Cucsat.G11411.T2 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G11411.T2
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionEukaryotic translation initiation factor 5A
Locationctg1798: 731509 .. 734095 (-)
RNA-Seq ExpressionCucsat.G11411.T2
SyntenyCucsat.G11411.T2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAAAGAATATCAACATAGTTTAGGGGCTCGCATCAGAAACCCTAATTGATACGATACGTGGCCGGTTGAAACGTGATGCTATAAATTGGTCTCGTCCTCTTGACTCGTACTCTCCTCCTTCCTCCCGTTTTCCTTCCGCTTCCACCGAAATCCCACTGTGAACACAGAAGAAGAAGCCCACCGGAGGCTGTAGAAGAACGAAATCAATCTTTAGTCATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACGTACCCACAACAGGCCGGAGCTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGATTTGTTTGTGTTTATTGCGATGATTTGATTTTTTTTTTCTCATCGGTTGTGTTTGTTTTATTGTGTGGTTTGATTTATGTTGTTTAGGGTTGAGTTTTGGATCGAGCGATTTAGATCTTTGATTGATATTCGAGGGTTTTCTTTTTCTGGATTAATGATTCTTATACTGTAAGTTTTTTTCTTCTTATGATTTTTGAGTCTTGGATTTGGAGAAATTGATGGATCTGATGTTGAAATTGACATTGACGATTATTCGGATCAATATTTGTTTGGAGTTTGGGGATTTTGTAATTATGACTTCGAAAGATCTCTTGATGGCTGAGTTTCGATTGGTCAACGATAAACAGTGTGTTATATTATCCTCTAATCCTTCCTATGAGGATGCTGGTGTTTATAGTTGTTTACAGTGTAGTTTTAGTTTAATATTGATTTTATCTGGAGAAGATAATTTCCACAGTGTCGTGTTTTTTCCTTTTTGGGTATTTCTTTGTCACCAGCCACACGGGGGTGAGTTTATGTTTGTTTGAGACTGTTATTGCTACCTGACATTAATTATTGAAAAAGTATAACGAGGGTCCAAAAGGACAAATTGATTAATACTACTAAATTATAACTTTAGGCATTGAAGTGGATAAGCACTTGATCTTCCTTAATTTGAAAGTGTACTCTCTAGAAGGCATTTCTGCATACCTAATCCCACTAATTTATGTTACTTTTCTTTGGGTTGTATGGTAATGCAGGTGGTTGAGGTTTCAACTTCTAAGACAGGAAAGCACGGCCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGGGAGTCTATTATAAAGCCTTCAAACTATTCATCTGTAACGATTTACCATTTTCACTAACGGTCTTTGTTTCATGGTTTGTAGGTGCCCCATGTTAATCGTACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTACCTTGTTTTTATGGAGTTTGTTTGACTTGTTGGGTCTTGCTGTTTTCAAGAAACTTATTCATAACGATATAATGTTATATCTGTTTTATTAGATTTCTAGATTTATTTGGAAGTTTTCATGCTTCAGATTGTTTTGGTAATCAATTTTATCTGTGAAACCCTGTTAGATAGATTGTTTGTCCAGAATGTAATTTGGAAATAAAGGAGCAAATATTTGTGTGGAGAGATTGTTATACAATCATAGATGGAGAAGGAAGCAATGAATCATTTATATGTGTTGAAGTGTGTAAAGCCTCGTTCCATTATTTGAATGATGTTTTTCTTTGGGTGCAGGTGAGTCTTTTAACTGACAGTGGTGATACCAAGGATGATCTGAGACTTCCAACTGATGATAATCTGCTCAAACAGGTAAAGGCACACATGTACACTTGAAAAGAACAATCCGTGCACTCGAGATAGTTTTGTATATTTGAAAAAGAGCTTTGATGAAGTTAATCGTGCAAGCATCATTATTTTTTCCTTTTTGTAAGAGGGAACCTCATTCCTTCTGTTTCCATTTCATGCTTAATATTCCATTCTCAAGATATTGTGAAGATATGGTCATATGGGTTTATTCCTCAATATCATGTTCTTGTGATGATGATTTACCAATATAAAAACAAAAGCTGAACATGTCCTTTGTATTCACAGATTAAGGAAGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTCAAGGATATTGGCCCGAAGTAGGTCTTGTTGCACACAAAGTTAAAAGTTGTGGTCATCGACTGCTTTTTATTGCCGAATTCCTCTATTGAATCTTTTAAATGATGGTATAATTAATTAGCAGACTCTGTATCTGTTAACGCCTCATTCTTCTCGTCCCTCCATTCCCTTTCTCCCTTCTCTTCTCATCTCATCTCATCTCATCTCACCTTCTGGCCCAGGATGTATGGTTTGTTCGTGCATCATTACTGTGCTTTATGTTGTGTTATTTTATGATATTGGGTGTAATGTTATTGGGTTTTTGGATGCTTACTTTGATAATCGAAGTGAATAATTTTTGCGAAATCATCAGTTGTCTCCTGAAATTCGTTCTCTTAGTGCTTTAGAGTTGGAACTGTATTCAATTTTCTTTTGGGTTAGTGGTGGGATTTGGAAATTACACTTGGTTGTTTTGACT

Coding sequence (CDS)

ATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACGTACCCACAACAGGCCGGAGCTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGAAAGCACGGCCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTGCCCCATGTTAATCGTACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTACCTTGTTTTTATGGAGTTTGTTTGACTTGTTGGGTCTTGCTGTTTTCAAGAAACTTATTCATAACGATATAATGTTATATCTGTTTTATTAG

Protein sequence

MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTLFLWSLFDLLGLAVFKKLIHNDIMLYLFY
Homology
[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-53
Identity = 100/105 (95.24%), Postives = 101/105 (96.19%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 106
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-53
Identity = 100/105 (95.24%), Postives = 101/105 (96.19%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 106
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-53
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAG IRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 106
           VGIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy Swiss-Prot
Match: Q9AXQ3 (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-53
Identity = 100/105 (95.24%), Postives = 100/105 (95.24%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 106
           V IDIF AKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.1e-53
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 106
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. NCBI nr
Match: XP_004145502.1 (eukaryotic translation initiation factor 5A [Cucumis sativus] >KGN55431.1 hypothetical protein Csa_012217 [Cucumis sativus])

HSP 1 Score: 217 bits (552), Expect = 7.42e-70
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 105
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. NCBI nr
Match: MBA0609022.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 215 bits (548), Expect = 1.09e-69
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 105
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. NCBI nr
Match: KJB17392.1 (hypothetical protein B456_003G098700 [Gossypium raimondii])

HSP 1 Score: 214 bits (546), Expect = 1.11e-69
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS 103
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS 103

[Close]
BLAST of Cucsat.G11411.T2 vs. NCBI nr
Match: KJB17391.1 (hypothetical protein B456_003G098700 [Gossypium raimondii])

HSP 1 Score: 215 bits (548), Expect = 1.16e-69
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTLFLWSLFDLLGLAVFK 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS+   + L ++  L VF 
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSSFVSFPL-EVACLLVFF 120

Query: 121 KLIHND 126
            L+ + 
Sbjct: 121 NLLISS 125

[Close]
BLAST of Cucsat.G11411.T2 vs. NCBI nr
Match: MBA0801832.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 215 bits (548), Expect = 1.51e-69
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 105
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy TrEMBL
Match: A0A0A0L5K9 (Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_4G651970 PE=3 SV=1)

HSP 1 Score: 217 bits (552), Expect = 3.59e-70
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 105
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy TrEMBL
Match: A0A7J8R6P5 (Eukaryotic translation initiation factor 5A OS=Gossypium davidsonii OX=34287 GN=Godav_021155 PE=3 SV=1)

HSP 1 Score: 215 bits (548), Expect = 5.26e-70
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 105
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy TrEMBL
Match: A0A0D2MH63 (Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B456_003G098700 PE=3 SV=1)

HSP 1 Score: 214 bits (546), Expect = 5.37e-70
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS 103
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS 103

[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy TrEMBL
Match: A0A0D2QKH7 (Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B456_003G098700 PE=3 SV=1)

HSP 1 Score: 215 bits (548), Expect = 5.62e-70
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTLFLWSLFDLLGLAVFK 120
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS+   + L ++  L VF 
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSSFVSFPL-EVACLLVFF 120

Query: 121 KLIHND 126
            L+ + 
Sbjct: 121 NLLISS 125

[Close]
BLAST of Cucsat.G11411.T2 vs. ExPASy TrEMBL
Match: A0A7J9GWA7 (Eukaryotic translation initiation factor 5A OS=Gossypium harknessii OX=34285 GN=Gohar_012175 PE=3 SV=1)

HSP 1 Score: 215 bits (548), Expect = 7.31e-70
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSTL 105
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVS L
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 105

The following BLAST results are available for this feature:
BLAST of Cucsat.G11411.T2 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P690391.3e-5395.24Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40... [more]
P690401.3e-5395.24Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI... [more]
Q9AXJ41.7e-5394.29Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV... [more]
Q9AXQ32.3e-5395.24Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE... [more]
P563375.1e-5394.29Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI... [more]
BLAST of Cucsat.G11411.T2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145502.17.42e-7099.05eukaryotic translation initiation factor 5A [Cucumis sativus] >KGN55431.1 hypoth... [more]
MBA0609022.11.09e-6998.10hypothetical protein [Gossypium davidsonii][more]
KJB17392.11.11e-6999.03hypothetical protein B456_003G098700 [Gossypium raimondii][more]
KJB17391.11.16e-6984.92hypothetical protein B456_003G098700 [Gossypium raimondii][more]
MBA0801832.11.51e-6998.10hypothetical protein [Gossypium harknessii][more]
BLAST of Cucsat.G11411.T2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5K93.59e-7099.05Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_4G... [more]
A0A7J8R6P55.26e-7098.10Eukaryotic translation initiation factor 5A OS=Gossypium davidsonii OX=34287 GN=... [more]
A0A0D2MH635.37e-7099.03Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B... [more]
A0A0D2QKH75.62e-7084.92Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B... [more]
A0A7J9GWA77.31e-7098.10Eukaryotic translation initiation factor 5A OS=Gossypium harknessii OX=34285 GN=... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 17..102
e-value: 5.0E-33
score: 111.7
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 1..105
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..85
e-value: 1.1E-43
score: 148.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR11673:SF42BNAA07G09420D PROTEINcoord: 1..105
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 15..93

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G11411Cucsat.G11411gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G11411.T2.E1Cucsat.G11411.T2.E1exon
Cucsat.G11411.T2.E2Cucsat.G11411.T2.E2exon
Cucsat.G11411.T2.E3Cucsat.G11411.T2.E3exon
Cucsat.G11411.T2.E4Cucsat.G11411.T2.E4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G11411.T2.C3Cucsat.G11411.T2.C3CDS
Cucsat.G11411.T2.C2Cucsat.G11411.T2.C2CDS
Cucsat.G11411.T2.C1Cucsat.G11411.T2.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G11411.T2Cucsat.G11411.T2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006413 translational initiation
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity