Cucsat.G11304.T7 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G11304.T7
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Nuclear nucleic acid-binding protein C1D
Location	ctg1798: 688395 .. 690770 (+)
RNA-Seq Expression	Cucsat.G11304.T7
Synteny	Cucsat.G11304.T7

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTAAAGGAAGCAAAAAAAACTCCACACACTGAGATCGGAAGAACATCGGCCCAAACTGCCGCCGTAAACTTCTCTAGTTCGAACCCAAAAGCCCTAACCGTCCGTTTTCCCCTCTACGATTATCAACCACCACGGTCTGAGCTTCTCTCCGCCGTCACCATATCATTCTAAGGATTTGAATCTCGTATCTTCGCTATCTCTTTGTCCCCCTGATAGAGACGGAGTTCAAAATTGGGGTCAAATATGGAGGGAGGTGTTCGAGATTTCGCTGTTGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCTTGTCTATCGCCGAGCCTGACGTCCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATGTAATTTTTTTTTTTTATTACGAATAGTTCTTTATTATTAATTTGTTGTTGTTGTTGTTGTTGTTTATTCTGTATTATTGAGGTGAAGTTTTTGTTTGTTTTTGGTAATTTGCAGTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGTAATTATTCTCATACCTTGTATCTGGTGATTAAAGCTGAAATTTTCTCACATGGGTTATCATGTTATTCTCTTGTTATTATTCAAATGTTCGTTCTTATTTTTTGTTATGCATGTAGGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGGTATGTTTGACTTCTAATTTTTTTGAGTTTATTTCACCATCGTTTCCTTGTTTTTTTCATTTTTTTTTTTTTTTGCTTCCTTTAATGCTAGATTGATAACTTGCATTTGAATTTCTTCATGAAGCGCCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTAACTCAAGGTTGGTTGAATTTGTTTGCTTTTTTATTTTGGGGAGGGGGGGTTTCTGTGTCTGATTCCCTTTGATGAAGTAAATATTTCAATATTTTTCAGAGCAAAAGCTGAGTATGAGGGATATCAGTAGAGGAAAGGGGCAAAAAATGAAGCAATTAGAGAGGAACGTACAGAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCTAAGGAATTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATTGTAATGGAGGTTTGCAGGGTCCATTGTGTGGGGATGCTTTAGATGATGATGCCCTGCAGGAGGATTGAATCCTGGATTTCACTTTGGTATCTACTTATCACATTTATTTCTAATTTTGCTGTCCTCCTTTGATAAATGCAAGCTTTTCCATATGCTTGTTGATGGAATGAATTTTGATTTTCTTAATAAAATTTTCCTTTTAGTTCTATTGCTCATTCTTGTACCTCTGATTGTCGTTAGCTTGCTTAGCTTAATAGAATTGAGTTTGAAATTTAGAATTGTAGTCTTTTTATGGACGTCTTTGATGTGTTTTACATCGTGATATGTATGTATATCACGTTCTTTTTATCATGGTTTAGTCCAACGCTTGTCTAGATTAGCTTTCTTAGTGCTTAAAACCTTTAAAACACTTTTATAAACACTTAACCCACAATCCAAACACCCTCTAAGCAATATTTTAGCGAAGTTTCAATTGCAATGAATATAGTTTTTCTTCAGTTGAATAGTTGAACTGCCTCCCCTTCCCTCAGCAAACCGAATGCCATCAACTAAAATAAAATTATTTTTATTCATTCCATGCAAACAAATCTAATACTTCCCTTCATATATTCACATTTACTTGCCATGTATTCCTCTATGTTTTAACAATTCCTCACCTTTACATCTTTCAGGAGTATGAAAACCAGACTCTCTTGTGCCCTTAATTATCCCAACTCTCGAAGAATTGGTCCATTTTGAAGTTGGATTTGGACGTCTGTTTTTCCCTTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAAATCGTTTTTCCTTCACTCTGTTTAGAAGTCTTTATATATATGTGTGCATTTTGGAGTTTCAATCCCATCATAAGTTACTATTAGGACATTAAATCGTTTTTTGTTTTCTTAATAGTGTGATCATATGAACAATACATGATCTTGATCAAAGGAGTCTGTGCTTTTTACATGTAAAGTAGCCTACTTCGGTAGCTGACTTTCTAGTGTTTTTTGGGTCTGTATATCAGTCATCCTCTTGATACTCGAATTAGCCCTTTTTGCCATAAACTAATAATAGTATGTTCATTTTGATACCGCTATCGAAGCAGGC

Coding sequence (CDS)

ATGGAGGGAGGTGTTCGAGATTTCGCTGTTGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCTTGTCTATCGCCGAGCCTGACGTCCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGATTGA

Protein sequence

MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKD

Homology

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-06
Identity = 29/98 (29.59%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 2   EGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLA 61
           +  V D+   P ++ D++     ++  VQ  + + +S++  D L ++ PL++A+  L+ A
Sbjct: 4   DAAVEDY---PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSA 63

Query: 62  RVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLE 100
               ++F + L   GV+  DHPIK ELER+  Y +K++
Sbjct: 64  YALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVK 98

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-05
Identity = 25/95 (26.32%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ D + T   ++  V   L + +S++  ++L +++PL++A+  L+ A    ++F + 
Sbjct: 11  PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 107
           L   G++  +HP+K ELER+  Y +K++      K
Sbjct: 71  LATQGINPKEHPVKQELERIRTYMNKVKEIADKKK 105

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy Swiss-Prot
Match: Q32PE4 (Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-05
Identity = 24/95 (25.26%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ + + T  +++  V   L + +S++  ++L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHEYLSTFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 107
           L   GV+  +HP+K ELER+ +Y ++++      K
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEITDKKK 105

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy Swiss-Prot
Match: Q7TSU0 (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.4e-05
Identity = 24/95 (25.26%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ +S+     ++  V   L + +S++  ++L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHESLSALESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 107
           L   GV+  +HP+K ELER+ +Y ++++      K
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEITDKKK 105

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy Swiss-Prot
Match: Q13901 (Nuclear nucleic acid-binding protein C1D OS=Homo sapiens OX=9606 GN=C1D PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 23/95 (24.21%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ + +    +++  V   L + +S++  ++L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 107
           L   GV+  +HP+K ELER+ +Y ++++      K
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEITDKKK 105

[Close]

BLAST of Cucsat.G11304.T7 vs. NCBI nr
Match: XP_004145496.1 (nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypothetical protein Csa_012234 [Cucumis sativus])

HSP 1 Score: 202 bits (515), Expect = 5.95e-64
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 106
           ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 106

[Close]

BLAST of Cucsat.G11304.T7 vs. NCBI nr
Match: XP_008452844.1 (PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa] >TYK20014.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (500), Expect = 1.14e-61
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVE VQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 106
           ARVTTTLFALKLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSK 106

[Close]

BLAST of Cucsat.G11304.T7 vs. NCBI nr
Match: XP_038897508.1 (nuclear nucleic acid-binding protein C1D [Benincasa hispida])

HSP 1 Score: 193 bits (491), Expect = 2.57e-60
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 106
           A+VTTTLFALKLRCSGV LDDHPIKSELERLSLYQDKLERFIGLSK
Sbjct: 61  AKVTTTLFALKLRCSGVLLDDHPIKSELERLSLYQDKLERFIGLSK 106

[Close]

BLAST of Cucsat.G11304.T7 vs. NCBI nr
Match: KAG6591524.1 (Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188 bits (477), Expect = 3.14e-58
Identity = 98/107 (91.59%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRD AVVPEKVMDSVKTTL+NVEQVQTHLIS LSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKD 107
           ARVTTTLFALK+RCSGVH DDHPI +ELERLSLYQDKLERFIGLSK+
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKE 107

[Close]

BLAST of Cucsat.G11304.T7 vs. NCBI nr
Match: XP_022976264.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima])

HSP 1 Score: 188 bits (477), Expect = 3.44e-58
Identity = 98/107 (91.59%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRD AVVPEKVMDSVKTTL+NVEQVQTHLIS LSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKD 107
           ARVTTTLFALK+RCSGVH DDHPI +ELERLSLYQDKLERFIGLSK+
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKE 107

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy TrEMBL
Match: A0A0A0L118 (Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651890 PE=3 SV=1)

HSP 1 Score: 202 bits (515), Expect = 2.88e-64
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 106
           ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 106

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy TrEMBL
Match: A0A5D3D8Y3 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001320 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 5.50e-62
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVE VQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 106
           ARVTTTLFALKLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSK 106

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy TrEMBL
Match: A0A1S3BUS6 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 5.50e-62
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVE VQTHLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 106
           ARVTTTLFALKLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSK 106

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy TrEMBL
Match: A0A6J1IN17 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC111476708 PE=3 SV=1)

HSP 1 Score: 188 bits (477), Expect = 1.67e-58
Identity = 98/107 (91.59%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVRD AVVPEKVMDSVKTTL+NVEQVQTHLIS LSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKD 107
           ARVTTTLFALK+RCSGVH DDHPI +ELERLSLYQDKLERFIGLSK+
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKE 107

[Close]

BLAST of Cucsat.G11304.T7 vs. ExPASy TrEMBL
Match: A0A6J1FIR0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111445751 PE=3 SV=1)

HSP 1 Score: 187 bits (475), Expect = 3.36e-58
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSK 106
           +R TTTLFALKLRCSGVH DDHPIKSELERLSLYQ+KLERFIGLSK
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSK 106

The following BLAST results are available for this feature:

BLAST of Cucsat.G11304.T7 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XJ97	2.9e-06	29.59	Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1	[more]
Q5ZHS3	1.1e-05	26.32	Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV...	[more]
Q32PE4	4.1e-05	25.26	Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1	[more]
Q7TSU0	5.4e-05	25.26	Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D P...	[more]
Q13901	1.6e-04	24.21	Nuclear nucleic acid-binding protein C1D OS=Homo sapiens OX=9606 GN=C1D PE=1 SV=...	[more]

BLAST of Cucsat.G11304.T7 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145496.1	5.95e-64	100.00	nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypotheti...	[more]
XP_008452844.1	1.14e-61	96.23	PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1...	[more]
XP_038897508.1	2.57e-60	96.23	nuclear nucleic acid-binding protein C1D [Benincasa hispida]	[more]
KAG6591524.1	3.14e-58	91.59	Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp....	[more]
XP_022976264.1	3.44e-58	91.59	nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima]	[more]

BLAST of Cucsat.G11304.T7 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L118	2.88e-64	100.00	Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651...	[more]
A0A5D3D8Y3	5.50e-62	96.23	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUS6	5.50e-62	96.23	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742...	[more]
A0A6J1IN17	1.67e-58	91.59	Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1FIR0	3.36e-58	92.45	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007146	Sas10/Utp3/C1D	PFAM	PF04000	Sas10_Utp3	coord: 21..97 e-value: 4.1E-8 score: 33.7
IPR011082	Exosome-associated factor Rrp47/DNA strand repair C1D	PANTHER	PTHR15341	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	coord: 11..105
None	No IPR available	PANTHER	PTHR15341:SF5	EXOSOME-ASSOCIATED FACTOR RRP47/DNA STRAND REPAIR C1D-RELATED	coord: 11..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G11304	Cucsat.G11304	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G11304.T7.E1	Cucsat.G11304.T7.E1	exon
Cucsat.G11304.T7.E2	Cucsat.G11304.T7.E2	exon
Cucsat.G11304.T7.E3	Cucsat.G11304.T7.E3	exon
Cucsat.G11304.T7.E4	Cucsat.G11304.T7.E4	exon
Cucsat.G11304.T7.E5	Cucsat.G11304.T7.E5	exon
Cucsat.G11304.T7.E6	Cucsat.G11304.T7.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G11304.T7.C1	Cucsat.G11304.T7.C1	CDS
Cucsat.G11304.T7.C2	Cucsat.G11304.T7.C2	CDS
Cucsat.G11304.T7.C3	Cucsat.G11304.T7.C3	CDS
Cucsat.G11304.T7.C4	Cucsat.G11304.T7.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G11304.T7	Cucsat.G11304.T7-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding