Csor.00g255870 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g255870
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTy3/gypsy retrotransposon protein
LocationCsor_Chr03: 726186 .. 726611 (-)
RNA-Seq ExpressionCsor.00g255870
SyntenyCsor.00g255870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGTCTTTGAAATGACCAATTATGGGGTTATTAAGGGGGTAAGAACAGCAATTAGAGGTAAGGGAGTATGCACGGGACTCGTGGTTTCTATTGCAAGTCTAATGATTAAATCGTATACCTCTGGAACTAAAGGGATCAATCTGATATTATAAGGAATGCAATGGCTCCAAACACTAGGATTGCCTAAGGTTGACAACAAGGGCCTGGCATTAGCCATCAGAATTGGGGATTCAAGGATCCTGATCGAGGATGACCCTTCTCTTACCCAAAAAGAAGCTTTGATAGAGAGTCTCAAACGGTCATGGAAACAGCGTGGCCCTTCCACGTGGAGCTCTAAGAAGATAATAGAACAAGTTGAAGATTTTAATTTCCTAAACGCAATCCCCCCTTCAAATCTTCCTAGTGAAGTGGACAAGCTCTAG

mRNA sequence

ATGCTCGTCTTTGAAATGACCAATTATGGGGTTATTAAGGGGGTAAGAACAGCAATTAGAGGAATGCAATGGCTCCAAACACTAGGATTGCCTAAGGTTGACAACAAGGGCCTGGCATTAGCCATCAGAATTGGGGATTCAAGGATCCTGATCGAGGATGACCCTTCTCTTACCCAAAAAGAAGCTTTGATAGAGAGTCTCAAACGGTCATGGAAACAGCGTGGCCCTTCCACGTGGAGCTCTAAGAAGATAATAGAACAAGTTGAAGATTTTAATTTCCTAAACGCAATCCCCCCTTCAAATCTTCCTAGTGAAGTGGACAAGCTCTAG

Coding sequence (CDS)

ATGCTCGTCTTTGAAATGACCAATTATGGGGTTATTAAGGGGGTAAGAACAGCAATTAGAGGAATGCAATGGCTCCAAACACTAGGATTGCCTAAGGTTGACAACAAGGGCCTGGCATTAGCCATCAGAATTGGGGATTCAAGGATCCTGATCGAGGATGACCCTTCTCTTACCCAAAAAGAAGCTTTGATAGAGAGTCTCAAACGGTCATGGAAACAGCGTGGCCCTTCCACGTGGAGCTCTAAGAAGATAATAGAACAAGTTGAAGATTTTAATTTCCTAAACGCAATCCCCCCTTCAAATCTTCCTAGTGAAGTGGACAAGCTCTAG

Protein sequence

MLVFEMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQKEALIESLKRSWKQRGPSTWSSKKIIEQVEDFNFLNAIPPSNLPSEVDKL
Homology
BLAST of Csor.00g255870 vs. NCBI nr
Match: KAG6603215.1 (hypothetical protein SDJN03_03824, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218 bits (556), Expect = 1.32e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MLVFEMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQK 60
           MLVFEMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQK
Sbjct: 1   MLVFEMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQK 60

Query: 61  EALIESLKRSWKQRGPSTWSSKKIIEQVEDFNFLNAIPPSNLPSEVDKL 109
           EALIESLKRSWKQRGPSTWSSKKIIEQVEDFNFLNAIPPSNLPSEVDKL
Sbjct: 61  EALIESLKRSWKQRGPSTWSSKKIIEQVEDFNFLNAIPPSNLPSEVDKL 109

BLAST of Csor.00g255870 vs. NCBI nr
Match: KAA0064684.1 (tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.05e-08
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 5   EMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQKEALI 64
           E T+YGVI G   A++GMQWL +LG+  VD K L L   +    I I+ DPSLT+    +
Sbjct: 311 ETTHYGVILGSGAAVQGMQWLHSLGVTMVDRKNLLLTFSVEGKTIKIQGDPSLTKARVSL 370

Query: 65  ESLKRSW 71
           +++ ++W
Sbjct: 371 KNMIKAW 377

BLAST of Csor.00g255870 vs. NCBI nr
Match: KAA0037057.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06592.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.68e-07
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 5   EMTNYGVIKGVRTA------IRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLT 64
           E  NYGVI G RTA      I GMQWL +LG+ +VD K L L       +++I+ DPSLT
Sbjct: 92  ETPNYGVILGSRTALGGVDMILGMQWLHSLGVTEVDWKKLMLTFHHQGRKVVIKGDPSLT 151

Query: 65  QKEALIESLKRSW 71
           +    +++L +SW
Sbjct: 152 KTRVSLKNLMKSW 164

BLAST of Csor.00g255870 vs. NCBI nr
Match: KAA0053433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.72e-06
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 5   EMTNYGVIKGVRTAIRG--------MQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPS 64
           E  +YGVI G RTAI+G        MQWL +LG+  VD K L L       +I I+ DPS
Sbjct: 360 ETAHYGVILGSRTAIQGKGVDVVLGMQWLHSLGVTVVDWKNLTLTFSSEGKQISIKGDPS 419

Query: 65  LTQKEALIESLKRSW 71
           LT+    ++S+ ++W
Sbjct: 420 LTKSRISLKSMFKTW 434

BLAST of Csor.00g255870 vs. NCBI nr
Match: TYK14861.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.85e-06
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 5   EMTNYGVIKGVRTAIRG--------MQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPS 64
           E  +YGVI G RTAI+G        MQWL +LG+  VD K L L       +I I+ DPS
Sbjct: 385 ETAHYGVILGSRTAIQGKGVDVVLGMQWLHSLGVTVVDWKNLTLTFSSEGKQISIKGDPS 444

Query: 65  LTQKEALIESLKRSW 71
           LT+    ++S+ ++W
Sbjct: 445 LTKSRISLKSMFKTW 459

BLAST of Csor.00g255870 vs. ExPASy TrEMBL
Match: A0A5A7VBR1 (Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00180 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.94e-09
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 5   EMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQKEALI 64
           E T+YGVI G   A++GMQWL +LG+  VD K L L   +    I I+ DPSLT+    +
Sbjct: 311 ETTHYGVILGSGAAVQGMQWLHSLGVTMVDRKNLLLTFSVEGKTIKIQGDPSLTKARVSL 370

Query: 65  ESLKRSW 71
           +++ ++W
Sbjct: 371 KNMIKAW 377

BLAST of Csor.00g255870 vs. ExPASy TrEMBL
Match: A0A5A7T671 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00600 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.14e-08
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 5   EMTNYGVIKGVRTA------IRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLT 64
           E  NYGVI G RTA      I GMQWL +LG+ +VD K L L       +++I+ DPSLT
Sbjct: 92  ETPNYGVILGSRTALGGVDMILGMQWLHSLGVTEVDWKKLMLTFHHQGRKVVIKGDPSLT 151

Query: 65  QKEALIESLKRSW 71
           +    +++L +SW
Sbjct: 152 KTRVSLKNLMKSW 164

BLAST of Csor.00g255870 vs. ExPASy TrEMBL
Match: A0A5A7UC17 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001040 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.32e-06
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 5   EMTNYGVIKGVRTAIRG--------MQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPS 64
           E  +YGVI G RTAI+G        MQWL +LG+  VD K L L       +I I+ DPS
Sbjct: 360 ETAHYGVILGSRTAIQGKGVDVVLGMQWLHSLGVTVVDWKNLTLTFSSEGKQISIKGDPS 419

Query: 65  LTQKEALIESLKRSW 71
           LT+    ++S+ ++W
Sbjct: 420 LTKSRISLKSMFKTW 434

BLAST of Csor.00g255870 vs. ExPASy TrEMBL
Match: A0A5D3CSQ2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00320 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.38e-06
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 5   EMTNYGVIKGVRTAIRG--------MQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPS 64
           E  +YGVI G RTAI+G        MQWL +LG+  VD K L L       +I I+ DPS
Sbjct: 385 ETAHYGVILGSRTAIQGKGVDVVLGMQWLHSLGVTVVDWKNLTLTFSSEGKQISIKGDPS 444

Query: 65  LTQKEALIESLKRSW 71
           LT+    ++S+ ++W
Sbjct: 445 LTKSRISLKSMFKTW 459

BLAST of Csor.00g255870 vs. ExPASy TrEMBL
Match: A0A5A7TAV1 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00200 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.66e-06
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 0

Query: 5   EMTNYGVIKGVRTAIRGMQWLQTLGLPKVDNKGLALAIRIGDSRILIEDDPSLTQKEALI 64
           E  +YGVI G   A++GMQWL +LG+  VD K L L   +    I  + DPSLT+    +
Sbjct: 441 ETAHYGVILGSGPAVQGMQWLHSLGVTTVDWKNLLLTSSVEGKPIKNQGDPSLTKARVSL 500

Query: 65  ESLKRSW 71
           +++ ++W
Sbjct: 501 KNMIKAW 507

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6603215.11.32e-71100.00hypothetical protein SDJN03_03824, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0064684.12.05e-0841.79tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tet... [more]
KAA0037057.11.68e-0743.84Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06592.1 Ty3/gyp... [more]
KAA0053433.12.72e-0641.33ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK14861.12.85e-0641.33Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7VBR19.94e-0941.79Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7T6718.14e-0843.84Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UC171.32e-0641.33Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CSQ21.38e-0641.33Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TAV14.66e-0638.81Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g255870.m01Csor.00g255870.m01mRNA