Csor.00g246930.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g246930.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-CH-type domain-containing protein
Location	Csor_Chr06: 1331126 .. 1332578 (+)
Sequence length	702
RNA-Seq Expression	Csor.00g246930.m01
Synteny	Csor.00g246930.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTCCACAAGTTTCCCAGTCCGACATTGATTTGGAGCAAGGGGATCATCGGCGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTTTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCCCAGTTTTATTCCACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGGGGTTGGGGTGGTTGTTTCGGATTCCCGGCGGCTTTCATCGGCTTCGGATCGTTCCGTCGAGGTTGAAAATGAGAATGGGATTACTGAAATTAAGGTGCATTTAGGTAAGGTTGAGAGGGATTGCAGGATTTGTCATCTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATCTGGCTGCGGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGCAATAAGTGAGTTACATCCCTGTTTTTATAAGCAAGTTTTCATGTTTTTTGTCCAGGAATTCTGATCATTCTTCACTCATGCTATGTCATGTCATGCTTCATAGTTCTTTGAGTTCATGTTTTCAGATTATGTTCTTGCTGCTGTTCTTGTGATAAGCATCTTCTGTGATATTCTGGTGAATTTGTTACTTAAACCTTACCATTTTGATGCTTACTTAGAGGGAAAGCTTAGAGACACAAAAGGAAATAAGAGTAAAACATAAGAAAGACGTTTATTTTATCTCCAAGCAAGTTACACTGATTATTCCTTCTTCCTTCTCGCTTTTCTGATGCCTTATGAATCTCTGTGAGCTCTTTCAGATCCTTACTCTCATGAGCTAATATCAAAAGATATGCATTTAGGGAGAGAGGAATAAGTGTCAGCGAGGACACCGAATCTCGAAAGAGGGTGGATTGTGAGATCCCACATAAGGGCCTAGCAAACACGTTTTTAAAACCTCGAGGGAAAGTTCAAAGAGGAGAATATCTATTAGTGGTGAGTTTGGGTTCTTACACAAGATGAACATAAACAACGATGGTTGAAGGTGAATTGGGGGACTTGATGGTTTGGCATTTGCTGTCTTCATGATAGGTTTACACCTTGTGATTGTTGTGTGATCGATCTTTACTTTCTGTTTGATGCTCGAAAATGGACCGAGGCATTTGCATTGTTCTTTTGGCTACTTTGTTTATTCATAATCTTCTTAAATCTTATTAGGACGTGTGAGATTTGTCATTCCGTTGCACGAAACATTCTGGGACCAAATGAAGTTGAGTCAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCAACAACTGCAGTTGCTGCTGCATCAATTCCCTCATCAGATAGCCCAAGCTTCTGGCGTGGCCATCGGTTTCTGAACTTTCTACTTGCTTGTATGGTTTTTGCATTTGTTATATCTTGGCTCTTTCACTTCAACGTGCCCTCATAA

mRNA sequence

ATGGCGCCTCCACAAGTTTCCCAGTCCGACATTGATTTGGAGCAAGGGGATCATCGGCGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTTTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCCCAGTTTTATTCCACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGGGGTTGGGGTGGTTGTTTCGGATTCCCGGCGGCTTTCATCGGCTTCGGATCGTTCCGTCGAGGTTGAAAATGAGAATGGGATTACTGAAATTAAGGTGCATTTAGGTAAGGTTGAGAGGGATTGCAGGATTTGTCATCTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATCTGGCTGCGGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGCAATAAGACGTGTGAGATTTGTCATTCCGTTGCACGAAACATTCTGGGACCAAATGAAGTTGAGTCAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCAACAACTGCAGTTGCTGCTGCATCAATTCCCTCATCAGATAGCCCAAGCTTCTGGCGTGGCCATCGGTTTCTGAACTTTCTACTTGCTTGTATGGTTTTTGCATTTGTTATATCTTGGCTCTTTCACTTCAACGTGCCCTCATAA

Coding sequence (CDS)

ATGGCGCCTCCACAAGTTTCCCAGTCCGACATTGATTTGGAGCAAGGGGATCATCGGCGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTTTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCCCAGTTTTATTCCACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGGGGTTGGGGTGGTTGTTTCGGATTCCCGGCGGCTTTCATCGGCTTCGGATCGTTCCGTCGAGGTTGAAAATGAGAATGGGATTACTGAAATTAAGGTGCATTTAGGTAAGGTTGAGAGGGATTGCAGGATTTGTCATCTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCTTGCAAGGATGATCTGGCTGCGGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATCAAAGGCAATAAGACGTGTGAGATTTGTCATTCCGTTGCACGAAACATTCTGGGACCAAATGAAGTTGAGTCAACAGAGCAGTCTAATGAATCCAACAACGCCTCCTCAACAACTGCAGTTGCTGCTGCATCAATTCCCTCATCAGATAGCCCAAGCTTCTGGCGTGGCCATCGGTTTCTGAACTTTCTACTTGCTTGTATGGTTTTTGCATTTGTTATATCTTGGCTCTTTCACTTCAACGTGCCCTCATAA

Protein sequence

MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS

Homology

[Close]

BLAST of Csor.00g246930.m01 vs. NCBI nr
Match: KAG6596373.1 (hypothetical protein SDJN03_09553, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027922.1 hypothetical protein SDJN02_09101 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 468 bits (1205), Expect = 1.67e-166
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF
Sbjct: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ
Sbjct: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233

[Close]

BLAST of Csor.00g246930.m01 vs. NCBI nr
Match: XP_023538705.1 (uncharacterized protein LOC111799566 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 462 bits (1189), Expect = 4.44e-164
Identity = 232/233 (99.57%), Postives = 232/233 (99.57%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF
Sbjct: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ
Sbjct: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASSTTAVAA SIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTTAVAA-SIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 232

[Close]

BLAST of Csor.00g246930.m01 vs. NCBI nr
Match: XP_022941830.1 (uncharacterized protein LOC111447072 [Cucurbita moschata])

HSP 1 Score: 461 bits (1186), Expect = 1.27e-163
Identity = 231/233 (99.14%), Postives = 232/233 (99.57%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF
Sbjct: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ
Sbjct: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASSTTAVAA SIPSSD+PSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTTAVAA-SIPSSDTPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 232

[Close]

BLAST of Csor.00g246930.m01 vs. NCBI nr
Match: XP_022971335.1 (uncharacterized protein LOC111470088 [Cucurbita maxima])

HSP 1 Score: 457 bits (1177), Expect = 3.00e-162
Identity = 230/233 (98.71%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           MAPP+VSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF
Sbjct: 1   MAPPEVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFVSQPGVGVVVSDSRRLSSASDRSVEVENE GITEIKVHLGKVERDCRICHLGLESNSQ
Sbjct: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENEIGITEIKVHLGKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASSTTAVAA SIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTTAVAA-SIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 232

[Close]

BLAST of Csor.00g246930.m01 vs. NCBI nr
Match: XP_038904640.1 (uncharacterized protein LOC120090971 [Benincasa hispida])

HSP 1 Score: 428 bits (1100), Expect = 1.59e-150
Identity = 216/233 (92.70%), Postives = 222/233 (95.28%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           M P +VSQSDIDLEQG+HRRSVSGS+LSADCSVYFSDADEGSCYSQF+STNGGSYDEYRF
Sbjct: 1   MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFVSQP VGVV SDSRR+SS SDRSVEVENENGITEIKVH  KVERDCRICHLGLESNSQ
Sbjct: 61  AFVSQPEVGVV-SDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHS+ARNILGPNEVE TEQSNE
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASSTT VAA SIPSSDS SFWRGHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTTTVAA-SIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Csor.00g246930.m01 vs. ExPASy TrEMBL
Match: A0A6J1FUW7 (uncharacterized protein LOC111447072 OS=Cucurbita moschata OX=3662 GN=LOC111447072 PE=4 SV=1)

HSP 1 Score: 461 bits (1186), Expect = 6.17e-164
Identity = 231/233 (99.14%), Postives = 232/233 (99.57%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF
Sbjct: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ
Sbjct: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASSTTAVAA SIPSSD+PSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTTAVAA-SIPSSDTPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 232

[Close]

BLAST of Csor.00g246930.m01 vs. ExPASy TrEMBL
Match: A0A6J1I5G1 (uncharacterized protein LOC111470088 OS=Cucurbita maxima OX=3661 GN=LOC111470088 PE=4 SV=1)

HSP 1 Score: 457 bits (1177), Expect = 1.45e-162
Identity = 230/233 (98.71%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           MAPP+VSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF
Sbjct: 1   MAPPEVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFVSQPGVGVVVSDSRRLSSASDRSVEVENE GITEIKVHLGKVERDCRICHLGLESNSQ
Sbjct: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENEIGITEIKVHLGKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASSTTAVAA SIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTTAVAA-SIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 232

[Close]

BLAST of Csor.00g246930.m01 vs. ExPASy TrEMBL
Match: A0A1S3B5A7 (uncharacterized protein LOC103486339 OS=Cucumis melo OX=3656 GN=LOC103486339 PE=4 SV=1)

HSP 1 Score: 426 bits (1094), Expect = 6.31e-150
Identity = 215/233 (92.27%), Postives = 221/233 (94.85%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           M P +VSQSDIDLEQG+HRRSVSGS+LSADCSVYFSDADEGSCYSQF+STNGGSYDEYRF
Sbjct: 1   MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFVSQP VGVV  DSRR+SS SDRSVEVENENGITEIKVH  KVERDCRICHLGLESNSQ
Sbjct: 61  AFVSQPEVGVV-PDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHS+ARNILGPNEVE TEQSNE
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASSTT VAA SIPSSDS SFWRGHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTTTVAA-SIPSSDSHSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Csor.00g246930.m01 vs. ExPASy TrEMBL
Match: A0A0A0LAC9 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G733180 PE=4 SV=1)

HSP 1 Score: 425 bits (1092), Expect = 1.27e-149
Identity = 215/233 (92.27%), Postives = 221/233 (94.85%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           M P +VSQSDIDLEQG+HRRSVSGS+LSADCSVYFSDADEGSCYSQF+STNGGSYDEYRF
Sbjct: 1   MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFVSQP VGVV SDSRR+SS SDRSVEVENENGITEIKVH  KVERDCRICHLGLESNSQ
Sbjct: 61  AFVSQPEVGVV-SDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHS+ARNILGPNEVE TEQSNE
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTEQSNE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASSTT VAA SIPSSDS SFW GHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTTTVAA-SIPSSDSQSFWCGHRFLNFLLACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Csor.00g246930.m01 vs. ExPASy TrEMBL
Match: A0A6J1CWG7 (uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015024 PE=4 SV=1)

HSP 1 Score: 422 bits (1084), Expect = 2.11e-148
Identity = 212/233 (90.99%), Postives = 222/233 (95.28%), Query Frame = 0


Query: 1   MAPPQVSQSDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRF 60
           M  P+VSQSDIDLEQG+HRRSVSGS++SADCSVYFSDADEGSCYSQF+STNGGSYDEYRF
Sbjct: 1   MPTPEVSQSDIDLEQGNHRRSVSGSDVSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRF 60

Query: 61  AFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQ 120
           AFV+QP VGVV SDSRR+SS SDRSVEVENENGITEIKVHL KVERDCRICHLGLESNSQ
Sbjct: 61  AFVAQPEVGVV-SDSRRVSSVSDRSVEVENENGITEIKVHLAKVERDCRICHLGLESNSQ 120

Query: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNE 180
           ESGIPIELGCSCKDDLAAAHKHCAETWFKI+GNKTCEICHS+ARNILGP+EVE TEQS E
Sbjct: 121 ESGIPIELGCSCKDDLAAAHKHCAETWFKIRGNKTCEICHSIARNILGPHEVELTEQSTE 180

Query: 181 SNNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 233
           SNNASST AVAA SIPSSDS SFWRGHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 181 SNNASSTAAVAA-SIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 231

[Close]

BLAST of Csor.00g246930.m01 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-54
Identity = 103/163 (63.19%), Postives = 124/163 (76.07%), Query Frame = 0


Query: 71  VVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQESGIPIELGC 130
           +V D  R S+AS  SVE++ E G+ E  VHL + ERDCRICH+ L++ + ESG+PIELGC
Sbjct: 42  IVKDEERRSNASVCSVEIDLELGLPEKVVHLSQSERDCRICHMSLDAANLESGVPIELGC 101

Query: 131 SCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNNASSTTAV 190
           SCK DLAAAHKHCAETWFKIKGNK CE+C S+A N++G  EVES E  NE+N   + T +
Sbjct: 102 SCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNVVGSVEVESEESRNEANGVENLT-L 161

Query: 191 AAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 234
             +     +  SFW+GHRFLNFLLACMVFAFVISWLFHFNVPS
Sbjct: 162 RTSGPRLVEGRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 203

[Close]

BLAST of Csor.00g246930.m01 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-45
Identity = 115/232 (49.57%), Postives = 140/232 (60.34%), Query Frame = 0


Query: 9   SDIDLEQGD----HRRSVSGSELSADCSVYFSDA-DEGSCYSQFYSTNGGSYDEYRFAFV 68
           +DIDLEQG     HRRS+ GS    D SVY+SD  D  SCYS FYST GGSY EY     
Sbjct: 3   TDIDLEQGGAFGYHRRSLDGS----DVSVYYSDGEDVMSCYSYFYSTTGGSY-EYE---- 62

Query: 69  SQPGVGVVVSDSRRLSSA-SDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQES 128
                      SR++SS  S  S E+++++            E+DCRICHLG+E++    
Sbjct: 63  --------GDQSRKVSSVMSPSSSEIDDDDA-------TAPPEKDCRICHLGVETS---G 122

Query: 129 GIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNE-VESTEQSNES 188
           G  IELGCSCKDDLA AH+ CAETWFKIKG+KTCEIC SVARN+ G NE V ST +  E 
Sbjct: 123 GGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVARNVGGANEMVGSTMEEREL 182

Query: 189 NNASSTTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 234
            N   T A         ++   W+  R +N +LACMVF F ISW+FHF+V S
Sbjct: 183 RNGEETAAGEGGGATVVENR--WQPQRVVNLVLACMVFGFFISWIFHFHVSS 205

[Close]

BLAST of Csor.00g246930.m01 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-38
Identity = 101/228 (44.30%), Postives = 123/228 (53.95%), Query Frame = 0


Query: 9   SDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPGV 68
           S IDLE G   R    S++S +        D  SC             +Y + F S    
Sbjct: 7   SHIDLENGSGERQYRPSDVSGE--------DSSSC-------------DYDYDFHS---- 66

Query: 69  GVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQESGIPIEL 128
             V S       A D   E + E+ +    +  G  E+DCRICHLGLES+  E G P+ L
Sbjct: 67  -AVRSFCGEFEIADDLDDETDTES-VASGSIR-GSPEKDCRICHLGLESSRHECGDPMVL 126

Query: 129 GCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILG-PNEVEST--EQSNESNNAS 188
           GCSCKDDL   HK CA+TWFKIKGNKTCEIC S+A+N     NE+  T  E + +   A 
Sbjct: 127 GCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQNFFKVDNEIGQTTVETNVDDVEAG 186

Query: 189 STTAVAAASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 234
           +T  + A S   SD     RG+RFLNFLL CMV AFVISW FHFN+PS
Sbjct: 187 NTPTMVATS--DSDDRRLCRGNRFLNFLLTCMVCAFVISWFFHFNLPS 204

[Close]

BLAST of Csor.00g246930.m01 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-30
Identity = 84/220 (38.18%), Postives = 105/220 (47.73%), Query Frame = 0


Query: 44  YSQFYSTNGGSYDEYRFAFVSQPGVGVVVSDSRRLSSASDRSVEVENENGITEIKVHLGK 103
           YS   S +G S D    + V     GV   + +  S    R           + K    K
Sbjct: 21  YSVEISIDGDSSDWDSLSQVDLESGGVPAPEKQLHSGGKKRRTRRRKRRKKKKKK----K 80

Query: 104 VERDCRICHLGLESNSQES-------------------------------GIPIELGCSC 163
             RDCRICHL LE+N +                                 G+P++LGCSC
Sbjct: 81  GGRDCRICHLPLETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSC 140

Query: 164 KDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNNASS-TTAVA 223
           K DL  AH  CAETWFKIKGN TCEIC ++A N+ G       EQSN  + AS+ + A A
Sbjct: 141 KGDLGVAHSKCAETWFKIKGNMTCEICGAMALNVAG-------EQSNPESTASTHSQAAA 200

Query: 224 AASIPSSDSPSFWRGHRFLNFLLACMVFAFVISWLFHFNV 232
             S+  ++    W G   +NFLLA MVFAFV+SWLFHF V
Sbjct: 201 GQSLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229

[Close]

BLAST of Csor.00g246930.m01 vs. TAIR 10
Match: AT5G01070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-18
Identity = 59/146 (40.41%), Postives = 72/146 (49.32%), Query Frame = 0


Query: 9   SDIDLEQGDHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDEYRFAFVSQPGV 68
           S IDLE G   R    S++S +        D  SC             +Y + F S    
Sbjct: 7   SHIDLENGSGERQYRPSDVSGE--------DSSSC-------------DYDYDFHS---- 66

Query: 69  GVVVSDSRRLSSASDRSVEVENENGITEIKVHLGKVERDCRICHLGLESNSQESGIPIEL 128
             V S       A D   E + E+ +    +  G  E+DCRICHLGLES+  E G P+ L
Sbjct: 67  -AVRSFCGEFEIADDLDDETDTES-VASGSIR-GSPEKDCRICHLGLESSRHECGDPMVL 124

Query: 129 GCSCKDDLAAAHKHCAETWFKIKGNK 155
           GCSCKDDL   HK CA+TWFKIKGNK
Sbjct: 127 GCSCKDDLGYVHKQCADTWFKIKGNK 124

The following BLAST results are available for this feature:

BLAST of Csor.00g246930.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g246930.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596373.1	1.67e-166	100.00	hypothetical protein SDJN03_09553, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023538705.1	4.44e-164	99.57	uncharacterized protein LOC111799566 [Cucurbita pepo subsp. pepo]	[more]
XP_022941830.1	1.27e-163	99.14	uncharacterized protein LOC111447072 [Cucurbita moschata]	[more]
XP_022971335.1	3.00e-162	98.71	uncharacterized protein LOC111470088 [Cucurbita maxima]	[more]
XP_038904640.1	1.59e-150	92.70	uncharacterized protein LOC120090971 [Benincasa hispida]	[more]

BLAST of Csor.00g246930.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUW7	6.17e-164	99.14	uncharacterized protein LOC111447072 OS=Cucurbita moschata OX=3662 GN=LOC1114470...	[more]
A0A6J1I5G1	1.45e-162	98.71	uncharacterized protein LOC111470088 OS=Cucurbita maxima OX=3661 GN=LOC111470088...	[more]
A0A1S3B5A7	6.31e-150	92.27	uncharacterized protein LOC103486339 OS=Cucumis melo OX=3656 GN=LOC103486339 PE=...	[more]
A0A0A0LAC9	1.27e-149	92.27	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G73318...	[more]
A0A6J1CWG7	2.11e-148	90.99	uncharacterized protein LOC111015024 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Csor.00g246930.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	1.7e-54	63.19	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	1.8e-45	49.57	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	4.9e-38	44.30	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	6.4e-30	38.18	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.1	1.1e-18	40.41	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 107..160 e-value: 1.1E-17 score: 74.7
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 108..159 e-value: 1.4E-9 score: 38.0
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 100..166 score: 18.585831
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 97..168 e-value: 5.9E-15 score: 56.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 8..233
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 8..233
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 108..160 e-value: 2.67473E-12 score: 57.7224
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 105..163

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g246930	Csor.00g246930	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246930.m01.CDS02	Csor.00g246930.m01.CDS02	CDS
Csor.00g246930.m01.CDS01	Csor.00g246930.m01.CDS01	CDS

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246930.m01.initial01	Csor.00g246930.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246930.m01.start_codon01	Csor.00g246930.m01.start_codon01	start_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246930.m01.intron01	Csor.00g246930.m01.intron01	intron

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246930.m01.terminal01	Csor.00g246930.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246930.m01.stop_codon01	Csor.00g246930.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g246930.m01	Csor.00g246930.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding