Csor.00g224520.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g224520.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	WD repeat-containing protein 91-like protein
Location	Csor_Chr02: 6843353 .. 6843868 (+)
Sequence length	516
RNA-Seq Expression	Csor.00g224520.m01
Synteny	Csor.00g224520.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTGAAGCGCTGAAGAGGGATTTGGAGTGTCTTGCTGAAAATCAGCAACAAAGGGTGCGTTACTACGAGAGTAGAGCCAATTACACGACTCTGGGCTACCTGGCCTGGCTGCGCTTCTTCTACTTTGCTGTCTCCTCTAATTCCTCCTCTCTCCACTGTGTTCATTGGCCCATGGTTTTGGGTTTGAGTCTTTCCTCTTCATCCCTTTATTTCTTGATTTTACTGCCGCCTTTCATCAAATTGTACCGGACTCACAACCTGCTCCACACAATTTGCAACCGACATACTCATCTCTGTCAACGGATTTTGGAGTCCACCAACCAAGATGGTGAGGCTGGAGCATCCACCGATGGGGTCGAGTTCAATGTCAGGTTCCACCAGGTGAGGGCACTTCACAATGATTCATTCAGTGGTGGGGAGATCAAAGTCTACACATGCGCCGTCGCCTTTGCTCTGTTTGCTGTTACCGCTTTTCAACTCTATGCCTGTAAGTATGTGGTGTGCAACTGA

mRNA sequence

ATGGAGCTTGAAGCGCTGAAGAGGGATTTGGAGTGTCTTGCTGAAAATCAGCAACAAAGGGTGCGTTACTACGAGAGTAGAGCCAATTACACGACTCTGGGCTACCTGGCCTGGCTGCGCTTCTTCTACTTTGCTGTCTCCTCTAATTCCTCCTCTCTCCACTGTGTTCATTGGCCCATGGTTTTGGGTTTGAGTCTTTCCTCTTCATCCCTTTATTTCTTGATTTTACTGCCGCCTTTCATCAAATTGTACCGGACTCACAACCTGCTCCACACAATTTGCAACCGACATACTCATCTCTGTCAACGGATTTTGGAGTCCACCAACCAAGATGGTGAGGCTGGAGCATCCACCGATGGGGTCGAGTTCAATGTCAGGTTCCACCAGGTGAGGGCACTTCACAATGATTCATTCAGTGGTGGGGAGATCAAAGTCTACACATGCGCCGTCGCCTTTGCTCTGTTTGCTGTTACCGCTTTTCAACTCTATGCCTGTAAGTATGTGGTGTGCAACTGA

Coding sequence (CDS)

ATGGAGCTTGAAGCGCTGAAGAGGGATTTGGAGTGTCTTGCTGAAAATCAGCAACAAAGGGTGCGTTACTACGAGAGTAGAGCCAATTACACGACTCTGGGCTACCTGGCCTGGCTGCGCTTCTTCTACTTTGCTGTCTCCTCTAATTCCTCCTCTCTCCACTGTGTTCATTGGCCCATGGTTTTGGGTTTGAGTCTTTCCTCTTCATCCCTTTATTTCTTGATTTTACTGCCGCCTTTCATCAAATTGTACCGGACTCACAACCTGCTCCACACAATTTGCAACCGACATACTCATCTCTGTCAACGGATTTTGGAGTCCACCAACCAAGATGGTGAGGCTGGAGCATCCACCGATGGGGTCGAGTTCAATGTCAGGTTCCACCAGGTGAGGGCACTTCACAATGATTCATTCAGTGGTGGGGAGATCAAAGTCTACACATGCGCCGTCGCCTTTGCTCTGTTTGCTGTTACCGCTTTTCAACTCTATGCCTGTAAGTATGTGGTGTGCAACTGA

Protein sequence

MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPMVLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDGVEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYACKYVVCN

Homology

[Close]

BLAST of Csor.00g224520.m01 vs. NCBI nr
Match: KAG6605757.1 (hypothetical protein SDJN03_03074, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340 bits (871), Expect = 1.24e-117
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60
           MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM
Sbjct: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60

Query: 61  VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG 120
           VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG
Sbjct: 61  VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG 120

Query: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYACKYVVCN 171
           VEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYACKYVVCN
Sbjct: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYACKYVVCN 171

[Close]

BLAST of Csor.00g224520.m01 vs. NCBI nr
Match: XP_022957795.1 (uncharacterized protein LOC111459230 isoform X1 [Cucurbita moschata])

HSP 1 Score: 302 bits (773), Expect = 1.08e-102
Identity = 152/171 (88.89%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60
           MELE ++RDLE LAE QQQRVRYYESRA YTTLGYLAWLRFFYFAVSSNSS+LHCVHWPM
Sbjct: 1   MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 60

Query: 61  VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG 120
           V GLSLS SSLY LILLPPFIKLYRTHNLLHTICN+HTHLCQRILE+TNQDGEAGAST G
Sbjct: 61  VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDGEAGASTHG 120

Query: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYACKYVVCN 171
           VEFNVRFHQVRALHNDSFSGGEIKVYTCA+AFAL AVTAF+L ACKYV+C 
Sbjct: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAIAFALLAVTAFELGACKYVLCK 171

[Close]

BLAST of Csor.00g224520.m01 vs. NCBI nr
Match: KAG6605756.1 (hypothetical protein SDJN03_03073, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302 bits (773), Expect = 2.45e-100
Identity = 153/171 (89.47%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60
           MELE ++RDLE LAE QQQRVRYYESRA YTTLGYLAWLRFFYFAVSSNSS+LHCVHWPM
Sbjct: 161 MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 220

Query: 61  VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG 120
           V GLSLS SSLY LILLPPFIKLYRTHNLLHTICN+HTHLCQRILE+TNQDGEAGAST G
Sbjct: 221 VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDGEAGASTHG 280

Query: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYACKYVVCN 171
           VEFN RFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAF+LYA KYV+C 
Sbjct: 281 VEFNFRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFELYAGKYVLCK 331

[Close]

BLAST of Csor.00g224520.m01 vs. NCBI nr
Match: XP_023533522.1 (uncharacterized protein LOC111795372 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274 bits (700), Expect = 3.40e-91
Identity = 141/151 (93.38%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSS-LHCVHWP 60
           MELE ++RDLE LAE QQQRVRYYESRA YTTLGYLAWLRFFY AVSSNSSS LHCVHW 
Sbjct: 8   MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYSAVSSNSSSTLHCVHWA 67

Query: 61  MVLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTD 120
           MVLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTD
Sbjct: 68  MVLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTD 127

Query: 121 GVEFNVRFHQVRALHNDSFSGGEIKVYTCAV 150
           GVEFNVRFHQVRALHNDSFSGGEIKVYTC+V
Sbjct: 128 GVEFNVRFHQVRALHNDSFSGGEIKVYTCSV 158

[Close]

BLAST of Csor.00g224520.m01 vs. NCBI nr
Match: XP_022957796.1 (uncharacterized protein LOC111459230 isoform X2 [Cucurbita moschata])

HSP 1 Score: 272 bits (696), Expect = 4.64e-91
Identity = 136/150 (90.67%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60
           MELE ++RDLE LAE QQQRVRYYESRA YTTLGYLAWLRFFYFAVSSNSS+LHCVHWPM
Sbjct: 1   MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 60

Query: 61  VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG 120
           V GLSLS SSLY LILLPPFIKLYRTHNLLHTICN+HTHLCQRILE+TNQDGEAGAST G
Sbjct: 61  VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDGEAGASTHG 120

Query: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAV 150
           VEFNVRFHQVRALHNDSFSGGEIKVYTC+V
Sbjct: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCSV 150

[Close]

BLAST of Csor.00g224520.m01 vs. ExPASy TrEMBL
Match: A0A6J1H1I5 (uncharacterized protein LOC111459230 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459230 PE=4 SV=1)

HSP 1 Score: 302 bits (773), Expect = 5.25e-103
Identity = 152/171 (88.89%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60
           MELE ++RDLE LAE QQQRVRYYESRA YTTLGYLAWLRFFYFAVSSNSS+LHCVHWPM
Sbjct: 1   MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 60

Query: 61  VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG 120
           V GLSLS SSLY LILLPPFIKLYRTHNLLHTICN+HTHLCQRILE+TNQDGEAGAST G
Sbjct: 61  VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDGEAGASTHG 120

Query: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYACKYVVCN 171
           VEFNVRFHQVRALHNDSFSGGEIKVYTCA+AFAL AVTAF+L ACKYV+C 
Sbjct: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAIAFALLAVTAFELGACKYVLCK 171

[Close]

BLAST of Csor.00g224520.m01 vs. ExPASy TrEMBL
Match: A0A6J1H082 (uncharacterized protein LOC111459230 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459230 PE=4 SV=1)

HSP 1 Score: 272 bits (696), Expect = 2.25e-91
Identity = 136/150 (90.67%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60
           MELE ++RDLE LAE QQQRVRYYESRA YTTLGYLAWLRFFYFAVSSNSS+LHCVHWPM
Sbjct: 1   MELEEVRRDLEYLAEKQQQRVRYYESRAIYTTLGYLAWLRFFYFAVSSNSSTLHCVHWPM 60

Query: 61  VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG 120
           V GLSLS SSLY LILLPPFIKLYRTHNLLHTICN+HTHLCQRILE+TNQDGEAGAST G
Sbjct: 61  VFGLSLSCSSLYLLILLPPFIKLYRTHNLLHTICNQHTHLCQRILEATNQDGEAGASTHG 120

Query: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAV 150
           VEFNVRFHQVRALHNDSFSGGEIKVYTC+V
Sbjct: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCSV 150

[Close]

BLAST of Csor.00g224520.m01 vs. ExPASy TrEMBL
Match: A0A6J1H1A1 (uncharacterized protein LOC111459231 OS=Cucurbita moschata OX=3662 GN=LOC111459231 PE=4 SV=1)

HSP 1 Score: 241 bits (616), Expect = 3.34e-79
Identity = 126/164 (76.83%), Postives = 140/164 (85.37%), Query Frame = 0


Query: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60
           MEL+ LKRD E LAEN+QQ+VRYY+SR NYTT+ YLAWLRFFYFA+SS SS+LHCVHWPM
Sbjct: 1   MELQWLKRDFETLAENKQQKVRYYDSRVNYTTMAYLAWLRFFYFALSSASSTLHCVHWPM 60

Query: 61  VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG 120
           VLGLSLSSS LYFLILL PFIKLYRTHNLL TIC  HT +CQRILE+ NQD EAGAS DG
Sbjct: 61  VLGLSLSSSFLYFLILLQPFIKLYRTHNLLDTICKEHTLICQRILEAMNQDAEAGASNDG 120

Query: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLYA 164
           V F+    QVRAL +DSF GGE+KVY CA+AFAL AVTAF+LYA
Sbjct: 121 VRFDFGL-QVRALSDDSFCGGEMKVYGCAIAFALLAVTAFELYA 163

[Close]

BLAST of Csor.00g224520.m01 vs. ExPASy TrEMBL
Match: A0A6J1H053 (uncharacterized protein LOC111459230 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111459230 PE=4 SV=1)

HSP 1 Score: 221 bits (564), Expect = 2.41e-71
Identity = 119/163 (73.01%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 1   MELEALKRDLECLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVHWPM 60
           M+L+ ++RD E LAEN    VRYY+SRA  TTL YL+WLRFFYFAVS  SS+LHC HWPM
Sbjct: 1   MKLQWVRRDFESLAEN----VRYYKSRATCTTLAYLSWLRFFYFAVSPASSTLHCFHWPM 60

Query: 61  VLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDGEAGASTDG 120
           VL LSLSSS LYFLILLP FIKLYR HNLLHTICN+HTH+CQRI E+ NQ+G+AGA  DG
Sbjct: 61  VLDLSLSSSFLYFLILLPAFIKLYRIHNLLHTICNQHTHICQRIWEAMNQNGQAGALNDG 120

Query: 121 VEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLY 163
           V F+    QVRAL +DSFSGGEIKVY CA+AFALFAVTAF+LY
Sbjct: 121 VGFDFGV-QVRALTDDSFSGGEIKVYGCAIAFALFAVTAFELY 158

[Close]

BLAST of Csor.00g224520.m01 vs. ExPASy TrEMBL
Match: A0A6J1DTV6 (uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023951 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 3.74e-37
Identity = 84/173 (48.55%), Postives = 107/173 (61.85%), Query Frame = 0


Query: 1   MELEALKRDLE---CLAENQQQRVRYYESRANYTTLGYLAWLRFFYFAVSSNSSSLHCVH 60
           M+L  LKRD E    LAE Q+  +R+YESRA   T+GYL W RFF+FA+S  SS L C+ 
Sbjct: 1   MKLRVLKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSPLKCID 60

Query: 61  WPMVLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQDG----- 120
           W +VLGLSL  S +YFL+ L     LYRT N +  IC   + +CQ+IL++ NQD      
Sbjct: 61  WRVVLGLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQDDGGSAM 120

Query: 121 EAGASTDGVEFNVRFHQVRALHND-SFSGGEIKVYTCAVAFALFAVTAFQLYA 164
           EAG  +DGV FN  FH    L+ D SF   + KVY  A+  +L AVTA +LYA
Sbjct: 121 EAGDLSDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELYA 173

The following BLAST results are available for this feature:

BLAST of Csor.00g224520.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g224520.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605757.1	1.24e-117	100.00	hypothetical protein SDJN03_03074, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022957795.1	1.08e-102	88.89	uncharacterized protein LOC111459230 isoform X1 [Cucurbita moschata]	[more]
KAG6605756.1	2.45e-100	89.47	hypothetical protein SDJN03_03073, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023533522.1	3.40e-91	93.38	uncharacterized protein LOC111795372 [Cucurbita pepo subsp. pepo]	[more]
XP_022957796.1	4.64e-91	90.67	uncharacterized protein LOC111459230 isoform X2 [Cucurbita moschata]	[more]

BLAST of Csor.00g224520.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H1I5	5.25e-103	88.89	uncharacterized protein LOC111459230 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1H082	2.25e-91	90.67	uncharacterized protein LOC111459230 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1H1A1	3.34e-79	76.83	uncharacterized protein LOC111459231 OS=Cucurbita moschata OX=3662 GN=LOC1114592...	[more]
A0A6J1H053	2.41e-71	73.01	uncharacterized protein LOC111459230 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1DTV6	3.74e-37	48.55	uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Csor.00g224520.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33287:SF8	SUBFAMILY NOT NAMED	coord: 2..171
None	No IPR available	PANTHER	PTHR33287	OS03G0453550 PROTEIN	coord: 2..171

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g224520	Csor.00g224520	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g224520.m01.CDS01	Csor.00g224520.m01.CDS01	CDS

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g224520.m01.single01	Csor.00g224520.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g224520.m01.start_codon01	Csor.00g224520.m01.start_codon01	start_codon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g224520.m01.stop_codon01	Csor.00g224520.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g224520.m01	Csor.00g224520.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane