Csor.00g300170.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGATAAGAACAACAACAACGAAGATGCATTAGGGTGGGGAATGAGTTTAAGCGGAATTGTTGGCGGCCCACAAGAAAGTGATCAGTTTAAGGCTGAATCTTATGTGACACTGAATATGAACAAGCGATTCAAGTTAAAGCCAGGGATTGCATATGTGACAGACGGCAATGCCAAGGCGATGGCTTTCCTTGTTAGCTCTAATTGGTCTCTATGAATTATGTGATTTGGTATATTGTTATAACAAATTGGCTGAATCTGAAGGCCATTCGGCAGATGTTCTTCATACAAAGTATATGGTAAAGTATTGAATTTGCTGCTTTTTCTTATTAGGTATTGAATTTGGCTGCATTTGTTGTTCCCAATTATGGTATTCTTTTTACTTTTGAAATTTGACTAAAAGTATTCGAATTTTTCTTTCAAACAGATGCAGATATCGATGAAAAAAAACATTCGCTTCTTAAGAATGAAGGCCGAAGAACGTTTATGTAATTGTTAAATTACATTTTTAGTCCTAAAATTTTGATGTTTGTGTAATTATAAATTTTTAAAATTTTAAAATTAAATTTTTGTCAAATAAAAGTGAACTAAAAATGTCGAGCTATTTATTTTGTTCATGCACTTATAATTTTTTAATTTTAAATATTTTTAAAATTATTATTATTATTTTTTTTTTTTTTGTGAAAAATAAAAGTTTTCTATAAAGGGGAGTGGGTTATCATCGGTGGATTTTGATCTTAAGAGACGTTTTTGTGGTCAGATTACTCTCTTCGTTTCGCAACGCAGCGCCTCGGTCTGGGTTTGAGACCTCATCGAATCTTCCAGAAAGCGAAATACGGCACCATGTCTGCAGGCAGGAAGATCACGTTGAAGAGTTCTGATGGCGAGATCTTTGAGGTCGACGAAGCTGTGGCCTTGGAGTCACAGACGATCAAGCACATGATTGAAGACGATTGCGCCGATAGTGGAATCCCTCTCCCTAACGTCAACAGCAAGATCTTGTCTAAGGTTATCGAGTACTGCAAGAAGCATGTCGAGTCCCCCAAGCCGGAGGATCGTACTGGCTCCGTCGACGATGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAAGCCACCCTGTTCGATCTCATTCTGGTTTGTCCATTCTACTTTCTTCAAGTTTTCTTGATTTTTCTTGCTTTCTGTATCTATGCCCTTCGATTGCGTGTGTAACCGGTTATTTGCTCCTTTTTTCTGGTTAAATTTGGGGTCTAGGGTTTCGGTGCTTCTTTGATTTGGGGCAAGGTTCTTTCGGTTCTAGCGTCGATTCTTGTTCTACGTTTGCATAGAACGTTTTCTGTTTTGGTCTGATGCTTGAATGAGATATCACAAATTGTTAAATGGGATGATATGAAATTACTGAAACGTGAATGCCTCCTGCAGAAATATATGATCTATTTAGTTAGGGGGGAATGCCTCCTGGAGTCGATAGGGGAGCCCATTTGTTGATTTAAAAGGGCATTGTGTGGAAGGTTTATACATATTTGTCATTGGGAAGCCTTGATATATCAAACGTTTGGCTGCAACCTTTGTTAGGAATTATACCCTCGAATCATGCGCGATGTTTCTTGTTTATCGTATGATGTAATTCTAGAACTACCAGCAATAGCCACACGAGTATTCCTAATACCATTCTACTAGTTTCTCATGTTCAATCCAATCTTTGAAGTTTGCGGGTGAATCTTTTTTCTCTTTACCAGTTGAACTTGATCTTTCCGCATTTTTCTGGTTTTAATTAATTCTGCTTTTGATCCTTCCTAATAAGGTATTTTTTGAAACTAGTATTATCTTGAATCCACCTAAATCCTTTTGGGTTGTAAGAATTGTTTATGTTTTAGATGTTTAATGAGTTCCCGTTGAACCACTCCACCTGCTCTACATGTATGGACTGGTTAAGTCTTATAAATTAGTTGTGAGCGGACATGGGTAAAGGAAGGATGTTATATTTATTAGAACTCTTGCTTGAATCATTTGAAGGTCCCCCAAATAGAGTCATCACCGTGACTTCTTCTTTTTCCTTCACATCTTTGCAGGCTGCAAACTATCTCAACATCAAAAGCTTGCTAGATTTGACATGTCAGACAGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAACGACTTTACGCCCGAGGAAGAGGAGGAGGTTCGTAGGGAGAACCAGTGGGCCTTTGAATAG ATGTCTGATAAGAACAACAACAACGAAGATGCATTAGGGTGGGGAATGAGTTTAAGCGGAATTGTTGGCGGCCCACAAGAAAGTGATCAGTTTAAGGCTGAATCTTATGTGACACTGAATATGAACAAGCGATTCAAGTTAAAGCCAGGGATTGCATATGTGACAGACGGCAATGCCAAGGCGATGGCTTTCCTTGTATTGAATTTGGCTGCATTTGTTGTTCCCAATTATGATTACTCTCTTCGTTTCGCAACGCAGCGCCTCGGTCTGGGTTTGAGACCTCATCGAATCTTCCAGAAAGCGAAATACGGCACCATGTCTGCAGGCAGGAAGATCACGTTGAAGAGTTCTGATGGCGAGATCTTTGAGGTCGACGAAGCTGTGGCCTTGGAGTCACAGACGATCAAGCACATGATTGAAGACGATTGCGCCGATAGTGGAATCCCTCTCCCTAACGTCAACAGCAAGATCTTGTCTAAGGTTATCGAGTACTGCAAGAAGCATGTCGAGTCCCCCAAGCCGGAGGATCGTACTGGCTCCGTCGACGATGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAAGCCACCCTGTTCGATCTCATTCTGGCTGCAAACTATCTCAACATCAAAAGCTTGCTAGATTTGACATGTCAGACAGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAACGACTTTACGCCCGAGGAAGAGGAGGAGGTTCGTAGGGAGAACCAGTGGGCCTTTGAATAG ATGTCTGATAAGAACAACAACAACGAAGATGCATTAGGGTGGGGAATGAGTTTAAGCGGAATTGTTGGCGGCCCACAAGAAAGTGATCAGTTTAAGGCTGAATCTTATGTGACACTGAATATGAACAAGCGATTCAAGTTAAAGCCAGGGATTGCATATGTGACAGACGGCAATGCCAAGGCGATGGCTTTCCTTGTATTGAATTTGGCTGCATTTGTTGTTCCCAATTATGATTACTCTCTTCGTTTCGCAACGCAGCGCCTCGGTCTGGGTTTGAGACCTCATCGAATCTTCCAGAAAGCGAAATACGGCACCATGTCTGCAGGCAGGAAGATCACGTTGAAGAGTTCTGATGGCGAGATCTTTGAGGTCGACGAAGCTGTGGCCTTGGAGTCACAGACGATCAAGCACATGATTGAAGACGATTGCGCCGATAGTGGAATCCCTCTCCCTAACGTCAACAGCAAGATCTTGTCTAAGGTTATCGAGTACTGCAAGAAGCATGTCGAGTCCCCCAAGCCGGAGGATCGTACTGGCTCCGTCGACGATGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAAGCCACCCTGTTCGATCTCATTCTGGCTGCAAACTATCTCAACATCAAAAGCTTGCTAGATTTGACATGTCAGACAGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAACGACTTTACGCCCGAGGAAGAGGAGGAGGTTCGTAGGGAGAACCAGTGGGCCTTTGAATAG MSDKNNNNEDALGWGMSLSGIVGGPQESDQFKAESYVTLNMNKRFKLKPGIAYVTDGNAKAMAFLVLNLAAFVVPNYDYSLRFATQRLGLGLRPHRIFQKAKYGTMSAGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE Homology
BLAST of Csor.00g300170.m01 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 6.9e-70 Identity = 137/171 (80.12%), Postives = 145/171 (84.80%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 1.5e-64 Identity = 125/159 (78.62%), Postives = 141/159 (88.68%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 1.9e-64 Identity = 129/166 (77.71%), Postives = 139/166 (83.73%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 2.4e-62 Identity = 123/165 (74.55%), Postives = 140/165 (84.85%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1) HSP 1 Score: 220.7 bits (561), Expect = 1.9e-56 Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. NCBI nr
Match: KAG6598516.1 (SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 518 bits (1335), Expect = 2.38e-185 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. NCBI nr
Match: KAG7029453.1 (SKP1-like protein 1B [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 514 bits (1325), Expect = 1.38e-178 Identity = 261/262 (99.62%), Postives = 261/262 (99.62%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. NCBI nr
Match: KAG6585523.1 (SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 379 bits (972), Expect = 1.96e-125 Identity = 201/262 (76.72%), Postives = 215/262 (82.06%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. NCBI nr
Match: KAG7020437.1 (SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 316 bits (810), Expect = 2.52e-106 Identity = 161/185 (87.03%), Postives = 169/185 (91.35%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. NCBI nr
Match: XP_004143010.1 (SKP1-like protein 1B [Cucumis sativus] >XP_022962289.1 SKP1-like protein 1B [Cucurbita moschata] >XP_022996879.1 SKP1-like protein 1B [Cucurbita maxima] >XP_023546968.1 SKP1-like protein 1B [Cucurbita pepo subsp. pepo] >XP_038886225.1 SKP1-like protein 1B [Benincasa hispida] >KGN62264.1 hypothetical protein Csa_018747 [Cucumis sativus]) HSP 1 Score: 309 bits (791), Expect = 4.26e-104 Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. ExPASy TrEMBL
Match: A0A6J1K9X2 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111491993 PE=3 SV=1) HSP 1 Score: 309 bits (791), Expect = 2.06e-104 Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. ExPASy TrEMBL
Match: A0A0A0LMK0 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G346050 PE=3 SV=1) HSP 1 Score: 309 bits (791), Expect = 2.06e-104 Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. ExPASy TrEMBL
Match: A0A6J1HGN0 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111462785 PE=3 SV=1) HSP 1 Score: 309 bits (791), Expect = 2.06e-104 Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. ExPASy TrEMBL
Match: A0A5A7VEU3 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001580 PE=3 SV=1) HSP 1 Score: 306 bits (785), Expect = 1.69e-103 Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. ExPASy TrEMBL
Match: A0A1S3BCE2 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103488389 PE=3 SV=1) HSP 1 Score: 306 bits (785), Expect = 1.69e-103 Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein ) HSP 1 Score: 265.4 bits (677), Expect = 4.9e-71 Identity = 137/171 (80.12%), Postives = 145/171 (84.80%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 ) HSP 1 Score: 247.7 bits (631), Expect = 1.1e-65 Identity = 125/159 (78.62%), Postives = 141/159 (88.68%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 ) HSP 1 Score: 220.7 bits (561), Expect = 1.4e-57 Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 ) HSP 1 Score: 213.0 bits (541), Expect = 2.9e-55 Identity = 108/158 (68.35%), Postives = 129/158 (81.65%), Query Frame = 0
BLAST of Csor.00g300170.m01 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 ) HSP 1 Score: 213.0 bits (541), Expect = 2.9e-55 Identity = 108/156 (69.23%), Postives = 127/156 (81.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|