Csor.00g311110.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g311110.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr15: 512189 .. 512875 (+)
Sequence length528
RNA-Seq ExpressionCsor.00g311110.m01
SyntenyCsor.00g311110.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAATAGAAGGGAGAGTTTGATGATTATGTGGGAGGTAAGGGATATCAGGATGAAAGAGAACACGCACCGTCAAAGTCACCTCTTGACGATCCTTAGTATAGGAAACAAAACTGAAAGTGTAAGGTCGAACACGAATATTGAATATAGAGGGCTTTGGAAGCCATGGAATGCAGAAATGAGTTCCTTTTCACCGACGATGGTGTTGTCTGTACGACCTCCAAATGGATGGAAGATGACTGCTCGTTCACCCATGCGTTCGGTGTACGTAGAGGCATTTACAACCGAGGATACCACGACGACACCAACAGCAAAGCCAGCAACCTTGGTAAGCAGGTGAGTCGTTCTTGAGAAGAAGCTATTCATCATTCTTGAGAAGAAGGGTTTTGAAGAAGAACCGAGGATACCACGCCGACACCAACAGCAAAGCCAGCAACCTTGGTAAGTAGGTGAGTCGTTCCTGAGAAGAAGCTATTCATCTTTCTTGAGAAGTAGGGTTTTGAAGAAGGGTCTTGAGAACGGAAGAAGTGGCCCGACACTCGGCCGCCTTGCCCAATCCAAGGGCGGCCCAAGCCACGGGCGGCCTAGCTTAAGCAGCCCAACCAAACGGGAGGCCCAGCTTAAGCAGGCGCAACCCACAGGCGGCCCAGCTGAAGCAGCCCAGCCCACGGGCGGCCCAGCTTAA

mRNA sequence

ATGGTTAATAGAAGGGAGAGTTTGATGATTATGTGGGAGGTAAGGGATATCAGGATGAAAGAGAACACGCACCGTCAAAGTCACCTCTTGACGATCCTTAGTATAGGAAACAAAACTGAAAGTGTAAGGTCGAACACGAATATTGAATATAGAGGGCTTTGGAAGCCATGGAATGCAGAAATGAGTTCCTTTTCACCGACGATGGTGTTGTCTGTACGACCTCCAAATGGATGGAAGATGACTGCTCGTTCACCCATGCGTTCGGTGTACGTAGAGGCATTTACAACCGAGGATACCACGACGACACCAACAGCAAAGCCAGCAACCTTGGTAAGCAGGGTTTTGAAGAAGGGTCTTGAGAACGGAAGAAGTGGCCCGACACTCGGCCGCCTTGCCCAATCCAAGGGCGGCCCAAGCCACGGGCGGCCTAGCTTAAGCAGCCCAACCAAACGGGAGGCCCAGCTTAAGCAGGCGCAACCCACAGGCGGCCCAGCTGAAGCAGCCCAGCCCACGGGCGGCCCAGCTTAA

Coding sequence (CDS)

ATGGTTAATAGAAGGGAGAGTTTGATGATTATGTGGGAGGTAAGGGATATCAGGATGAAAGAGAACACGCACCGTCAAAGTCACCTCTTGACGATCCTTAGTATAGGAAACAAAACTGAAAGTGTAAGGTCGAACACGAATATTGAATATAGAGGGCTTTGGAAGCCATGGAATGCAGAAATGAGTTCCTTTTCACCGACGATGGTGTTGTCTGTACGACCTCCAAATGGATGGAAGATGACTGCTCGTTCACCCATGCGTTCGGTGTACGTAGAGGCATTTACAACCGAGGATACCACGACGACACCAACAGCAAAGCCAGCAACCTTGGTAAGCAGGGTTTTGAAGAAGGGTCTTGAGAACGGAAGAAGTGGCCCGACACTCGGCCGCCTTGCCCAATCCAAGGGCGGCCCAAGCCACGGGCGGCCTAGCTTAAGCAGCCCAACCAAACGGGAGGCCCAGCTTAAGCAGGCGCAACCCACAGGCGGCCCAGCTGAAGCAGCCCAGCCCACGGGCGGCCCAGCTTAA

Protein sequence

MVNRRESLMIMWEVRDIRMKENTHRQSHLLTILSIGNKTESVRSNTNIEYRGLWKPWNAEMSSFSPTMVLSVRPPNGWKMTARSPMRSVYVEAFTTEDTTTTPTAKPATLVSRVLKKGLENGRSGPTLGRLAQSKGGPSHGRPSLSSPTKREAQLKQAQPTGGPAEAAQPTGGPA
Homology
[Close]
BLAST of Csor.00g311110.m01 vs. NCBI nr
Match: KAG6578400.1 (hypothetical protein SDJN03_22848, partial [Cucurbita argyrosperma subsp. sororia] >KAG6578406.1 hypothetical protein SDJN03_22854, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342 bits (877), Expect = 2.04e-118
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MVNRRESLMIMWEVRDIRMKENTHRQSHLLTILSIGNKTESVRSNTNIEYRGLWKPWNAE 60
           MVNRRESLMIMWEVRDIRMKENTHRQSHLLTILSIGNKTESVRSNTNIEYRGLWKPWNAE
Sbjct: 1   MVNRRESLMIMWEVRDIRMKENTHRQSHLLTILSIGNKTESVRSNTNIEYRGLWKPWNAE 60

Query: 61  MSSFSPTMVLSVRPPNGWKMTARSPMRSVYVEAFTTEDTTTTPTAKPATLVSRVLKKGLE 120
           MSSFSPTMVLSVRPPNGWKMTARSPMRSVYVEAFTTEDTTTTPTAKPATLVSRVLKKGLE
Sbjct: 61  MSSFSPTMVLSVRPPNGWKMTARSPMRSVYVEAFTTEDTTTTPTAKPATLVSRVLKKGLE 120

Query: 121 NGRSGPTLGRLAQSKGGPSHGRPSLSSPTKREAQLKQAQPTGGPAEAAQPTGGPA 175
           NGRSGPTLGRLAQSKGGPSHGRPSLSSPTKREAQLKQAQPTGGPAEAAQPTGGPA
Sbjct: 121 NGRSGPTLGRLAQSKGGPSHGRPSLSSPTKREAQLKQAQPTGGPAEAAQPTGGPA 175

The following BLAST results are available for this feature:
BLAST of Csor.00g311110.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g311110.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578400.12.04e-118100.00hypothetical protein SDJN03_22848, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g311110.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g311110.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..175

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g311110Csor.00g311110gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g311110.m01.CDS01Csor.00g311110.m01.CDS01CDS
Csor.00g311110.m01.CDS02Csor.00g311110.m01.CDS02CDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g311110.m01.start_codon01Csor.00g311110.m01.start_codon01start_codon


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g311110.m01.initial01Csor.00g311110.m01.initial01initial


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g311110.m01.intron01Csor.00g311110.m01.intron01intron


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g311110.m01.terminal01Csor.00g311110.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g311110.m01.stop_codon01Csor.00g311110.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g311110.m01Csor.00g311110.m01-proteinpolypeptide