Csor.00g241180 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCAGAGCATCTCTTTTTGCTGACAACAGACTGTTTCTTAAGTGAGTTTTAAAGGATGAAGTGTAGTTAGGATGTGCATTGGACAATGTTATGTTGAATTCAATTTTATTGTGCAGTGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAAAAGGGTAGACAACCGTTGTCCGACGTGCAGACAAGAGCTCGGCGATATCAGGTGTCTAGCGTTAGAGAAAATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTTGGGTGCCGGAGATATTGCCTTACTACAGCAAACCAAACACGAGTCTGCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTTCCTTGTTTCTCATCTTCGTGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAACCCATGCGAAGTCGAAAAATGCTACATGGATGCTGACTGTGAGTATCTGTTGTTTTGATTCAGCTCAGTTATTTTTACAAACTATCTGATGCTCTTATTGTTGGTTTGCTCAGGTGTTTCACTGTTTTGGGCAGTATTTCTGTCTTCCATTTGAAGCCTTTCAGCTGGGTATGGCACCCGGTTACATGGCGTTTCTCCGATTTCATGGGGGACGAAACGGCATGCTCGAAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGTTGATATGGGAGGGCAACCCTCGAAGCATTCGTGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCTCATTATACAACGAAACATGGCGCTCTTCTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTTCGGATCAAGTCAGGACGGATTTGGAAAGAAACAGAATAAAACAGTAA ATGGTCAGAGCATCTCTTTTTGCTGACAACAGACTGTTTCTTAATGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAAAAGGGTAGACAACCGTTGTCCGACGTGCAGACAAGAGCTCGGCGATATCAGCAAACCAAACACGAGTCTGCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTTCCTTGTTTCTCATCTTCGTGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAACCCATGCGAAGTCGAAAAATGCTACATGGATGCTGACTCCTTTCAGCTGGGTATGGCACCCGGTTACATGGCGTTTCTCCGATTTCATGGGGGACGAAACGGCATGCTCGAAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGTTGATATGGGAGGGCAACCCTCGAAGCATTCGTGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCTCATTATACAACGAAACATGGCGCTCTTCTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTTCGGATCAAGTCAGGACGGATTTGGAAAGAAACAGAATAAAACAGTAA ATGGTCAGAGCATCTCTTTTTGCTGACAACAGACTGTTTCTTAATGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAAAAGGGTAGACAACCGTTGTCCGACGTGCAGACAAGAGCTCGGCGATATCAGCAAACCAAACACGAGTCTGCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTTCCTTGTTTCTCATCTTCGTGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAACCCATGCGAAGTCGAAAAATGCTACATGGATGCTGACTCCTTTCAGCTGGGTATGGCACCCGGTTACATGGCGTTTCTCCGATTTCATGGGGGACGAAACGGCATGCTCGAAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGTTGATATGGGAGGGCAACCCTCGAAGCATTCGTGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCTCATTATACAACGAAACATGGCGCTCTTCTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTTCGGATCAAGTCAGGACGGATTTGGAAAGAAACAGAATAAAACAGTAA MVRASLFADNRLFLNAPMVIPSVLHVKKGRQPLSDVQTRARRYQQTKHESAVTLDHIPALMLDQTVQLMGIFLFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVEKCYMDADSFQLGMAPGYMAFLRFHGGRNGMLENYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGSLYNETWRSSFGWRKERAEASDQVRTDLERNRIKQ Homology
BLAST of Csor.00g241180 vs. ExPASy Swiss-Prot
Match: Q84JL3 (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 3.6e-37 Identity = 87/165 (52.73%), Postives = 101/165 (61.21%), Query Frame = 0
BLAST of Csor.00g241180 vs. ExPASy Swiss-Prot
Match: Q8S3N1 (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2) HSP 1 Score: 153.7 bits (387), Expect = 2.3e-36 Identity = 80/147 (54.42%), Postives = 96/147 (65.31%), Query Frame = 0
BLAST of Csor.00g241180 vs. ExPASy Swiss-Prot
Match: Q9STN8 (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 2.2e-34 Identity = 84/165 (50.91%), Postives = 100/165 (60.61%), Query Frame = 0
BLAST of Csor.00g241180 vs. ExPASy Swiss-Prot
Match: Q10L91 (E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 4.9e-34 Identity = 83/165 (50.30%), Postives = 103/165 (62.42%), Query Frame = 0
BLAST of Csor.00g241180 vs. ExPASy Swiss-Prot
Match: Q9M2P4 (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 4.6e-32 Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 0
BLAST of Csor.00g241180 vs. NCBI nr
Match: KAG6575293.1 (E3 ubiquitin-protein ligase SINAT3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 430 bits (1105), Expect = 5.05e-152 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Csor.00g241180 vs. NCBI nr
Match: XP_022929797.1 (E3 ubiquitin-protein ligase SINAT3-like [Cucurbita moschata] >XP_022992340.1 E3 ubiquitin-protein ligase SINAT3-like [Cucurbita maxima] >XP_023548870.1 E3 ubiquitin-protein ligase SINAT3-like [Cucurbita pepo subsp. pepo] >KAG6575290.1 E3 ubiquitin-protein ligase SINAT3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013845.1 E3 ubiquitin-protein ligase SINAT3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6575314.1 E3 ubiquitin-protein ligase SINAT3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 174 bits (440), Expect = 1.06e-49 Identity = 98/165 (59.39%), Postives = 105/165 (63.64%), Query Frame = 0
BLAST of Csor.00g241180 vs. NCBI nr
Match: XP_008459990.1 (PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Cucumis melo] >KAA0039905.1 E3 ubiquitin-protein ligase SINAT3-like [Cucumis melo var. makuwa] >TYK24595.1 E3 ubiquitin-protein ligase SINAT3-like [Cucumis melo var. makuwa]) HSP 1 Score: 172 bits (437), Expect = 3.00e-49 Identity = 97/165 (58.79%), Postives = 106/165 (64.24%), Query Frame = 0
BLAST of Csor.00g241180 vs. NCBI nr
Match: XP_038876068.1 (E3 ubiquitin-protein ligase SINAT3-like [Benincasa hispida]) HSP 1 Score: 172 bits (437), Expect = 3.00e-49 Identity = 98/165 (59.39%), Postives = 105/165 (63.64%), Query Frame = 0
BLAST of Csor.00g241180 vs. NCBI nr
Match: XP_004140587.1 (E3 ubiquitin-protein ligase SINAT3 [Cucumis sativus] >KGN46356.1 hypothetical protein Csa_004964 [Cucumis sativus]) HSP 1 Score: 172 bits (436), Expect = 4.24e-49 Identity = 97/165 (58.79%), Postives = 105/165 (63.64%), Query Frame = 0
BLAST of Csor.00g241180 vs. ExPASy TrEMBL
Match: A0A6J1JVF7 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111488681 PE=3 SV=1) HSP 1 Score: 174 bits (440), Expect = 5.16e-50 Identity = 98/165 (59.39%), Postives = 105/165 (63.64%), Query Frame = 0
BLAST of Csor.00g241180 vs. ExPASy TrEMBL
Match: A0A6J1ENP4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111436299 PE=3 SV=1) HSP 1 Score: 174 bits (440), Expect = 5.16e-50 Identity = 98/165 (59.39%), Postives = 105/165 (63.64%), Query Frame = 0
BLAST of Csor.00g241180 vs. ExPASy TrEMBL
Match: A0A5D3DLU6 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001410 PE=3 SV=1) HSP 1 Score: 172 bits (437), Expect = 1.45e-49 Identity = 97/165 (58.79%), Postives = 106/165 (64.24%), Query Frame = 0
BLAST of Csor.00g241180 vs. ExPASy TrEMBL
Match: A0A1S3CBH3 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498939 PE=3 SV=1) HSP 1 Score: 172 bits (437), Expect = 1.45e-49 Identity = 97/165 (58.79%), Postives = 106/165 (64.24%), Query Frame = 0
BLAST of Csor.00g241180 vs. ExPASy TrEMBL
Match: A0A0A0KF08 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G087840 PE=3 SV=1) HSP 1 Score: 172 bits (436), Expect = 2.05e-49 Identity = 97/165 (58.79%), Postives = 105/165 (63.64%), Query Frame = 0
BLAST of Csor.00g241180 vs. TAIR 10
Match: AT3G61790.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 156.4 bits (394), Expect = 2.6e-38 Identity = 87/165 (52.73%), Postives = 101/165 (61.21%), Query Frame = 0
BLAST of Csor.00g241180 vs. TAIR 10
Match: AT5G53360.1 (TRAF-like superfamily protein ) HSP 1 Score: 153.7 bits (387), Expect = 1.7e-37 Identity = 80/147 (54.42%), Postives = 96/147 (65.31%), Query Frame = 0
BLAST of Csor.00g241180 vs. TAIR 10
Match: AT4G27880.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 147.1 bits (370), Expect = 1.6e-35 Identity = 84/165 (50.91%), Postives = 100/165 (60.61%), Query Frame = 0
BLAST of Csor.00g241180 vs. TAIR 10
Match: AT3G58040.1 (seven in absentia of Arabidopsis 2 ) HSP 1 Score: 139.4 bits (350), Expect = 3.2e-33 Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 0
BLAST of Csor.00g241180 vs. TAIR 10
Match: AT2G41980.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 138.3 bits (347), Expect = 7.2e-33 Identity = 75/147 (51.02%), Postives = 89/147 (60.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|