Csor.00g218180 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g218180
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr17: 4404634 .. 4404989 (-)
RNA-Seq ExpressionCsor.00g218180
SyntenyCsor.00g218180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGCTATAGCTTCGTCAACTTTGGTTGGCTTCAAGAAAAGAAGCGGTTCTCCCCATGTTCTGGATTATTTCTCTTCGCCAGCCAGTGCTGATGACAAAGTCTGCAGAGTCAAAAGTTCTTGGAAGTGAGGCTTTATTAAAGGGCTTTGATGGGGGAGGCTTTTTAGAGTGCAGTCTATGATTATGACGTGCTATTCAGTCTCAATGAAATTTGCCAAAAGGAGTCCAATTCGAGCCATCTTTTGTTGGATGGATTTGGCACCGAGGATCTTCAAAAAGTGGGAATTTATACTAGGCGGGACGGAAGGGCACTGAAAGAGAAAATCGAACATCTTTACGATTTCCTCCTTTAA

mRNA sequence

ATGAGGGCTATAGCTTCGTCAACTTTGGTTGGCTTCAAGAAAAGAAGCGGTTCTCCCCATGTTCTGGATTATTTCTCTTCGCCAGCCAGTGCTGATGACAAAGTCTGCAGAGTCAAAAGTTCTTGGAATCTCAATGAAATTTGCCAAAAGGAGTCCAATTCGAGCCATCTTTTGTTGGATGGATTTGGCACCGAGGATCTTCAAAAAGTGGGAATTTATACTAGGCGGGACGGAAGGGCACTGAAAGAGAAAATCGAACATCTTTACGATTTCCTCCTTTAA

Coding sequence (CDS)

ATGAGGGCTATAGCTTCGTCAACTTTGGTTGGCTTCAAGAAAAGAAGCGGTTCTCCCCATGTTCTGGATTATTTCTCTTCGCCAGCCAGTGCTGATGACAAAGTCTGCAGAGTCAAAAGTTCTTGGAATCTCAATGAAATTTGCCAAAAGGAGTCCAATTCGAGCCATCTTTTGTTGGATGGATTTGGCACCGAGGATCTTCAAAAAGTGGGAATTTATACTAGGCGGGACGGAAGGGCACTGAAAGAGAAAATCGAACATCTTTACGATTTCCTCCTTTAA

Protein sequence

MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLDGFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL
Homology
[Close]
BLAST of Csor.00g218180 vs. NCBI nr
Match: KAG6575281.1 (hypothetical protein SDJN03_25920, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (485), Expect = 2.79e-61
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD 60
          MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD
Sbjct: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD 60

Query: 61 GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL 93
          GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL
Sbjct: 61 GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL 93

[Close]
BLAST of Csor.00g218180 vs. NCBI nr
Match: KAG6585885.1 (hypothetical protein SDJN03_18618, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179 bits (454), Expect = 1.50e-56
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD 60
          MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKV RVKSSWNLNEICQKESNSSHLLLD
Sbjct: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVRRVKSSWNLNEICQKESNSSHLLLD 60

Query: 61 GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL 93
          GFGTEDL+KVGIYT RDGRALKEKIEHLYD LL
Sbjct: 61 GFGTEDLKKVGIYTGRDGRALKEKIEHLYDCLL 93

[Close]
BLAST of Csor.00g218180 vs. NCBI nr
Match: KAG6585942.1 (hypothetical protein SDJN03_18675, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175 bits (444), Expect = 5.03e-55
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 1  MRAIASSTLVGFKKRSGSPHVLDYFSSPASADDKVCRVKSSWNLNEICQKESNSSHLLLD 60
          M+AIASST VGFKKRSGSPHVLDYFS PASADDKV RVKSSWNLNEICQKESNSSHLLLD
Sbjct: 1  MKAIASSTFVGFKKRSGSPHVLDYFSWPASADDKVRRVKSSWNLNEICQKESNSSHLLLD 60

Query: 61 GFGTEDLQKVGIYTRRDGRALKEKIEHLYDFLL 93
          GFGTEDLQKVGIYT RDGRALKEKIEHLYD LL
Sbjct: 61 GFGTEDLQKVGIYTGRDGRALKEKIEHLYDCLL 93

The following BLAST results are available for this feature:
BLAST of Csor.00g218180 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g218180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575281.12.79e-61100.00hypothetical protein SDJN03_25920, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585885.11.50e-5695.70hypothetical protein SDJN03_18618, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585942.15.03e-5593.55hypothetical protein SDJN03_18675, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g218180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g218180 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g218180.m01Csor.00g218180.m01mRNA