = 8.11e-246
Identity = 347/375 (92.53%), Postives = 355/375 (94.67%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           MDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF
Sbjct: 305 MDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEF 364

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           +E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR
Sbjct: 365 LEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 424

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 180
           VKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  
Sbjct: 425 VKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGP 484

Query: 181 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 240
           H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV
Sbjct: 485 HTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 544

Query: 241 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 300
           CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLT
Sbjct: 545 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLT 604

Query: 301 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 360
           SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+S
Sbjct: 605 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVS 664

Query: 361 HGSSWTLKSGDGNSR 375
           HGSSWTLKSGDGNSR
Sbjct: 665 HGSSWTLKSGDGNSR 679

[Close]
BLAST of Cucsat.G11786.T14 vs. NCBI nr
Match: KAA0044763.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 693 bits (1788), Expect = 1.36e-245
Identity = 347/375 (92.53%), Postives = 355/375 (94.67%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           MDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF
Sbjct: 320 MDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEF 379

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           +E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR
Sbjct: 380 LEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 439

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 180
           VKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  
Sbjct: 440 VKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGP 499

Query: 181 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 240
           H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV
Sbjct: 500 HTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 559

Query: 241 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 300
           CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLT
Sbjct: 560 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLT 619

Query: 301 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 360
           SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+S
Sbjct: 620 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVS 679

Query: 361 HGSSWTLKSGDGNSR 375
           HGSSWTLKSGDGNSR
Sbjct: 680 HGSSWTLKSGDGNSR 694

[Close]
BLAST of Cucsat.G11786.T14 vs. NCBI nr
Match: XP_008453719.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo])

HSP 1 Score: 693 bits (1788), Expect = 1.79e-245
Identity = 347/375 (92.53%), Postives = 355/375 (94.67%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           MDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF
Sbjct: 328 MDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEF 387

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           +E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR
Sbjct: 388 LEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 447

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 180
           VKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  
Sbjct: 448 VKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGP 507

Query: 181 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 240
           H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV
Sbjct: 508 HTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 567

Query: 241 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 300
           CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLT
Sbjct: 568 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLT 627

Query: 301 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 360
           SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+S
Sbjct: 628 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVS 687

Query: 361 HGSSWTLKSGDGNSR 375
           HGSSWTLKSGDGNSR
Sbjct: 688 HGSSWTLKSGDGNSR 702

[Close]
BLAST of Cucsat.G11786.T14 vs. NCBI nr
Match: XP_038876785.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida])

HSP 1 Score: 651 bits (1680), Expect = 4.76e-229
Identity = 329/377 (87.27%), Postives = 345/377 (91.51%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           MDSLCPGTSTS NKPKGPSK+YLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF
Sbjct: 328 MDSLCPGTSTSSNKPKGPSKRYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEF 387

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           IE LQQYAQ VQGLWVPKS  L+PQD SGRCARDFVL LFSKNPVVSSSQINVPKSLR++
Sbjct: 388 IEALQQYAQSVQGLWVPKSSVLLPQDASGRCARDFVLNLFSKNPVVSSSQINVPKSLREK 447

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFT--FLRSIKS 180
           VKHFLNLFGVERPAFKDWKFKEKTD LFLSN+V + +KQE++W +VE+G +  F  S KS
Sbjct: 448 VKHFLNLFGVERPAFKDWKFKEKTDHLFLSNYVDLVQKQEKIWRSVEEGISKIFHGSGKS 507

Query: 181 VHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNH 240
           V HANAATGKP +V K EKQVS+D+ T KSSNA LNRK  MSDETREALPKALQKLF NH
Sbjct: 508 VSHANAATGKPDMVSKPEKQVSNDKATIKSSNAALNRKSTMSDETREALPKALQKLFHNH 567

Query: 241 KVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYV 300
           KVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYV
Sbjct: 568 KVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYV 627

Query: 301 LTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEIC 360
           LTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGR I SNEYSKVMNEIC
Sbjct: 628 LTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRGITSNEYSKVMNEIC 687

Query: 361 ISHGSSWTLKSGDGNSR 375
           +SHGSSW LKSGDGNSR
Sbjct: 688 VSHGSSWALKSGDGNSR 704

[Close]
BLAST of Cucsat.G11786.T14 vs. ExPASy TrEMBL
Match: A0A0A0KUN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1)

HSP 1 Score: 749 bits (1934), Expect = 5.72e-268
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF
Sbjct: 328 MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 387

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR
Sbjct: 388 IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 447

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 180
           VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH
Sbjct: 448 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 507

Query: 181 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 240
           HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV
Sbjct: 508 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 567

Query: 241 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 300
           CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT
Sbjct: 568 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 627

Query: 301 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 360
           SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS
Sbjct: 628 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 687

Query: 361 HGSSWTLKSGDGNSR 375
           HGSSWTLKSGDGNSR
Sbjct: 688 HGSSWTLKSGDGNSR 702

[Close]
BLAST of Cucsat.G11786.T14 vs. ExPASy TrEMBL
Match: A0A5D3CZA9 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005330 PE=4 SV=1)

HSP 1 Score: 693 bits (1788), Expect = 3.92e-246
Identity = 347/375 (92.53%), Postives = 355/375 (94.67%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           MDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF
Sbjct: 305 MDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEF 364

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           +E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR
Sbjct: 365 LEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 424

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 180
           VKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  
Sbjct: 425 VKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGP 484

Query: 181 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 240
           H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV
Sbjct: 485 HTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 544

Query: 241 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 300
           CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLT
Sbjct: 545 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLT 604

Query: 301 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 360
           SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+S
Sbjct: 605 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVS 664

Query: 361 HGSSWTLKSGDGNSR 375
           HGSSWTLKSGDGNSR
Sbjct: 665 HGSSWTLKSGDGNSR 679

[Close]
BLAST of Cucsat.G11786.T14 vs. ExPASy TrEMBL
Match: A0A5A7TMP0 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00520 PE=4 SV=1)

HSP 1 Score: 693 bits (1788), Expect = 6.59e-246
Identity = 347/375 (92.53%), Postives = 355/375 (94.67%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           MDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF
Sbjct: 320 MDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEF 379

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           +E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR
Sbjct: 380 LEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 439

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 180
           VKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  
Sbjct: 440 VKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGP 499

Query: 181 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 240
           H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV
Sbjct: 500 HTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 559

Query: 241 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 300
           CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLT
Sbjct: 560 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLT 619

Query: 301 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 360
           SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+S
Sbjct: 620 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVS 679

Query: 361 HGSSWTLKSGDGNSR 375
           HGSSWTLKSGDGNSR
Sbjct: 680 HGSSWTLKSGDGNSR 694

[Close]
BLAST of Cucsat.G11786.T14 vs. ExPASy TrEMBL
Match: A0A1S3BX09 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494365 PE=4 SV=1)

HSP 1 Score: 693 bits (1788), Expect = 8.68e-246
Identity = 347/375 (92.53%), Postives = 355/375 (94.67%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           MDSLCPGTSTS NKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYE EEF
Sbjct: 328 MDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYEAEEF 387

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           +E LQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR
Sbjct: 388 LEALQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 447

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFTFLRSIKSVH 180
           VKHFLNLFGVERPAFKDWKFKEKTD  FLSNHV+I +KQEE WN +EK   FLRS+KS  
Sbjct: 448 VKHFLNLFGVERPAFKDWKFKEKTDHSFLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGP 507

Query: 181 HANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 240
           H  A TGKP VVPK EKQVS D+TTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV
Sbjct: 508 HTTATTGKPDVVPKPEKQVSCDKTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKV 567

Query: 241 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLT 300
           CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPP+ELKKIISQVATEIHGLYVLT
Sbjct: 568 CSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLT 627

Query: 301 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICIS 360
           SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASK ELGRAINSNEYSKVMNEIC+S
Sbjct: 628 SSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVS 687

Query: 361 HGSSWTLKSGDGNSR 375
           HGSSWTLKSGDGNSR
Sbjct: 688 HGSSWTLKSGDGNSR 702

[Close]
BLAST of Cucsat.G11786.T14 vs. ExPASy TrEMBL
Match: A0A6J1C4C6 (DNA-directed RNA polymerase III subunit RPC5 OS=Momordica charantia OX=3673 GN=LOC111008259 PE=4 SV=1)

HSP 1 Score: 645 bits (1664), Expect = 6.38e-227
Identity = 319/377 (84.62%), Postives = 345/377 (91.51%), Query Frame = 0 

Query: 1   MDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYETEEF 60
           M+SLCPG  TS  KP+GPSK+YLLSLSL+ERIKKLL+EGPPVQRFSALKHYAPDYE EEF
Sbjct: 329 MNSLCPGACTSSIKPRGPSKRYLLSLSLDERIKKLLSEGPPVQRFSALKHYAPDYEAEEF 388

Query: 61  IETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDR 120
           IE LQQYAQLVQGLWV KS FL+PQDG GRCARDFVL LFSKNP++SSSQINVPKSLRD+
Sbjct: 389 IEALQQYAQLVQGLWVAKSSFLLPQDGGGRCARDFVLCLFSKNPLISSSQINVPKSLRDK 448

Query: 121 VKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVEKGFT--FLRSIKS 180
            KHFLNLF VERPAFKDWKF+EKTDR FL+N++ I +KQE++W +VE+G T  F  S+KS
Sbjct: 449 AKHFLNLFAVERPAFKDWKFREKTDRSFLNNYLDIVQKQEKIWRSVEEGITNSFRGSVKS 508

Query: 181 VHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNH 240
             HANAATGKP +VPK EKQVS D+ TTKSS+APLNRK  MSDETREALPKALQKLFQNH
Sbjct: 509 GSHANAATGKPDIVPKTEKQVSFDKATTKSSSAPLNRKSTMSDETREALPKALQKLFQNH 568

Query: 241 KVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYV 300
           KVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKII QVATEIHGLYV
Sbjct: 569 KVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIIGQVATEIHGLYV 628

Query: 301 LTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEIC 360
           +TSSPEHPEYDPLRKV+IQLLRGRGPKAVLKKADVLEASK ELGRAINSNEY+KVMNEIC
Sbjct: 629 MTSSPEHPEYDPLRKVIIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYTKVMNEIC 688

Query: 361 ISHGSSWTLKSGDGNSR 375
           +SHGSSW LKSGDGNSR
Sbjct: 689 VSHGSSWVLKSGDGNSR 705

The following BLAST results are available for this feature:
BLAST of Cucsat.G11786.T14 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G11786.T14 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149158.11.18e-267100.00DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis sativus] >KGN53... [more]
TYK16700.18.11e-24692.53DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw... [more]
KAA0044763.11.36e-24592.53DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo var. makuw... [more]
XP_008453719.11.79e-24592.53PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucumis melo... [more]
XP_038876785.14.76e-22987.27DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Benincasa hispida][more]
BLAST of Cucsat.G11786.T14 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUN55.72e-268100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1[more]
A0A5D3CZA93.92e-24692.53DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak... [more]
A0A5A7TMP06.59e-24692.53DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo var. mak... [more]
A0A1S3BX098.68e-24692.53DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 ... [more]
A0A6J1C4C66.38e-22784.62DNA-directed RNA polymerase III subunit RPC5 OS=Momordica charantia OX=3673 GN=L... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006886DNA-directed RNA polymerase III subunit Rpc5PFAMPF04801Sin_Ncoord: 8..169
e-value: 3.7E-32
score: 112.1
IPR006886DNA-directed RNA polymerase III subunit Rpc5PANTHERPTHR12069DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5coord: 1..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..216

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G11786Cucsat.G11786gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G11786.T14.E1Cucsat.G11786.T14.E1exon
Cucsat.G11786.T14.E2Cucsat.G11786.T14.E2exon
Cucsat.G11786.T14.E3Cucsat.G11786.T14.E3exon
Cucsat.G11786.T14.E4Cucsat.G11786.T14.E4exon
Cucsat.G11786.T14.E5Cucsat.G11786.T14.E5exon
Cucsat.G11786.T14.E6Cucsat.G11786.T14.E6exon
Cucsat.G11786.T14.E7Cucsat.G11786.T14.E7exon
Cucsat.G11786.T14.E8Cucsat.G11786.T14.E8exon
Cucsat.G11786.T14.E9Cucsat.G11786.T14.E9exon
Cucsat.G11786.T14.E10Cucsat.G11786.T14.E10exon
Cucsat.G11786.T14.E11Cucsat.G11786.T14.E11exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G11786.T14.C1Cucsat.G11786.T14.C1CDS
Cucsat.G11786.T14.C2Cucsat.G11786.T14.C2CDS
Cucsat.G11786.T14.C3Cucsat.G11786.T14.C3CDS
Cucsat.G11786.T14.C4Cucsat.G11786.T14.C4CDS
Cucsat.G11786.T14.C5Cucsat.G11786.T14.C5CDS
Cucsat.G11786.T14.C6Cucsat.G11786.T14.C6CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G11786.T14Cucsat.G11786.T14-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity