Csor.00g209350.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g209350.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr05: 8658445 .. 8658885 (-)
Sequence length	441
RNA-Seq Expression	Csor.00g209350.m01
Synteny	Csor.00g209350.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGCATTGCTAGTGATTACAACATTGATTCAGAAAATGTGCATAGACGATGGAGAATTTTCTGTAGATGTTGTTTGTTCTTTGTTTGATGATAACCAATTTGGATTGGTGATCCCTCTTCTGAAGCTATTGTTATGGAGCCACCACCTTGTTGTTCTGTTTGGGTTGTTGGGTTTCTGGTGCCAAGTCAGTCTTGGTTGGCTGGAGGTTGCTTTTGATACCCTGTGGTTGGTTGGTGCTCTTTCTGCTTTTCAATGGTTGGCTCCTCCTCTGTTTGGTGCCTTTTCTTTGGAGGTTTTGGCATTGTTCATTGGGTATGTTGCCTTGCTCCTTTCCACTTTAATAGATAAATTTTTAAAACAGTTATTCGATCTTCGATCTTCGTTCTTGAAGTGTAATATTGCTTTCGAGTTTCTCCCTTTTTCTACTCCGTGGTAA

mRNA sequence

ATGAGGGCATTGCTAGTGATTACAACATTGATTCAGAAAATGTGCATAGACGATGGAGAATTTTCTGTAGATGTTGTTTGTTCTTTGTTTGATGATAACCAATTTGGATTGGTGATCCCTCTTCTGAAGCTATTGTTATGGAGCCACCACCTTGTTGTTCTGTTTGGGTTGTTGGGTTTCTGGTGCCAAGTCAGTCTTGGTTGGCTGGAGGTTGCTTTTGATACCCTGTGGTTGGTTGGTGCTCTTTCTGCTTTTCAATGGTTGGCTCCTCCTCTGTTTGGTGCCTTTTCTTTGGAGGTTTTGGCATTGTTCATTGGGTATGTTGCCTTGCTCCTTTCCACTTTAATAGATAAATTTTTAAAACAGTTATTCGATCTTCGATCTTCGTTCTTGAAGTGTAATATTGCTTTCGAGTTTCTCCCTTTTTCTACTCCGTGGTAA

Coding sequence (CDS)

ATGAGGGCATTGCTAGTGATTACAACATTGATTCAGAAAATGTGCATAGACGATGGAGAATTTTCTGTAGATGTTGTTTGTTCTTTGTTTGATGATAACCAATTTGGATTGGTGATCCCTCTTCTGAAGCTATTGTTATGGAGCCACCACCTTGTTGTTCTGTTTGGGTTGTTGGGTTTCTGGTGCCAAGTCAGTCTTGGTTGGCTGGAGGTTGCTTTTGATACCCTGTGGTTGGTTGGTGCTCTTTCTGCTTTTCAATGGTTGGCTCCTCCTCTGTTTGGTGCCTTTTCTTTGGAGGTTTTGGCATTGTTCATTGGGTATGTTGCCTTGCTCCTTTCCACTTTAATAGATAAATTTTTAAAACAGTTATTCGATCTTCGATCTTCGTTCTTGAAGTGTAATATTGCTTTCGAGTTTCTCCCTTTTTCTACTCCGTGGTAA

Protein sequence

MRALLVITTLIQKMCIDDGEFSVDVVCSLFDDNQFGLVIPLLKLLLWSHHLVVLFGLLGFWCQVSLGWLEVAFDTLWLVGALSAFQWLAPPLFGAFSLEVLALFIGYVALLLSTLIDKFLKQLFDLRSSFLKCNIAFEFLPFSTPW

Homology

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BLAST of Csor.00g209350.m01 vs. NCBI nr
Match: KAG6599153.1 (hypothetical protein SDJN03_08931, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289 bits (740), Expect = 1.78e-98
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MRALLVITTLIQKMCIDDGEFSVDVVCSLFDDNQFGLVIPLLKLLLWSHHLVVLFGLLGF 60
           MRALLVITTLIQKMCIDDGEFSVDVVCSLFDDNQFGLVIPLLKLLLWSHHLVVLFGLLGF
Sbjct: 1   MRALLVITTLIQKMCIDDGEFSVDVVCSLFDDNQFGLVIPLLKLLLWSHHLVVLFGLLGF 60

Query: 61  WCQVSLGWLEVAFDTLWLVGALSAFQWLAPPLFGAFSLEVLALFIGYVALLLSTLIDKFL 120
           WCQVSLGWLEVAFDTLWLVGALSAFQWLAPPLFGAFSLEVLALFIGYVALLLSTLIDKFL
Sbjct: 61  WCQVSLGWLEVAFDTLWLVGALSAFQWLAPPLFGAFSLEVLALFIGYVALLLSTLIDKFL 120

Query: 121 KQLFDLRSSFLKCNIAFEFLPFSTPW 146
           KQLFDLRSSFLKCNIAFEFLPFSTPW
Sbjct: 121 KQLFDLRSSFLKCNIAFEFLPFSTPW 146

The following BLAST results are available for this feature:

BLAST of Csor.00g209350.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g209350.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599153.1	1.78e-98	100.00	hypothetical protein SDJN03_08931, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g209350.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g209350.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g209350	Csor.00g209350	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g209350.m01.CDS01	Csor.00g209350.m01.CDS01	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g209350.m01.stop_codon01	Csor.00g209350.m01.stop_codon01	stop_codon

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g209350.m01.single01	Csor.00g209350.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g209350.m01.start_codon01	Csor.00g209350.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g209350.m01	Csor.00g209350.m01-protein	polypeptide