Csor.00g255870.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g255870.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Csor_Chr03: 726186 .. 726611 (-)
Sequence length	330
RNA-Seq Expression	Csor.00g255870.m01
Synteny	Csor.00g255870.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGTCTTTGAAATGACCAATTATGGGGTTATTAAGGGGGTAAGAACAGCAATTAGAGGTAAGGGAGTATGCACGGGACTCGTGGTTTCTATTGCAAGTCTAATGATTAAATCGTATACCTCTGGAACTAAAGGGATCAATCTGATATTATAAGGAATGCAATGGCTCCAAACACTAGGATTGCCTAAGGTTGACAACAAGGGCCTGGCATTAGCCATCAGAATTGGGGATTCAAGGATCCTGATCGAGGATGACCCTTCTCTTACCCAAAAAGAAGCTTTGATAGAGAGTCTCAAACGGTCATGGAAACAGCGTGGCCCTTCCACGTGGAGCTCTAAGAAGATAATAGAACAAGTTGAAGATTTTAATTTCCTAAACGCAATCCCCCCTTCAAATCTTCCTAGTGAAGTGGACAAGCTCTAG

mRNA sequence

ATGCTCGTCTTTGAAATGACCAATTATGGGGTTATTAAGGGGGTAAGAACAGCAATTAGAGGAATGCAATGGCTCCAAACACTAGGATTGCCTAAGGTTGACAACAAGGGCCTGGCATTAGCCATCAGAATTGGGGATTCAAGGATCCTGATCGAGGATGACCCTTCTCTTACCCAAAAAGAAGCTTTGATAGAGAGTCTCAAACGGTCATGGAAACAGCGTGGCCCTTCCACGTGGAGCTCTAAGAAGATAATAGAACAAGTTGAAGATTTTAATTTCCTAAACGCAATCCCCCCTTCAAATCTTCCTAGTGAAGTGGACAAGCTCTAG

Coding sequence (CDS)

ATGCTCGTCTTTGAAATGACCAATTATGGGGTTATTAAGGGGGTAAGAACAGCAATTAGAGGAATGCAATGGCTCCAAACACTAGGATTGCCTAAGGTTGACAACAAGGGCCTGGCATTAGCCATCAGAATTGGGGATTCAAGGATCCTGATCGAGGATGACCCTTCTCTTACCCAAAAAGAAGCTTTGATAGAGAGTCTCAAACGGTCATGGAAACAGCGTGGCCCTTCCACGTGGAGCTCTAAGAAGATAATAGAACAAGTTGAAGATTTTAATTTCCTAAACGCAATCCCCCCTTCAAATCTTCCTAGTGAAGTGGACAAGCTCTAG

Protein sequence

MLVFEMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQKEALIESLKRSWKQRGPSTWSSKKIIEQVEDFNFLNAIPPSNLPSEVDKL

Homology

[Close]

BLAST of Csor.00g255870.m01 vs. NCBI nr
Match: KAG6603215.1 (hypothetical protein SDJN03_03824, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218 bits (556), Expect = 1.32e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MLVFEMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQK 60
           MLVFEMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQK
Sbjct: 1   MLVFEMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQK 60

Query: 61  EALIESLKRSWKQRGPSTWSSKKIIEQVEDFNFLNAIPPSNLPSEVDKL 109
           EALIESLKRSWKQRGPSTWSSKKIIEQVEDFNFLNAIPPSNLPSEVDKL
Sbjct: 61  EALIESLKRSWKQRGPSTWSSKKIIEQVEDFNFLNAIPPSNLPSEVDKL 109

[Close]

BLAST of Csor.00g255870.m01 vs. NCBI nr
Match: KAA0064684.1 (tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.05e-08
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 5   EMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQKEALI 64
           E T+YGVI G   A++GMQWL +LG+  VD K L L   +    I I+ DPSLT+    +
Sbjct: 311 ETTHYGVILGSGAAVQGMQWLHSLGVTMVDRKNLLLTFSVEGKTIKIQGDPSLTKARVSL 370

Query: 65  ESLKRSW 71
           +++ ++W
Sbjct: 371 KNMIKAW 377

[Close]

BLAST of Csor.00g255870.m01 vs. NCBI nr
Match: KAA0037057.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06592.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.68e-07
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 5   EMTNYGVIKGVRTA------IRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLT 64
           E  NYGVI G RTA      I GMQWL +LG+ +VD K L L       +++I+ DPSLT
Sbjct: 92  ETPNYGVILGSRTALGGVDMILGMQWLHSLGVTEVDWKKLMLTFHHQGRKVVIKGDPSLT 151

Query: 65  QKEALIESLKRSW 71
           +    +++L +SW
Sbjct: 152 KTRVSLKNLMKSW 164

[Close]

BLAST of Csor.00g255870.m01 vs. NCBI nr
Match: KAA0053433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.72e-06
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5   EMTNYGVIKGVRTAIRG--------MQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPS 64
           E  +YGVI G RTAI+G        MQWL +LG+  VD K L L       +I I+ DPS
Sbjct: 360 ETAHYGVILGSRTAIQGKGVDVVLGMQWLHSLGVTVVDWKNLTLTFSSEGKQISIKGDPS 419

Query: 65  LTQKEALIESLKRSW 71
           LT+    ++S+ ++W
Sbjct: 420 LTKSRISLKSMFKTW 434

[Close]

BLAST of Csor.00g255870.m01 vs. NCBI nr
Match: TYK14861.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.85e-06
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5   EMTNYGVIKGVRTAIRG--------MQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPS 64
           E  +YGVI G RTAI+G        MQWL +LG+  VD K L L       +I I+ DPS
Sbjct: 385 ETAHYGVILGSRTAIQGKGVDVVLGMQWLHSLGVTVVDWKNLTLTFSSEGKQISIKGDPS 444

Query: 65  LTQKEALIESLKRSW 71
           LT+    ++S+ ++W
Sbjct: 445 LTKSRISLKSMFKTW 459

[Close]

BLAST of Csor.00g255870.m01 vs. ExPASy TrEMBL
Match: A0A5A7VBR1 (Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00180 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.94e-09
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 5   EMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQKEALI 64
           E T+YGVI G   A++GMQWL +LG+  VD K L L   +    I I+ DPSLT+    +
Sbjct: 311 ETTHYGVILGSGAAVQGMQWLHSLGVTMVDRKNLLLTFSVEGKTIKIQGDPSLTKARVSL 370

Query: 65  ESLKRSW 71
           +++ ++W
Sbjct: 371 KNMIKAW 377

[Close]

BLAST of Csor.00g255870.m01 vs. ExPASy TrEMBL
Match: A0A5A7T671 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00600 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.14e-08
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 5   EMTNYGVIKGVRTA------IRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLT 64
           E  NYGVI G RTA      I GMQWL +LG+ +VD K L L       +++I+ DPSLT
Sbjct: 92  ETPNYGVILGSRTALGGVDMILGMQWLHSLGVTEVDWKKLMLTFHHQGRKVVIKGDPSLT 151

Query: 65  QKEALIESLKRSW 71
           +    +++L +SW
Sbjct: 152 KTRVSLKNLMKSW 164

[Close]

BLAST of Csor.00g255870.m01 vs. ExPASy TrEMBL
Match: A0A5A7UC17 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001040 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.32e-06
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5   EMTNYGVIKGVRTAIRG--------MQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPS 64
           E  +YGVI G RTAI+G        MQWL +LG+  VD K L L       +I I+ DPS
Sbjct: 360 ETAHYGVILGSRTAIQGKGVDVVLGMQWLHSLGVTVVDWKNLTLTFSSEGKQISIKGDPS 419

Query: 65  LTQKEALIESLKRSW 71
           LT+    ++S+ ++W
Sbjct: 420 LTKSRISLKSMFKTW 434

[Close]

BLAST of Csor.00g255870.m01 vs. ExPASy TrEMBL
Match: A0A5D3CSQ2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00320 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.38e-06
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5   EMTNYGVIKGVRTAIRG--------MQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPS 64
           E  +YGVI G RTAI+G        MQWL +LG+  VD K L L       +I I+ DPS
Sbjct: 385 ETAHYGVILGSRTAIQGKGVDVVLGMQWLHSLGVTVVDWKNLTLTFSSEGKQISIKGDPS 444

Query: 65  LTQKEALIESLKRSW 71
           LT+    ++S+ ++W
Sbjct: 445 LTKSRISLKSMFKTW 459

[Close]

BLAST of Csor.00g255870.m01 vs. ExPASy TrEMBL
Match: A0A5A7TAV1 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00200 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.66e-06
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 5   EMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQKEALI 64
           E  +YGVI G   A++GMQWL +LG+  VD K L L   +    I  + DPSLT+    +
Sbjct: 441 ETAHYGVILGSGPAVQGMQWLHSLGVTTVDWKNLLLTSSVEGKPIKNQGDPSLTKARVSL 500

Query: 65  ESLKRSW 71
           +++ ++W
Sbjct: 501 KNMIKAW 507

The following BLAST results are available for this feature:

BLAST of Csor.00g255870.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g255870.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603215.1	1.32e-71	100.00	hypothetical protein SDJN03_03824, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0064684.1	2.05e-08	41.79	tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tet...	[more]
KAA0037057.1	1.68e-07	43.84	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06592.1 Ty3/gyp...	[more]
KAA0053433.1	2.72e-06	41.33	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14861.1	2.85e-06	41.33	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Csor.00g255870.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBR1	9.94e-09	41.79	Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7T671	8.14e-08	43.84	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UC17	1.32e-06	41.33	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CSQ2	1.38e-06	41.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TAV1	4.66e-06	38.81	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Csor.00g255870.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g255870	Csor.00g255870	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g255870.m01.CDS01	Csor.00g255870.m01.CDS01	CDS
Csor.00g255870.m01.CDS02	Csor.00g255870.m01.CDS02	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g255870.m01.stop_codon01	Csor.00g255870.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g255870.m01.terminal01	Csor.00g255870.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g255870.m01.intron01	Csor.00g255870.m01.intron01	intron

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g255870.m01.initial01	Csor.00g255870.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g255870.m01.start_codon01	Csor.00g255870.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g255870.m01	Csor.00g255870.m01-protein	polypeptide