Csor.00g218180.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g218180.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr17: 4404634 .. 4404989 (-)
Sequence length	282
RNA-Seq Expression	Csor.00g218180.m01
Synteny	Csor.00g218180.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCTATAGCTTCGTCAACTTTGGTTGGCTTCAAGAAAAGAAGCGGTTCTCCCCATGTTCTGGATTATTTCTCTTCGCCAGCCAGTGCTGATGACAAAGTCTGCAGAGTCAAAAGTTCTTGGAAGTGAGGCTTTATTAAAGGGCTTTGATGGGGGAGGCTTTTTAGAGTGCAGTCTATGATTATGACGTGCTATTCAGTCTCAATGAAATTTGCCAAAAGGAGTCCAATTCGAGCCATCTTTTGTTGGATGGATTTGGCACCGAGGATCTTCAAAAAGTGGGAATTTATACTAGGCGGGACGGAAGGGCACTGAAAGAGAAAATCGAACATCTTTACGATTTCCTCCTTTAA

mRNA sequence

ATGAGGGCTATAGCTTCGTCAACTTTGGTTGGCTTCAAGAAAAGAAGCGGTTCTCCCCATGTTCTGGATTATTTCTCTTCGCCAGCCAGTGCTGATGACAAAGTCTGCAGAGTCAAAAGTTCTTGGAATCTCAATGAAATTTGCCAAAAGGAGTCCAATTCGAGCCATCTTTTGTTGGATGGATTTGGCACCGAGGATCTTCAAAAAGTGGGAATTTATACTAGGCGGGACGGAAGGGCACTGAAAGAGAAAATCGAACATCTTTACGATTTCCTCCTTTAA

Coding sequence (CDS)

ATGAGGGCTATAGCTTCGTCAACTTTGGTTGGCTTCAAGAAAAGAAGCGGTTCTCCCCATGTTCTGGATTATTTCTCTTCGCCAGCCAGTGCTGATGACAAAGTCTGCAGAGTCAAAAGTTCTTGGAATCTCAATGAAATTTGCCAAAAGGAGTCCAATTCGAGCCATCTTTTGTTGGATGGATTTGGCACCGAGGATCTTCAAAAAGTGGGAATTTATACTAGGCGGGACGGAAGGGCACTGAAAGAGAAAATCGAACATCTTTACGATTTCCTCCTTTAA

Protein sequence

MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLDGFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL

Homology

[Close]

BLAST of Csor.00g218180.m01 vs. NCBI nr
Match: KAG6575281.1 (hypothetical protein SDJN03_25920, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (485), Expect = 2.79e-61
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD 60
          MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD
Sbjct: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD 60

Query: 61 GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL 93
          GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL
Sbjct: 61 GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL 93

[Close]

BLAST of Csor.00g218180.m01 vs. NCBI nr
Match: KAG6585885.1 (hypothetical protein SDJN03_18618, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179 bits (454), Expect = 1.50e-56
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD 60
          MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKV RVKSSWNLNEICQKESNSSHLLLD
Sbjct: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVRRVKSSWNLNEICQKESNSSHLLLD 60

Query: 61 GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL 93
          GFGTEDL+KVGIYT RDGRALKEKIEHLYD LL
Sbjct: 61 GFGTEDLKKVGIYTGRDGRALKEKIEHLYDCLL 93

[Close]

BLAST of Csor.00g218180.m01 vs. NCBI nr
Match: KAG6585942.1 (hypothetical protein SDJN03_18675, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175 bits (444), Expect = 5.03e-55
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD 60
          M+AIASST VGFKKRSGSPHVLDYFS PASADDKV RVKSSWNLNEICQKESNSSHLLLD
Sbjct: 1  MKAIASSTFVGFKKRSGSPHVLDYFSWPASADDKVRRVKSSWNLNEICQKESNSSHLLLD 60

Query: 61 GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL 93
          GFGTEDLQKVGIYT RDGRALKEKIEHLYD LL
Sbjct: 61 GFGTEDLQKVGIYTGRDGRALKEKIEHLYDCLL 93

The following BLAST results are available for this feature:

BLAST of Csor.00g218180.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g218180.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575281.1	2.79e-61	100.00	hypothetical protein SDJN03_25920, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6585885.1	1.50e-56	95.70	hypothetical protein SDJN03_18618, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6585942.1	5.03e-55	93.55	hypothetical protein SDJN03_18675, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g218180.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g218180.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g218180	Csor.00g218180	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g218180.m01.CDS01	Csor.00g218180.m01.CDS01	CDS
Csor.00g218180.m01.CDS02	Csor.00g218180.m01.CDS02	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g218180.m01.stop_codon01	Csor.00g218180.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g218180.m01.terminal01	Csor.00g218180.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g218180.m01.intron01	Csor.00g218180.m01.intron01	intron

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g218180.m01.initial01	Csor.00g218180.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g218180.m01.start_codon01	Csor.00g218180.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g218180.m01	Csor.00g218180.m01-protein	polypeptide