Csor.00g311110 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g311110
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr15: 512189 .. 512875 (+)
RNA-Seq Expression	Csor.00g311110
Synteny	Csor.00g311110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAATAGAAGGGAGAGTTTGATGATTATGTGGGAGGTAAGGGATATCAGGATGAAAGAGAACACGCACCGTCAAAGTCACCTCTTGACGATCCTTAGTATAGGAAACAAAACTGAAAGTGTAAGGTCGAACACGAATATTGAATATAGAGGGCTTTGGAAGCCATGGAATGCAGAAATGAGTTCCTTTTCACCGACGATGGTGTTGTCTGTACGACCTCCAAATGGATGGAAGATGACTGCTCGTTCACCCATGCGTTCGGTGTACGTAGAGGCATTTACAACCGAGGATACCACGACGACACCAACAGCAAAGCCAGCAACCTTGGTAAGCAGGTGAGTCGTTCTTGAGAAGAAGCTATTCATCATTCTTGAGAAGAAGGGTTTTGAAGAAGAACCGAGGATACCACGCCGACACCAACAGCAAAGCCAGCAACCTTGGTAAGTAGGTGAGTCGTTCCTGAGAAGAAGCTATTCATCTTTCTTGAGAAGTAGGGTTTTGAAGAAGGGTCTTGAGAACGGAAGAAGTGGCCCGACACTCGGCCGCCTTGCCCAATCCAAGGGCGGCCCAAGCCACGGGCGGCCTAGCTTAAGCAGCCCAACCAAACGGGAGGCCCAGCTTAAGCAGGCGCAACCCACAGGCGGCCCAGCTGAAGCAGCCCAGCCCACGGGCGGCCCAGCTTAA

mRNA sequence

ATGGTTAATAGAAGGGAGAGTTTGATGATTATGTGGGAGGTAAGGGATATCAGGATGAAAGAGAACACGCACCGTCAAAGTCACCTCTTGACGATCCTTAGTATAGGAAACAAAACTGAAAGTGTAAGGTCGAACACGAATATTGAATATAGAGGGCTTTGGAAGCCATGGAATGCAGAAATGAGTTCCTTTTCACCGACGATGGTGTTGTCTGTACGACCTCCAAATGGATGGAAGATGACTGCTCGTTCACCCATGCGTTCGGTGTACGTAGAGGCATTTACAACCGAGGATACCACGACGACACCAACAGCAAAGCCAGCAACCTTGGTAAGCAGGGTTTTGAAGAAGGGTCTTGAGAACGGAAGAAGTGGCCCGACACTCGGCCGCCTTGCCCAATCCAAGGGCGGCCCAAGCCACGGGCGGCCTAGCTTAAGCAGCCCAACCAAACGGGAGGCCCAGCTTAAGCAGGCGCAACCCACAGGCGGCCCAGCTGAAGCAGCCCAGCCCACGGGCGGCCCAGCTTAA

Coding sequence (CDS)

ATGGTTAATAGAAGGGAGAGTTTGATGATTATGTGGGAGGTAAGGGATATCAGGATGAAAGAGAACACGCACCGTCAAAGTCACCTCTTGACGATCCTTAGTATAGGAAACAAAACTGAAAGTGTAAGGTCGAACACGAATATTGAATATAGAGGGCTTTGGAAGCCATGGAATGCAGAAATGAGTTCCTTTTCACCGACGATGGTGTTGTCTGTACGACCTCCAAATGGATGGAAGATGACTGCTCGTTCACCCATGCGTTCGGTGTACGTAGAGGCATTTACAACCGAGGATACCACGACGACACCAACAGCAAAGCCAGCAACCTTGGTAAGCAGGGTTTTGAAGAAGGGTCTTGAGAACGGAAGAAGTGGCCCGACACTCGGCCGCCTTGCCCAATCCAAGGGCGGCCCAAGCCACGGGCGGCCTAGCTTAAGCAGCCCAACCAAACGGGAGGCCCAGCTTAAGCAGGCGCAACCCACAGGCGGCCCAGCTGAAGCAGCCCAGCCCACGGGCGGCCCAGCTTAA

Protein sequence

MVNRRESLMIMWEVRDIRMKENTHRQSHLLTILSIGNKTESVRSNTNIEYRGLWKPWNAEMSSFSPTMVLSVRPPNGWKMTARSPMRSVYVEAFTTEDTTTTPTAKPATLVSRVLKKGLENGRSGPTLGRLAQSKGGPSHGRPSLSSPTKREAQLKQAQPTGGPAEAAQPTGGPA

Homology

[Close]

BLAST of Csor.00g311110 vs. NCBI nr
Match: KAG6578400.1 (hypothetical protein SDJN03_22848, partial [Cucurbita argyrosperma subsp. sororia] >KAG6578406.1 hypothetical protein SDJN03_22854, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342 bits (877), Expect = 2.04e-118
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MVNRRESLMIMWEVRDIRMKENTHRQSHLLTILSIGNKTESVRSNTNIEYRGLWKPWNAE 60
           MVNRRESLMIMWEVRDIRMKENTHRQSHLLTILSIGNKTESVRSNTNIEYRGLWKPWNAE
Sbjct: 1   MVNRRESLMIMWEVRDIRMKENTHRQSHLLTILSIGNKTESVRSNTNIEYRGLWKPWNAE 60

Query: 61  MSSFSPTMVLSVRPPNGWKMTARSPMRSVYVEAFTTEDTTTTPTAKPATLVSRVLKKGLE 120
           MSSFSPTMVLSVRPPNGWKMTARSPMRSVYVEAFTTEDTTTTPTAKPATLVSRVLKKGLE
Sbjct: 61  MSSFSPTMVLSVRPPNGWKMTARSPMRSVYVEAFTTEDTTTTPTAKPATLVSRVLKKGLE 120

Query: 121 NGRSGPTLGRLAQSKGGPSHGRPSLSSPTKREAQLKQAQPTGGPAEAAQPTGGPA 175
           NGRSGPTLGRLAQSKGGPSHGRPSLSSPTKREAQLKQAQPTGGPAEAAQPTGGPA
Sbjct: 121 NGRSGPTLGRLAQSKGGPSHGRPSLSSPTKREAQLKQAQPTGGPAEAAQPTGGPA 175

The following BLAST results are available for this feature:

BLAST of Csor.00g311110 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g311110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578400.1	2.04e-118	100.00	hypothetical protein SDJN03_22848, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g311110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g311110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g311110.m01	Csor.00g311110.m01	mRNA