Csor.00g211690.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g211690.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	photosynthetic NDH subunit of subcomplex B 4, chloroplastic
Location	Csor_Chr11: 887283 .. 888266 (-)
Sequence length	540
RNA-Seq Expression	Csor.00g211690.m01
Synteny	Csor.00g211690.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGGCTATCGCAGGCTTCAGCATTATCAAACAAACCCTGTATAGCTCCTCTAATCTCCACCCACACAAATCGACCCACATCCCATTTTCGACACTGGTATGTATGCTAATCCTTTATCCTTTCGTCTCAAAACTCTTATCCATTTTAATGTGCTGGATTTGACCACTTTATTACAATTCATGCAGCTTCCAAACTCCGGAGTTTTCAGCCATCGACAACTTGTAAGTAGCTCTTGATTCTCACATTCAATGGTTAGGAAAAACGGGTTTTCTTTCGCCTAATATTTGTTAGTTCATTCATATCCTTTTGTGCAATAAATAGACTGAAGGTTCAAAGCGCCAAAGAGGGTCTCTAGGGAGAGTAAATGCTTTCCCAGATTGGCCACTTATGGCAGTTCTAGTTGATCACTTGGACGGCCAAAGAGACCTTGTTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATCAAGAATGTCTGTAAGTGTTTGATTATACTGACATTTCTATAGATCGCATGTAAAAATTAGTAATATTGAAAACTAACCTTCATTTTAACCATTGGTTAATGTCAGATAGTCTTTACATCATGTTCACTTGTTGGGGATGTCTGTTCTTTGGTTCCATGAAGGTAACCATATCTTTAGTTTCATTCTGCTTGGGTTACGTAAAACAAAACTTTTGTCTCAGGCCTTCAAGGTTATGTTTTTAGGATCCATACTATGATTCAGAGGTGTACAGAAAAGATGGAGGCGATGGAACAGGACATTGGGTCTATGAGAAGGTGAATTATCCAACTCTTGAGCAATGACACCATAATTTTCACTCAATTATTATGACGAAGTTTTTATCTGATATTGCAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGAGCTATGGAGGGAGGAGCTGATTGAGGAGATCGAACAGAAGGTTGGAGGACTTCGAGAATTGGAAGAAGCTGGAAAGAAATAA

mRNA sequence

ATGGCTAAGGCTATCGCAGGCTTCAGCATTATCAAACAAACCCTGTATAGCTCCTCTAATCTCCACCCACACAAATCGACCCACATCCCATTTTCGACACTGCTTCCAAACTCCGGAGTTTTCAGCCATCGACAACTTACTGAAGGTTCAAAGCGCCAAAGAGGGTCTCTAGGGAGAGTAAATGCTTTCCCAGATTGGCCACTTATGGCAGTTCTAGTTGATCACTTGGACGGCCAAAGAGACCTTGTTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATCAAGAATGTCTATAGTCTTTACATCATGTTCACTTGTTGGGGATGTCTGTTCTTTGGTTCCATGAAGGATCCATACTATGATTCAGAGGTGTACAGAAAAGATGGAGGCGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGAGCTATGGAGGGAGGAGCTGATTGAGGAGATCGAACAGAAGGTTGGAGGACTTCGAGAATTGGAAGAAGCTGGAAAGAAATAA

Coding sequence (CDS)

ATGGCTAAGGCTATCGCAGGCTTCAGCATTATCAAACAAACCCTGTATAGCTCCTCTAATCTCCACCCACACAAATCGACCCACATCCCATTTTCGACACTGCTTCCAAACTCCGGAGTTTTCAGCCATCGACAACTTACTGAAGGTTCAAAGCGCCAAAGAGGGTCTCTAGGGAGAGTAAATGCTTTCCCAGATTGGCCACTTATGGCAGTTCTAGTTGATCACTTGGACGGCCAAAGAGACCTTGTTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATCAAGAATGTCTATAGTCTTTACATCATGTTCACTTGTTGGGGATGTCTGTTCTTTGGTTCCATGAAGGATCCATACTATGATTCAGAGGTGTACAGAAAAGATGGAGGCGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGAGCTATGGAGGGAGGAGCTGATTGAGGAGATCGAACAGAAGGTTGGAGGACTTCGAGAATTGGAAGAAGCTGGAAAGAAATAA

Protein sequence

MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRVNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK

Homology

[Close]

BLAST of Csor.00g211690.m01 vs. ExPASy Swiss-Prot
Match: Q8RXS1 (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 9.9e-52
Identity = 107/170 (62.94%), Postives = 124/170 (72.94%), Query Frame = 0


Query: 14  TLYSSSNLH-PHKSTHIPFSTLLPNSGVFSHRQLTEGSKR--QRGSLGRVNAFP-DWPLM 73
           T ++ +NLH P    H P     PN G +  + + E  +R   RGSL    A P D PLM
Sbjct: 6   TSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSKNVNEKRERNLMRGSLCVRKALPHDLPLM 65

Query: 74  AVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRK 133
           AV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR 
Sbjct: 66  AVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYRG 125

Query: 134 DGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 180
           DGGDGTG+WVYE QEDIEE ARAELWREELIEEIEQKVGGLRELEEA  K
Sbjct: 126 DGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 175

[Close]

BLAST of Csor.00g211690.m01 vs. NCBI nr
Match: XP_022933404.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata] >XP_023531595.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo] >KAG6587547.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021522.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364 bits (935), Expect = 3.95e-127
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60
           MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60

Query: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]

BLAST of Csor.00g211690.m01 vs. NCBI nr
Match: XP_023531594.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352 bits (904), Expect = 2.19e-122
Identity = 175/180 (97.22%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTL-LPNSGVFSHRQLTEGSKRQRGSLGR 60
           MAKAIAGFSIIKQTLYSSSNLHPHKSTHIP   + LPNSGVFSHRQLTEGSKRQRGSLGR
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPLQFMQLPNSGVFSHRQLTEGSKRQRGSLGR 60

Query: 61  VNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
           VNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179
           PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 180

[Close]

BLAST of Csor.00g211690.m01 vs. NCBI nr
Match: XP_022972961.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 341 bits (875), Expect = 1.49e-117
Identity = 169/179 (94.41%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60
           MAKAIAGF+IIKQTLYSSSNLHPHKS HIP+STLLP SG FS RQL E SKRQ GSLGRV
Sbjct: 29  MAKAIAGFTIIKQTLYSSSNLHPHKSAHIPYSTLLPKSGAFSQRQLPECSKRQIGSLGRV 88

Query: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDW LMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 89  NAFPDWTLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 148

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 149 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 207

[Close]

BLAST of Csor.00g211690.m01 vs. NCBI nr
Match: XP_023516363.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315 bits (807), Expect = 1.25e-107
Identity = 156/179 (87.15%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60
           MAKAIAGFS+I  TL+SS NLHPHKST IP   L  NSG+F H+QL E +KRQRGS+G+V
Sbjct: 1   MAKAIAGFSMINPTLHSS-NLHPHKSTLIPHPKLPSNSGIFGHQQLIEDTKRQRGSMGKV 60

Query: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDW LMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Csor.00g211690.m01 vs. NCBI nr
Match: XP_022987205.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 313 bits (802), Expect = 7.25e-107
Identity = 155/179 (86.59%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60
           MAKAIAGFS+I  TL+SS NLHPHK+T IP   L  NSG+F H+QL E +KRQRGS+G+V
Sbjct: 1   MAKAIAGFSMINPTLHSS-NLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKV 60

Query: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDW LMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Csor.00g211690.m01 vs. ExPASy TrEMBL
Match: A0A6J1EZP2 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111440832 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 1.91e-127
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60
           MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60

Query: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]

BLAST of Csor.00g211690.m01 vs. ExPASy TrEMBL
Match: A0A6J1I7D8 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471485 PE=4 SV=1)

HSP 1 Score: 341 bits (875), Expect = 7.23e-118
Identity = 169/179 (94.41%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60
           MAKAIAGF+IIKQTLYSSSNLHPHKS HIP+STLLP SG FS RQL E SKRQ GSLGRV
Sbjct: 29  MAKAIAGFTIIKQTLYSSSNLHPHKSAHIPYSTLLPKSGAFSQRQLPECSKRQIGSLGRV 88

Query: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDW LMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 89  NAFPDWTLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 148

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 149 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 207

[Close]

BLAST of Csor.00g211690.m01 vs. ExPASy TrEMBL
Match: A0A6J1JG67 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484826 PE=4 SV=1)

HSP 1 Score: 313 bits (802), Expect = 3.51e-107
Identity = 155/179 (86.59%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60
           MAKAIAGFS+I  TL+SS NLHPHK+T IP   L  NSG+F H+QL E +KRQRGS+G+V
Sbjct: 1   MAKAIAGFSMINPTLHSS-NLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKV 60

Query: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDW LMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Csor.00g211690.m01 vs. ExPASy TrEMBL
Match: A0A6J1E2I6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429992 PE=4 SV=1)

HSP 1 Score: 312 bits (799), Expect = 1.01e-106
Identity = 154/179 (86.03%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60
           MAKAIAGFS++  TL+SS NLHPHKST IP   L  NSG+F H+QL E +KRQRGS+G+V
Sbjct: 1   MAKAIAGFSMVNPTLHSS-NLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKV 60

Query: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDW LMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEE ARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Csor.00g211690.m01 vs. ExPASy TrEMBL
Match: A0A6J1BYE8 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006874 PE=4 SV=1)

HSP 1 Score: 311 bits (798), Expect = 2.33e-106
Identity = 159/182 (87.36%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGS---KRQRGSL 60
           MAKAIAGFSIIK  L ++SNLH HKST IP+S LL NSGVFSH QL E +   KR+RGSL
Sbjct: 12  MAKAIAGFSIIKPHL-NTSNLHQHKSTIIPYSKLLFNSGVFSHPQLHESTTTKKRERGSL 71

Query: 61  GRVNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSM 120
           G+VNAFPDW LMAVLVDH+DGQRDL+THKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSM
Sbjct: 72  GKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSM 131

Query: 121 KDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAG 179
           KDPYYDSEVYRKDGGDGTGHWVYE QEDIEEAARAELWREELIEEIEQKVGGLRELEEAG
Sbjct: 132 KDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAG 191

[Close]

BLAST of Csor.00g211690.m01 vs. TAIR 10
Match: AT1G18730.1 (NDH dependent flow 6 )

HSP 1 Score: 204.5 bits (519), Expect = 7.0e-53
Identity = 107/170 (62.94%), Postives = 124/170 (72.94%), Query Frame = 0


Query: 14  TLYSSSNLH-PHKSTHIPFSTLLPNSGVFSHRQLTEGSKR--QRGSLGRVNAFP-DWPLM 73
           T ++ +NLH P    H P     PN G +  + + E  +R   RGSL    A P D PLM
Sbjct: 6   TSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSKNVNEKRERNLMRGSLCVRKALPHDLPLM 65

Query: 74  AVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRK 133
           AV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR 
Sbjct: 66  AVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYRG 125

Query: 134 DGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 180
           DGGDGTG+WVYE QEDIEE ARAELWREELIEEIEQKVGGLRELEEA  K
Sbjct: 126 DGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 175

[Close]

BLAST of Csor.00g211690.m01 vs. TAIR 10
Match: AT1G18730.3 (NDH dependent flow 6 )

HSP 1 Score: 199.1 bits (505), Expect = 2.9e-51
Identity = 106/169 (62.72%), Postives = 121/169 (71.60%), Query Frame = 0


Query: 14  TLYSSSNLH-PHKSTHIPFSTLLPNSGVF-SHRQLTEGSKRQRGSLGRVNAFP-DWPLMA 73
           T ++ +NLH P    H P     PN G + S+          RGSL    A P D PLMA
Sbjct: 6   TSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNLMRGSLCVRKALPHDLPLMA 65

Query: 74  VLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKD 133
           V+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR D
Sbjct: 66  VMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYRGD 125

Query: 134 GGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 180
           GGDGTG+WVYE QEDIEE ARAELWREELIEEIEQKVGGLRELEEA  K
Sbjct: 126 GGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 174

[Close]

BLAST of Csor.00g211690.m01 vs. TAIR 10
Match: AT1G18730.2 (NDH dependent flow 6 )

HSP 1 Score: 141.4 bits (355), Expect = 7.3e-34
Identity = 72/131 (54.96%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 14  TLYSSSNLH-PHKSTHIPFSTLLPNSGVF-SHRQLTEGSKRQRGSLGRVNAFP-DWPLMA 73
           T ++ +NLH P    H P     PN G + S+          RGSL    A P D PLMA
Sbjct: 6   TSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNLMRGSLCVRKALPHDLPLMA 65

Query: 74  VLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKD 133
           V+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR D
Sbjct: 66  VMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYRGD 125

Query: 134 GGDGTGHWVYE 142
           GGDGTG+WVYE
Sbjct: 126 GGDGTGYWVYE 136

[Close]

BLAST of Csor.00g211690.m01 vs. TAIR 10
Match: AT1G18730.4 (NDH dependent flow 6 )

HSP 1 Score: 141.4 bits (355), Expect = 7.3e-34
Identity = 72/131 (54.96%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 14  TLYSSSNLH-PHKSTHIPFSTLLPNSGVF-SHRQLTEGSKRQRGSLGRVNAFP-DWPLMA 73
           T ++ +NLH P    H P     PN G + S+          RGSL    A P D PLMA
Sbjct: 6   TSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNLMRGSLCVRKALPHDLPLMA 65

Query: 74  VLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKD 133
           V+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP+YDSE YR D
Sbjct: 66  VMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYRGD 125

Query: 134 GGDGTGHWVYE 142
           GGDGTG+WVYE
Sbjct: 126 GGDGTGYWVYE 136

The following BLAST results are available for this feature:

BLAST of Csor.00g211690.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXS1	9.9e-52	62.94	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Csor.00g211690.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933404.1	3.95e-127	100.00	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata]...	[more]
XP_023531594.1	2.19e-122	97.22	photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X1 [Cucurbit...	[more]
XP_022972961.1	1.49e-117	94.41	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi...	[more]
XP_023516363.1	1.25e-107	87.15	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo...	[more]
XP_022987205.1	7.25e-107	86.59	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi...	[more]

BLAST of Csor.00g211690.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZP2	1.91e-127	100.00	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1I7D8	7.23e-118	94.41	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma...	[more]
A0A6J1JG67	3.51e-107	86.59	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma...	[more]
A0A6J1E2I6	1.01e-106	86.03	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita mo...	[more]
A0A6J1BYE8	2.33e-106	87.36	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Momordica charant...	[more]

BLAST of Csor.00g211690.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18730.1	7.0e-53	62.94	NDH dependent flow 6	[more]
AT1G18730.3	2.9e-51	62.72	NDH dependent flow 6	[more]
AT1G18730.2	7.3e-34	54.96	NDH dependent flow 6	[more]
AT1G18730.4	7.3e-34	54.96	NDH dependent flow 6	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 156..176
IPR034570	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic	PANTHER	PTHR36315	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTIC	coord: 1..179

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g211690	Csor.00g211690	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g211690.m01.CDS06	Csor.00g211690.m01.CDS06	CDS
Csor.00g211690.m01.CDS05	Csor.00g211690.m01.CDS05	CDS
Csor.00g211690.m01.CDS04	Csor.00g211690.m01.CDS04	CDS
Csor.00g211690.m01.CDS03	Csor.00g211690.m01.CDS03	CDS
Csor.00g211690.m01.CDS02	Csor.00g211690.m01.CDS02	CDS
Csor.00g211690.m01.CDS01	Csor.00g211690.m01.CDS01	CDS

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g211690.m01.terminal01	Csor.00g211690.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g211690.m01.stop_codon01	Csor.00g211690.m01.stop_codon01	stop_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g211690.m01.intron05	Csor.00g211690.m01.intron05	intron
Csor.00g211690.m01.intron04	Csor.00g211690.m01.intron04	intron
Csor.00g211690.m01.intron03	Csor.00g211690.m01.intron03	intron
Csor.00g211690.m01.intron02	Csor.00g211690.m01.intron02	intron
Csor.00g211690.m01.intron01	Csor.00g211690.m01.intron01	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g211690.m01.internal04	Csor.00g211690.m01.internal04	internal
Csor.00g211690.m01.internal03	Csor.00g211690.m01.internal03	internal
Csor.00g211690.m01.internal02	Csor.00g211690.m01.internal02	internal
Csor.00g211690.m01.internal01	Csor.00g211690.m01.internal01	internal

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g211690.m01.initial01	Csor.00g211690.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g211690.m01.start_codon01	Csor.00g211690.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g211690.m01	Csor.00g211690.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)