Csor.00g241180.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g241180.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-type E3 ubiquitin transferase
Location	Csor_Chr17: 5133920 .. 5134834 (-)
Sequence length	633
RNA-Seq Expression	Csor.00g241180.m01
Synteny	Csor.00g241180.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAGAGCATCTCTTTTTGCTGACAACAGACTGTTTCTTAAGTGAGTTTTAAAGGATGAAGTGTAGTTAGGATGTGCATTGGACAATGTTATGTTGAATTCAATTTTATTGTGCAGTGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAAAAGGGTAGACAACCGTTGTCCGACGTGCAGACAAGAGCTCGGCGATATCAGGTGTCTAGCGTTAGAGAAAATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTTGGGTGCCGGAGATATTGCCTTACTACAGCAAACCAAACACGAGTCTGCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTTCCTTGTTTCTCATCTTCGTGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAACCCATGCGAAGTCGAAAAATGCTACATGGATGCTGACTGTGAGTATCTGTTGTTTTGATTCAGCTCAGTTATTTTTACAAACTATCTGATGCTCTTATTGTTGGTTTGCTCAGGTGTTTCACTGTTTTGGGCAGTATTTCTGTCTTCCATTTGAAGCCTTTCAGCTGGGTATGGCACCCGGTTACATGGCGTTTCTCCGATTTCATGGGGGACGAAACGGCATGCTCGAAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGTTGATATGGGAGGGCAACCCTCGAAGCATTCGTGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCTCATTATACAACGAAACATGGCGCTCTTCTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTTCGGATCAAGTCAGGACGGATTTGGAAAGAAACAGAATAAAACAGTAA

mRNA sequence

ATGGTCAGAGCATCTCTTTTTGCTGACAACAGACTGTTTCTTAATGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAAAAGGGTAGACAACCGTTGTCCGACGTGCAGACAAGAGCTCGGCGATATCAGCAAACCAAACACGAGTCTGCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTTCCTTGTTTCTCATCTTCGTGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAACCCATGCGAAGTCGAAAAATGCTACATGGATGCTGACTCCTTTCAGCTGGGTATGGCACCCGGTTACATGGCGTTTCTCCGATTTCATGGGGGACGAAACGGCATGCTCGAAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGTTGATATGGGAGGGCAACCCTCGAAGCATTCGTGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCTCATTATACAACGAAACATGGCGCTCTTCTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTTCGGATCAAGTCAGGACGGATTTGGAAAGAAACAGAATAAAACAGTAA

Coding sequence (CDS)

ATGGTCAGAGCATCTCTTTTTGCTGACAACAGACTGTTTCTTAATGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAAAAGGGTAGACAACCGTTGTCCGACGTGCAGACAAGAGCTCGGCGATATCAGCAAACCAAACACGAGTCTGCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTTCCTTGTTTCTCATCTTCGTGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAACCCATGCGAAGTCGAAAAATGCTACATGGATGCTGACTCCTTTCAGCTGGGTATGGCACCCGGTTACATGGCGTTTCTCCGATTTCATGGGGGACGAAACGGCATGCTCGAAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGTTGATATGGGAGGGCAACCCTCGAAGCATTCGTGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCTCATTATACAACGAAACATGGCGCTCTTCTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTTCGGATCAAGTCAGGACGGATTTGGAAAGAAACAGAATAAAACAGTAA

Protein sequence

MVRASLFADNRLFLNAPMVIPSVLHVKKGRQPLSDVQTRARRYQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVEKCYMDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSFGWRKERAEASDQVRTDLERNRIKQ

Homology

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy Swiss-Prot
Match: Q84JL3 (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.6e-37
Identity = 87/165 (52.73%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHE+                 + G   FLV+HLRDDHKVDMHSGCTFNHRYVK+NP
Sbjct: 135 YSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNP 194

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE          C+     +  ++FQLGMAP YMAFLRF G       NY+YSLEVGG
Sbjct: 195 REVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDET-EARNYNYSLEVGG 254

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 192
            GRKLIWEG PRS+RD+H+KVRDSHDG +        F  G RKE
Sbjct: 255 YGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKE 298

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy Swiss-Prot
Match: Q8S3N1 (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-36
Identity = 80/147 (54.42%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHES                  +G   FLV+HLRDDHKVDMH+GCTFNHRYVK+NP
Sbjct: 118 YSKLKHESQCNFRPYSCPYAGSECAAVGDITFLVAHLRDDHKVDMHTGCTFNHRYVKSNP 177

Query: 103 CEVE---------KCY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE         +C+     +  ++FQLGMAP YMAFLRF G  +    NY+YSLEVGG
Sbjct: 178 REVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDD-ARNYTYSLEVGG 237

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDG 176
           +GRK  WEG PRS+RD+H+KVRDSHDG
Sbjct: 238 SGRKQTWEGTPRSVRDSHRKVRDSHDG 263

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy Swiss-Prot
Match: Q9STN8 (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-34
Identity = 84/165 (50.91%), Postives = 100/165 (60.61%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHES                 ++G   FLV+HLRDDHKVDMH+G TFNHRYVK+NP
Sbjct: 136 YSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHKVDMHAGSTFNHRYVKSNP 195

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE          C+     +  ++FQLGM P YMAFLRF G       +YSYSLEVGG
Sbjct: 196 REVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEED-ARSYSYSLEVGG 255

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 192
           +GRKL WEG PRSIRD+H+KVRDS+DG +        F  G RKE
Sbjct: 256 SGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKE 299

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy Swiss-Prot
Match: Q10L91 (E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.9e-34
Identity = 83/165 (50.30%), Postives = 103/165 (62.42%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHES                 + G   +LV+HL+DDHKVDMH+GCTFNHRYVK+NP
Sbjct: 125 YCKLKHESQCQYRPYSCPYAGSECTVAGDIPYLVNHLKDDHKVDMHNGCTFNHRYVKSNP 184

Query: 103 CEVE---------KCY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE          C+     +  ++FQLGMAP Y+AFLRF G  +   +NYSYSLEVGG
Sbjct: 185 HEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGD-DLEAKNYSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 192
            GRK+IW+G PRSIRD+H+KVRDS+DG +        F  G RKE
Sbjct: 245 TGRKMIWQGVPRSIRDSHRKVRDSYDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy Swiss-Prot
Match: Q9M2P4 (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.6e-32
Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHE                  + G    LV HL+DDHKVDMH GCTFNHRYVK+NP
Sbjct: 132 YSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGCTFNHRYVKSNP 191

Query: 103 CEVE---------KCY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE          C+     +  ++FQLGMAP YMAFLRF G  N   + +SYSLEVG 
Sbjct: 192 HEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDEN-EAKKFSYSLEVGA 251

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDG 176
           +GRKL W+G PRSIRD+H+KVRDS DG
Sbjct: 252 HGRKLTWQGIPRSIRDSHRKVRDSQDG 277

[Close]

BLAST of Csor.00g241180.m01 vs. NCBI nr
Match: KAG6575293.1 (E3 ubiquitin-protein ligase SINAT3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 430 bits (1105), Expect = 5.05e-152
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MVRASLFADNRLFLNAPMVIPSVLHVKKGRQPLSDVQTRARRYQQTKHESAVTLDHIPAL 60
           MVRASLFADNRLFLNAPMVIPSVLHVKKGRQPLSDVQTRARRYQQTKHESAVTLDHIPAL
Sbjct: 1   MVRASLFADNRLFLNAPMVIPSVLHVKKGRQPLSDVQTRARRYQQTKHESAVTLDHIPAL 60

Query: 61  MLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVEKCYMDADSFQLGMA 120
           MLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVEKCYMDADSFQLGMA
Sbjct: 61  MLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVEKCYMDADSFQLGMA 120

Query: 121 PGYMAFLRFHGGRNGMLENYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNE 180
           PGYMAFLRFHGGRNGMLENYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNE
Sbjct: 121 PGYMAFLRFHGGRNGMLENYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNE 180

Query: 181 TWRSSFGWRKERAEASDQVRTDLERNRIKQ 210
           TWRSSFGWRKERAEASDQVRTDLERNRIKQ
Sbjct: 181 TWRSSFGWRKERAEASDQVRTDLERNRIKQ 210

[Close]

BLAST of Csor.00g241180.m01 vs. NCBI nr
Match: XP_022929797.1 (E3 ubiquitin-protein ligase SINAT3-like [Cucurbita moschata] >XP_022992340.1 E3 ubiquitin-protein ligase SINAT3-like [Cucurbita maxima] >XP_023548870.1 E3 ubiquitin-protein ligase SINAT3-like [Cucurbita pepo subsp. pepo] >KAG6575290.1 E3 ubiquitin-protein ligase SINAT3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013845.1 E3 ubiquitin-protein ligase SINAT3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6575314.1 E3 ubiquitin-protein ligase SINAT3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (440), Expect = 1.06e-49
Identity = 98/165 (59.39%), Postives = 105/165 (63.64%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHESA                + G   FLVSHLRDDHKVDMHSGCTFNHRYVKANP
Sbjct: 125 YSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANP 184

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
           CEVE          C+     +  ++FQLGMAP YMAFLRF G       NYSYSLEVGG
Sbjct: 185 CEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDA-RNYSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 191
           NGRKLIWEGNPRSIRDNHKKVRDSHDG +        F  G RKE
Sbjct: 245 NGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. NCBI nr
Match: XP_008459990.1 (PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Cucumis melo] >KAA0039905.1 E3 ubiquitin-protein ligase SINAT3-like [Cucumis melo var. makuwa] >TYK24595.1 E3 ubiquitin-protein ligase SINAT3-like [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (437), Expect = 3.00e-49
Identity = 97/165 (58.79%), Postives = 106/165 (64.24%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHESA                + G   FLVSHLRDDHKVDMHSGCTFNHRYVKANP
Sbjct: 125 YSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANP 184

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
           CEVE          C+     +  ++FQLGMAP YMAFLRF G  +    N+SYSLEVGG
Sbjct: 185 CEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDESDA-RNFSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 191
           NGRKLIWEGNPRSIRDNHKKVRDSHDG +        F  G RKE
Sbjct: 245 NGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. NCBI nr
Match: XP_038876068.1 (E3 ubiquitin-protein ligase SINAT3-like [Benincasa hispida])

HSP 1 Score: 172 bits (437), Expect = 3.00e-49
Identity = 98/165 (59.39%), Postives = 105/165 (63.64%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHESA                + G   FLVSHLRDDHKVDMHSGCTFNHRYVKANP
Sbjct: 125 YSKLKHESACYYRPYICPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANP 184

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
           CEVE          C+     +  ++FQLGMAP YMAFLRF G       NYSYSLEVGG
Sbjct: 185 CEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDA-RNYSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 191
           NGRKLIWEGNPRSIRDNHKKVRDSHDG +        F  G RKE
Sbjct: 245 NGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. NCBI nr
Match: XP_004140587.1 (E3 ubiquitin-protein ligase SINAT3 [Cucumis sativus] >KGN46356.1 hypothetical protein Csa_004964 [Cucumis sativus])

HSP 1 Score: 172 bits (436), Expect = 4.24e-49
Identity = 97/165 (58.79%), Postives = 105/165 (63.64%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHESA                + G   FLVSHLRDDHKVDMHSGCTFNHRYVKANP
Sbjct: 125 YSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANP 184

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
           CEVE          C+     +  ++FQLGMAP YMAFLRF G       N+SYSLEVGG
Sbjct: 185 CEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDA-RNFSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 191
           NGRKLIWEGNPRSIRDNHKKVRDSHDG +        F  G RKE
Sbjct: 245 NGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy TrEMBL
Match: A0A6J1JVF7 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111488681 PE=3 SV=1)

HSP 1 Score: 174 bits (440), Expect = 5.16e-50
Identity = 98/165 (59.39%), Postives = 105/165 (63.64%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHESA                + G   FLVSHLRDDHKVDMHSGCTFNHRYVKANP
Sbjct: 125 YSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANP 184

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
           CEVE          C+     +  ++FQLGMAP YMAFLRF G       NYSYSLEVGG
Sbjct: 185 CEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDA-RNYSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 191
           NGRKLIWEGNPRSIRDNHKKVRDSHDG +        F  G RKE
Sbjct: 245 NGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy TrEMBL
Match: A0A6J1ENP4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111436299 PE=3 SV=1)

HSP 1 Score: 174 bits (440), Expect = 5.16e-50
Identity = 98/165 (59.39%), Postives = 105/165 (63.64%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHESA                + G   FLVSHLRDDHKVDMHSGCTFNHRYVKANP
Sbjct: 125 YSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANP 184

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
           CEVE          C+     +  ++FQLGMAP YMAFLRF G       NYSYSLEVGG
Sbjct: 185 CEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDA-RNYSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 191
           NGRKLIWEGNPRSIRDNHKKVRDSHDG +        F  G RKE
Sbjct: 245 NGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy TrEMBL
Match: A0A5D3DLU6 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001410 PE=3 SV=1)

HSP 1 Score: 172 bits (437), Expect = 1.45e-49
Identity = 97/165 (58.79%), Postives = 106/165 (64.24%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHESA                + G   FLVSHLRDDHKVDMHSGCTFNHRYVKANP
Sbjct: 125 YSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANP 184

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
           CEVE          C+     +  ++FQLGMAP YMAFLRF G  +    N+SYSLEVGG
Sbjct: 185 CEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDESDA-RNFSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 191
           NGRKLIWEGNPRSIRDNHKKVRDSHDG +        F  G RKE
Sbjct: 245 NGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy TrEMBL
Match: A0A1S3CBH3 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498939 PE=3 SV=1)

HSP 1 Score: 172 bits (437), Expect = 1.45e-49
Identity = 97/165 (58.79%), Postives = 106/165 (64.24%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHESA                + G   FLVSHLRDDHKVDMHSGCTFNHRYVKANP
Sbjct: 125 YSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANP 184

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
           CEVE          C+     +  ++FQLGMAP YMAFLRF G  +    N+SYSLEVGG
Sbjct: 185 CEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDESDA-RNFSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 191
           NGRKLIWEGNPRSIRDNHKKVRDSHDG +        F  G RKE
Sbjct: 245 NGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. ExPASy TrEMBL
Match: A0A0A0KF08 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G087840 PE=3 SV=1)

HSP 1 Score: 172 bits (436), Expect = 2.05e-49
Identity = 97/165 (58.79%), Postives = 105/165 (63.64%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHESA                + G   FLVSHLRDDHKVDMHSGCTFNHRYVKANP
Sbjct: 125 YSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANP 184

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
           CEVE          C+     +  ++FQLGMAP YMAFLRF G       N+SYSLEVGG
Sbjct: 185 CEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDA-RNFSYSLEVGG 244

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 191
           NGRKLIWEGNPRSIRDNHKKVRDSHDG +        F  G RKE
Sbjct: 245 NGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKE 288

[Close]

BLAST of Csor.00g241180.m01 vs. TAIR 10
Match: AT3G61790.1 (Protein with RING/U-box and TRAF-like domains )

HSP 1 Score: 156.4 bits (394), Expect = 2.6e-38
Identity = 87/165 (52.73%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHE+                 + G   FLV+HLRDDHKVDMHSGCTFNHRYVK+NP
Sbjct: 135 YSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNP 194

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE          C+     +  ++FQLGMAP YMAFLRF G       NY+YSLEVGG
Sbjct: 195 REVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDET-EARNYNYSLEVGG 254

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 192
            GRKLIWEG PRS+RD+H+KVRDSHDG +        F  G RKE
Sbjct: 255 YGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKE 298

[Close]

BLAST of Csor.00g241180.m01 vs. TAIR 10
Match: AT5G53360.1 (TRAF-like superfamily protein )

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-37
Identity = 80/147 (54.42%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHES                  +G   FLV+HLRDDHKVDMH+GCTFNHRYVK+NP
Sbjct: 42  YSKLKHESQCNFRPYSCPYAGSECAAVGDITFLVAHLRDDHKVDMHTGCTFNHRYVKSNP 101

Query: 103 CEVE---------KCY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE         +C+     +  ++FQLGMAP YMAFLRF G  +    NY+YSLEVGG
Sbjct: 102 REVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDD-ARNYTYSLEVGG 161

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDG 176
           +GRK  WEG PRS+RD+H+KVRDSHDG
Sbjct: 162 SGRKQTWEGTPRSVRDSHRKVRDSHDG 187

[Close]

BLAST of Csor.00g241180.m01 vs. TAIR 10
Match: AT4G27880.1 (Protein with RING/U-box and TRAF-like domains )

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-35
Identity = 84/165 (50.91%), Postives = 100/165 (60.61%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHES                 ++G   FLV+HLRDDHKVDMH+G TFNHRYVK+NP
Sbjct: 136 YSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHKVDMHAGSTFNHRYVKSNP 195

Query: 103 CEVEK---------CY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE          C+     +  ++FQLGM P YMAFLRF G       +YSYSLEVGG
Sbjct: 196 REVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEED-ARSYSYSLEVGG 255

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSF--GWRKE 192
           +GRKL WEG PRSIRD+H+KVRDS+DG +        F  G RKE
Sbjct: 256 SGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKE 299

[Close]

BLAST of Csor.00g241180.m01 vs. TAIR 10
Match: AT3G58040.1 (seven in absentia of Arabidopsis 2 )

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-33
Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHE                  + G    LV HL+DDHKVDMH GCTFNHRYVK+NP
Sbjct: 132 YSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGCTFNHRYVKSNP 191

Query: 103 CEVE---------KCY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE          C+     +  ++FQLGMAP YMAFLRF G  N   + +SYSLEVG 
Sbjct: 192 HEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDEN-EAKKFSYSLEVGA 251

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDG 176
           +GRKL W+G PRSIRD+H+KVRDS DG
Sbjct: 252 HGRKLTWQGIPRSIRDSHRKVRDSQDG 277

[Close]

BLAST of Csor.00g241180.m01 vs. TAIR 10
Match: AT2G41980.1 (Protein with RING/U-box and TRAF-like domains )

HSP 1 Score: 138.3 bits (347), Expect = 7.2e-33
Identity = 75/147 (51.02%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 43  YQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANP 102
           Y + KHE                  + G    LV HL+DDHKVDMH GCTFNHRYVK+NP
Sbjct: 129 YSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCTFNHRYVKSNP 188

Query: 103 CEVE---------KCY-----MDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGG 162
            EVE          C+     +  ++FQLGMAP YMAFLRF G  N   + +SYSLEVG 
Sbjct: 189 HEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDEN-EAKKFSYSLEVGA 248

Query: 163 NGRKLIWEGNPRSIRDNHKKVRDSHDG 176
           + RKL W+G PRSIRD+H+KVRDS DG
Sbjct: 249 HSRKLTWQGIPRSIRDSHRKVRDSQDG 274

The following BLAST results are available for this feature:

BLAST of Csor.00g241180.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JL3	3.6e-37	52.73	E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=...	[more]
Q8S3N1	2.3e-36	54.42	E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=...	[more]
Q9STN8	2.2e-34	50.91	E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=...	[more]
Q10L91	4.9e-34	50.30	E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS...	[more]
Q9M2P4	4.6e-32	51.70	E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=...	[more]

BLAST of Csor.00g241180.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575293.1	5.05e-152	100.00	E3 ubiquitin-protein ligase SINAT3, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022929797.1	1.06e-49	59.39	E3 ubiquitin-protein ligase SINAT3-like [Cucurbita moschata] >XP_022992340.1 E3 ...	[more]
XP_008459990.1	3.00e-49	58.79	PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Cucumis melo] >KAA0039905.1 ...	[more]
XP_038876068.1	3.00e-49	59.39	E3 ubiquitin-protein ligase SINAT3-like [Benincasa hispida]	[more]
XP_004140587.1	4.24e-49	58.79	E3 ubiquitin-protein ligase SINAT3 [Cucumis sativus] >KGN46356.1 hypothetical pr...	[more]

BLAST of Csor.00g241180.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVF7	5.16e-50	59.39	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111488681 P...	[more]
A0A6J1ENP4	5.16e-50	59.39	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111436299...	[more]
A0A5D3DLU6	1.45e-49	58.79	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CBH3	1.45e-49	58.79	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498939 PE=3 ...	[more]
A0A0A0KF08	2.05e-49	58.79	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G087840 PE...	[more]

BLAST of Csor.00g241180.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61790.1	2.6e-38	52.73	Protein with RING/U-box and TRAF-like domains	[more]
AT5G53360.1	1.7e-37	54.42	TRAF-like superfamily protein	[more]
AT4G27880.1	1.6e-35	50.91	Protein with RING/U-box and TRAF-like domains	[more]
AT3G58040.1	3.2e-33	51.70	seven in absentia of Arabidopsis 2	[more]
AT2G41980.1	7.2e-33	51.02	Protein with RING/U-box and TRAF-like domains	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018121	Seven-in-absentia protein, TRAF-like domain	PFAM	PF03145	Sina	coord: 43..177 e-value: 7.1E-21 score: 75.1
IPR008974	TRAF-like	GENE3D	2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	coord: 78..189 e-value: 1.9E-14 score: 55.6
None	No IPR available	PANTHER	PTHR10315:SF42	OS05G0238200 PROTEIN	coord: 43..179
None	No IPR available	PANTHER	PTHR10315	E3 UBIQUITIN PROTEIN LIGASE SIAH	coord: 43..179
None	No IPR available	SUPERFAMILY	49599	TRAF domain-like	coord: 74..175

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g241180	Csor.00g241180	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g241180.m01.CDS01	Csor.00g241180.m01.CDS01	CDS
Csor.00g241180.m01.CDS02	Csor.00g241180.m01.CDS02	CDS
Csor.00g241180.m01.CDS03	Csor.00g241180.m01.CDS03	CDS
Csor.00g241180.m01.CDS04	Csor.00g241180.m01.CDS04	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g241180.m01.stop_codon01	Csor.00g241180.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g241180.m01.terminal01	Csor.00g241180.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g241180.m01.intron01	Csor.00g241180.m01.intron01	intron
Csor.00g241180.m01.intron02	Csor.00g241180.m01.intron02	intron
Csor.00g241180.m01.intron03	Csor.00g241180.m01.intron03	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g241180.m01.internal01	Csor.00g241180.m01.internal01	internal
Csor.00g241180.m01.internal02	Csor.00g241180.m01.internal02	internal

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g241180.m01.initial01	Csor.00g241180.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g241180.m01.start_codon01	Csor.00g241180.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g241180.m01	Csor.00g241180.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity