Csor.00g243290.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g243290.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	glycine-rich protein 5-like
Location	Csor_Chr16: 2286365 .. 2286748 (-)
Sequence length	384
RNA-Seq Expression	Csor.00g243290.m01
Synteny	Csor.00g243290.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACTTACGCCATTGTTCTTATAACATGCGGGTGTGTGATAGCGAGTGCAGTGATTTTATGGTGTGTTTGTAGCTATGGAGGCCGTAAGAAGAAGAAAGCAGCGCCACCCACGTACACATCTAGTGCTCTTAGGCCAACGCCAAGGCCAAGCCGTGACCTTGAACTTGGGGAAGCTAAGAATGGTGGGATGACTATTCTTGCTGGGGCTGCTGCTGGCTTAGCTACTGCAGCTGTGGTTACCAGTTTAACCAATGATGGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAGGGGGAGGTGATGGTGGCGGTGGTGGTTGTGGAGGTGGATGTGGTGGGGGCTGTGGCGGTGGTTGTGGTGGTGGCTGTGGTGGTTGA

mRNA sequence

ATGAGAACTTACGCCATTGTTCTTATAACATGCGGGTGTGTGATAGCGAGTGCAGTGATTTTATGGTGTGTTTGTAGCTATGGAGGCCGTAAGAAGAAGAAAGCAGCGCCACCCACGTACACATCTAGTGCTCTTAGGCCAACGCCAAGGCCAAGCCGTGACCTTGAACTTGGGGAAGCTAAGAATGGTGGGATGACTATTCTTGCTGGGGCTGCTGCTGGCTTAGCTACTGCAGCTGTGGTTACCAGTTTAACCAATGATGGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAGGGGGAGGTGATGGTGGCGGTGGTGGTTGTGGAGGTGGATGTGGTGGGGGCTGTGGCGGTGGTTGTGGTGGTGGCTGTGGTGGTTGA

Coding sequence (CDS)

ATGAGAACTTACGCCATTGTTCTTATAACATGCGGGTGTGTGATAGCGAGTGCAGTGATTTTATGGTGTGTTTGTAGCTATGGAGGCCGTAAGAAGAAGAAAGCAGCGCCACCCACGTACACATCTAGTGCTCTTAGGCCAACGCCAAGGCCAAGCCGTGACCTTGAACTTGGGGAAGCTAAGAATGGTGGGATGACTATTCTTGCTGGGGCTGCTGCTGGCTTAGCTACTGCAGCTGTGGTTACCAGTTTAACCAATGATGGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAGGGGGAGGTGATGGTGGCGGTGGTGGTTGTGGAGGTGGATGTGGTGGGGGCTGTGGCGGTGGTTGTGGTGGTGGCTGTGGTGGTTGA

Protein sequence

MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEAKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGCGGGCGGGCGGGCGG

Homology

[Close]

BLAST of Csor.00g243290.m01 vs. NCBI nr
Match: KAG6577050.1 (hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (517), Expect = 4.39e-65
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGCGGGCGGG 120
           KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGCGGGCGGG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGCGGGCGGG 120

Query: 121 CGGGCGG 127
           CGGGCGG
Sbjct: 121 CGGGCGG 127

[Close]

BLAST of Csor.00g243290.m01 vs. NCBI nr
Match: XP_022931328.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 191 bits (485), Expect = 3.53e-60
Identity = 125/131 (95.42%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDG----GGGGCGGGCGGG 120
           KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGG  EEGGGDG    GGGGCGGGCGGG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGG--EEGGGDGSGGDGGGGCGGGCGGG 120

Query: 121 CGGGCGGGCGG 127
           CGGGCGGGCGG
Sbjct: 121 CGGGCGGGCGG 129

[Close]

BLAST of Csor.00g243290.m01 vs. NCBI nr
Match: XP_023552868.1 (glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188 bits (478), Expect = 3.98e-59
Identity = 123/129 (95.35%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGG--GGGEEGGGDGGGGGCGGGCGGGCG 120
           KNGGMTILAGAAAGLATAAVVTSL+NDGGGGGGG  GGG+ GGGDGGGG CGGGCGGGCG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGG-CGGGCGGGCG 120

Query: 121 GGCGGGCGG 127
           GGCGGGCGG
Sbjct: 121 GGCGGGCGG 128

[Close]

BLAST of Csor.00g243290.m01 vs. NCBI nr
Match: XP_022985127.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 184 bits (467), Expect = 1.89e-57
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLIT GCVIASAVILWCVCSYGGRKKKK APPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGG-GGEEGGGDGGGGGCGGGCGGGCGG 120
           KNGGMTILAGAAAGLATAAVVTSL+NDGGGGGGGG GG++GGG  GGGGCGGGCGGGCGG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGGGCGG 120

Query: 121 GCGGGCGG 127
           GCGGGCGG
Sbjct: 121 GCGGGCGG 128

[Close]

BLAST of Csor.00g243290.m01 vs. NCBI nr
Match: KGN53550.1 (hypothetical protein Csa_015259 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 4.03e-20
Identity = 79/130 (60.77%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60

Query: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGCGGG 120
                NGGMTIL GAAAGLATAAVVT+L++ GGGGGG  G    G  GGGGGCGGGCGG 
Sbjct: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGG- 120

Query: 121 CGGGCGGGCG 126
           CGGGCGGGCG
Sbjct: 121 CGGGCGGGCG 125

[Close]

BLAST of Csor.00g243290.m01 vs. ExPASy TrEMBL
Match: A0A6J1EY84 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 SV=1)

HSP 1 Score: 191 bits (485), Expect = 1.71e-60
Identity = 125/131 (95.42%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDG----GGGGCGGGCGGG 120
           KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGG  EEGGGDG    GGGGCGGGCGGG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGG--EEGGGDGSGGDGGGGCGGGCGGG 120

Query: 121 CGGGCGGGCGG 127
           CGGGCGGGCGG
Sbjct: 121 CGGGCGGGCGG 129

[Close]

BLAST of Csor.00g243290.m01 vs. ExPASy TrEMBL
Match: A0A6J1J409 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 9.14e-58
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLIT GCVIASAVILWCVCSYGGRKKKK APPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGG-GGEEGGGDGGGGGCGGGCGGGCGG 120
           KNGGMTILAGAAAGLATAAVVTSL+NDGGGGGGGG GG++GGG  GGGGCGGGCGGGCGG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGGGCGG 120

Query: 121 GCGGGCGG 127
           GCGGGCGG
Sbjct: 121 GCGGGCGG 128

[Close]

BLAST of Csor.00g243290.m01 vs. ExPASy TrEMBL
Match: A0A0A0KVE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.95e-20
Identity = 79/130 (60.77%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60

Query: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGCGGG 120
                NGGMTIL GAAAGLATAAVVT+L++ GGGGGG  G    G  GGGGGCGGGCGG 
Sbjct: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGG- 120

Query: 121 CGGGCGGGCG 126
           CGGGCGGGCG
Sbjct: 121 CGGGCGGGCG 125

[Close]

BLAST of Csor.00g243290.m01 vs. ExPASy TrEMBL
Match: A0A5J5AB60 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_008100 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.53e-12
Identity = 67/126 (53.17%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPS-RDLELGE 60
           M+ YAI LI CG V A+ ++L C+C+ GGRKKK    P    S     P+ + RD+E GE
Sbjct: 139 MKAYAIALIVCGSVAAAVIVLCCLCN-GGRKKKGTNHPAVRQSVSATPPQQAYRDVERGE 198

Query: 61  ------AKNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGC 119
                  ++G M ILAGAAA  A AAV+ S ++ GG GG  GGG   GGDGGGGGCGGGC
Sbjct: 199 KPKSSGTRDGSMVILAGAAAATAAAAVIVSTSSGGGCGGDSGGG---GGDGGGGGCGGGC 258

[Close]

BLAST of Csor.00g243290.m01 vs. ExPASy TrEMBL
Match: A0A2P5BBV5 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252870 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.11e-11
Identity = 54/113 (47.79%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPT---------YTSSALRPTPRP 60
           M+ YAI L+ CG VIA+ +IL C+CS G  KKK+   P           T SA RP P  
Sbjct: 1   MKAYAIALVACGSVIAAVIILVCLCSRGNNKKKQTRTPNPIRMQSLSGTTPSAQRPYPA- 60

Query: 61  SRDLELGEA-------KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGG 97
             D+E GE        K+GGM ILAGA A L T A V S+++  GGGGGGGGG
Sbjct: 61  GPDIERGEGTMKSSGTKDGGMVILAGAGATLVTTAAVASISSGCGGGGGGGGG 112

The following BLAST results are available for this feature:

BLAST of Csor.00g243290.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g243290.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577050.1	4.39e-65	100.00	hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931328.1	3.53e-60	95.42	glycine-rich protein 5-like [Cucurbita moschata]	[more]
XP_023552868.1	3.98e-59	95.35	glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985127.1	1.89e-57	93.75	glycine-rich protein 5-like [Cucurbita maxima]	[more]
KGN53550.1	4.03e-20	60.77	hypothetical protein Csa_015259 [Cucumis sativus]	[more]

BLAST of Csor.00g243290.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY84	1.71e-60	95.42	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 S...	[more]
A0A6J1J409	9.14e-58	93.75	glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=...	[more]
A0A0A0KVE1	1.95e-20	60.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1	[more]
A0A5J5AB60	7.53e-12	53.17	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_008100 PE=4 SV=1	[more]
A0A2P5BBV5	1.11e-11	47.79	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252870 PE...	[more]

BLAST of Csor.00g243290.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..55

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g243290	Csor.00g243290	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g243290.m01.CDS01	Csor.00g243290.m01.CDS01	CDS

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g243290.m01.single01	Csor.00g243290.m01.single01	single

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g243290.m01.stop_codon01	Csor.00g243290.m01.stop_codon01	stop_codon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g243290.m01.start_codon01	Csor.00g243290.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g243290.m01	Csor.00g243290.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane