Csor.00g178210.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGATTCGCCGCTTTAACGATGAAAATGATGAAGCTCCTTTGAGCACAGGAAGAGCTTTGCTTCCCATTCCAATCGTTAATGGCGGAAAATGGAGCCTATCGCCAAATTTTTGTTATTTTATATTAGAATTTTCAAATTTATATTTTTTATTTATTAAATTACTTAAAATTTTAATTTAATTTTTATATCTCAAATTTTCAACCATCGGAGCCCTAATTTTCAGTATCTGCGTCAGCACTCTCGGTCGATACTCACCGTCGTCTCTCAGCGCCTCAGGTTCGCAGCTTTCGTTCCCTCGTCTGGATTTTTCCCGTTCTCCTCTTCAAACAAGTGAGATTGAAGTATTATGATCTTTCAAATTTTCATTTCTTCAAGTTTATGCGTTGTTCTAGTCTAATTTTGGATTGATGTTGGGAAGGATCGATATTTTGGTATATTGGTTGTGCTTTAAGAGTATCGAATTATGTTTTCTTTCTGGCTAAACTAAACGATTTGATTCTCCTTCCTCCACCGATCCGAATGAACAGAAATTTGTACTGTGGCAGCTTAGGGAACAAATGCGTCATTCACTCGAGCGATTTCCATTTGTTCTTTTTCACGTTCTTGTCATCATTATGAAATGGCCGAGTTTCTGCCTGAGTAGTATGTGAGTATCACGAAAACTCTTGATTACACATTCAGACATACATTTCCTTGCATTTTAGTTAATTGTATTGGCTTGTACATGATTTTCTAGGGTCGACGGTAAAATTTTGAATGTTGGAGAGGAGCTGTGGAGGGAAACATTACCATTACAAATGGGTTCTCGCCTGTATCATCTTCAAGGGCTTAAACCTGATATGTGGTATGAAGTGAAGATATCATACCCGGGCTCTGTATGTGTTTTTTCTGTCCTCTTGAAGTTGAATTCTTTTAAACTCTCCTTCTGAGTCTGTCTCATTCAAGGAAATTATAGATGCCTGCCAGCTTCTCGTTAGAACTGAAGAGAGACTTGACAAGCCCTGTTGATAAGAAGAGCAGAAAACTTCTCGATACTGAAAAGCTTATTTTTAAGACAGAAAGCATGAACTTGCAGGGAGATCAGGTTGTCTTATCTTCTCCCCTTATTAGTTTAGGCGAATGATTGTAGACTTTGATTGATAAATTTGTTGAAGTTTCAAACTTACAGTTCTGAAACAGGTTGATACTCATGTATTGGTCTCTGTGATATCCGAGGGAGTTGTTGCCTTACCGTCCGCCCGGGAAAGGGATTCGATCATCTTCAATATAGGTATCTTCATATGCTTTTGAGCATCTTATCAATTTTCTTCTGTCGGACTTGTTAAAGGAAGTCATACATGGGTAGGATAAAAACTTTAGATCAACTAAAATTTTCTAGTCGAAGCATCGTTGGTGGTTTACAGTCCCAAGTGTTTTTTAATCTCATTTGCAGGACATTAGTTAGTAATGCTTCTGGTGTCAATTCAAAAGATGGTATGGAATTGTCCTGACACGAGAGTTCATGGAAAGAATTACTTAAATTATGCATATGAAACGCAAAAAAATTGATTCCATACATGATTTAAGAACCAAACATTTATTTCCCATTACTTGATCATAGCCTAAGCCCATTGTTAGTAGATATTGTTTGGTTTGGCTCGTTACGTATCGATGTCAACTTCACGGTTTTAAAACGCGTCTATTAGGGAGAGGTTTCCACACCCTATAAGGAATTGTTCGTTCTCCTCTCCAACCGATGTGGGATCTCATGATTCACCCTCCTTGGGGGCCAGCGTCCTCGCTGGCACACCGCTGGTGTCTAGTTCTGATACCATTTGTAACATCCAAGCCTACCACTAGCAGATATTGTGTCCTCTTTGGGTTTTTCCTTCCAGGCTTCCCCTCAAAGCTTTAAAACGTGTCTGCTAGGGAAAGGTTTCCACACCCTTATAAGATATGTTTCGTTTTCCTCTCCAATCGATGTGGGATCTCACAATCCACCTCCTTGAGGGCCCAGCATCCTCGCTGGCACACCGCTCGAACCCACCGCTAGTAGATATTGTCCGCTTTGGCTCATTACGTATTGCTGTTAACCTCACGATTTTAAAACGTGTATATTAGGGAGAGGTTTCCACACCTTGTTACAATATCTAATGTCCCAACTGGTTAAACCAACTCGAGAAAAAGAAATATGTTGTTGTTCTTACATTGTTGACAAGTGAGCTAAAAAGAGAAGAGTACAAGAAGGGGATTGAGAGTAGGATGGCTCATCCTAGCAGGGTACGTAGACAATTCCATTTTTTGTTACCCTTGTTTAGGGGGGTGTGTACTTAATTGTTGGTTCACTGTTAACGTCCAAAACCTGTTACCTCTTGCCCCTTTCATATGCTGGAGTCATATCAGTCTGCTTGCTTGACAGCAACATTTAACATCTCATCTGTTAGTATGATAGTTTCTGGCTTTTGTGACAGTCTGTGACGAACTACTCATCGGCATCCCGCACGAAGCTTGGGGGGTTGGAGGGTTGGTTATAATCTGCTTGATATTGGCATTCATAATCCCATCTTTTCTACCCTCATGGCTACTACGGACCAACCAAACCCAAGGACCAGGAAACCATCATGCATCCAAGAGTTCTTAA ATGAAGATTCGCCGCTTTAACGATGAAAATGATGAAGCTCCTTTGAGCACAGGAAGAGCTTTGCTTCCCATTCCAATCGTTAATGGCGGAAAATGGAGCCTATCGCCAAATTTTTTATCTGCGTCAGCACTCTCGGTCGATACTCACCGTCGTCTCTCAGCGCCTCAGGTTCGCAGCTTTCGTTCCCTCGTCTGGATTTTTCCCGTTCTCCTCTTCAAACAAAAATTTGTACTGTGGCAGCTTAGGGAACAAATGCGTCATTCACTCGAGCGATTTCCATTTGTTCTTTTTCACGTTCTTGTCATCATTATGAAATGGCCGAGTTTCTGCCTGAGTAGTATGGTCGACGGTAAAATTTTGAATGTTGGAGAGGAGCTGTGGAGGGAAACATTACCATTACAAATGGGTTCTCGCCTGTATCATCTTCAAGGGCTTAAACCTGATATGTGGTATGAAGTGAAGATATCATACCCGGGCTCTATGCCTGCCAGCTTCTCGTTAGAACTGAAGAGAGACTTGACAAGCCCTGTTGATAAGAAGAGCAGAAAACTTCTCGATACTGAAAAGCTTATTTTTAAGACAGAAAGCATGAACTTGCAGGGAGATCAGGTTGATACTCATGTATTGGTCTCTGTGATATCCGAGGGAGTTGTTGCCTTACCGTCCGCCCGGGAAAGGGATTCGATCATCTTCAATATAGTCTGTGACGAACTACTCATCGGCATCCCGCACGAAGCTTGGGGGGTTGGAGGGTTGGTTATAATCTGCTTGATATTGGCATTCATAATCCCATCTTTTCTACCCTCATGGCTACTACGGACCAACCAAACCCAAGGACCAGGAAACCATCATGCATCCAAGAGTTCTTAA ATGAAGATTCGCCGCTTTAACGATGAAAATGATGAAGCTCCTTTGAGCACAGGAAGAGCTTTGCTTCCCATTCCAATCGTTAATGGCGGAAAATGGAGCCTATCGCCAAATTTTTTATCTGCGTCAGCACTCTCGGTCGATACTCACCGTCGTCTCTCAGCGCCTCAGGTTCGCAGCTTTCGTTCCCTCGTCTGGATTTTTCCCGTTCTCCTCTTCAAACAAAAATTTGTACTGTGGCAGCTTAGGGAACAAATGCGTCATTCACTCGAGCGATTTCCATTTGTTCTTTTTCACGTTCTTGTCATCATTATGAAATGGCCGAGTTTCTGCCTGAGTAGTATGGTCGACGGTAAAATTTTGAATGTTGGAGAGGAGCTGTGGAGGGAAACATTACCATTACAAATGGGTTCTCGCCTGTATCATCTTCAAGGGCTTAAACCTGATATGTGGTATGAAGTGAAGATATCATACCCGGGCTCTATGCCTGCCAGCTTCTCGTTAGAACTGAAGAGAGACTTGACAAGCCCTGTTGATAAGAAGAGCAGAAAACTTCTCGATACTGAAAAGCTTATTTTTAAGACAGAAAGCATGAACTTGCAGGGAGATCAGGTTGATACTCATGTATTGGTCTCTGTGATATCCGAGGGAGTTGTTGCCTTACCGTCCGCCCGGGAAAGGGATTCGATCATCTTCAATATAGTCTGTGACGAACTACTCATCGGCATCCCGCACGAAGCTTGGGGGGTTGGAGGGTTGGTTATAATCTGCTTGATATTGGCATTCATAATCCCATCTTTTCTACCCTCATGGCTACTACGGACCAACCAAACCCAAGGACCAGGAAACCATCATGCATCCAAGAGTTCTTAA MKIRRFNDENDEAPLSTGRALLPIPIVNGGKWSLSPNFLSASALSVDTHRRLSAPQVRSFRSLVWIFPVLLFKQKFVLWQLREQMRHSLERFPFVLFHVLVIIMKWPSFCLSSMVDGKILNVGEELWRETLPLQMGSRLYHLQGLKPDMWYEVKISYPGSMPASFSLELKRDLTSPVDKKSRKLLDTEKLIFKTESMNLQGDQVDTHVLVSVISEGVVALPSARERDSIIFNIVCDELLIGIPHEAWGVGGLVIICLILAFIIPSFLPSWLLRTNQTQGPGNHHASKSS Homology
BLAST of Csor.00g178210.m01 vs. NCBI nr
Match: KAG6591724.1 (hypothetical protein SDJN03_14070, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 577 bits (1487), Expect = 1.29e-207 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. NCBI nr
Match: KAG7024606.1 (hypothetical protein SDJN02_13424 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 412 bits (1058), Expect = 1.44e-143 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. NCBI nr
Match: XP_022975678.1 (uncharacterized protein LOC111475555 [Cucurbita maxima] >XP_022975681.1 uncharacterized protein LOC111475555 [Cucurbita maxima]) HSP 1 Score: 402 bits (1034), Expect = 6.51e-140 Identity = 202/205 (98.54%), Postives = 202/205 (98.54%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. NCBI nr
Match: XP_022936341.1 (uncharacterized protein LOC111442991 [Cucurbita moschata] >XP_022936343.1 uncharacterized protein LOC111442991 [Cucurbita moschata]) HSP 1 Score: 398 bits (1022), Expect = 4.38e-138 Identity = 198/205 (96.59%), Postives = 200/205 (97.56%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. NCBI nr
Match: XP_023534968.1 (uncharacterized protein LOC111796539 [Cucurbita pepo subsp. pepo] >XP_023534969.1 uncharacterized protein LOC111796539 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 397 bits (1021), Expect = 6.22e-138 Identity = 200/205 (97.56%), Postives = 200/205 (97.56%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. ExPASy TrEMBL
Match: A0A6J1IJY5 (uncharacterized protein LOC111475555 OS=Cucurbita maxima OX=3661 GN=LOC111475555 PE=4 SV=1) HSP 1 Score: 402 bits (1034), Expect = 3.15e-140 Identity = 202/205 (98.54%), Postives = 202/205 (98.54%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. ExPASy TrEMBL
Match: A0A6J1F779 (uncharacterized protein LOC111442991 OS=Cucurbita moschata OX=3662 GN=LOC111442991 PE=4 SV=1) HSP 1 Score: 398 bits (1022), Expect = 2.12e-138 Identity = 198/205 (96.59%), Postives = 200/205 (97.56%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. ExPASy TrEMBL
Match: A0A1S3CRU2 (uncharacterized protein LOC103503615 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503615 PE=4 SV=1) HSP 1 Score: 362 bits (930), Expect = 2.16e-124 Identity = 179/205 (87.32%), Postives = 190/205 (92.68%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. ExPASy TrEMBL
Match: A0A0A0LEU4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895050 PE=4 SV=1) HSP 1 Score: 358 bits (920), Expect = 7.17e-123 Identity = 176/205 (85.85%), Postives = 190/205 (92.68%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. ExPASy TrEMBL
Match: A0A6J1BYR8 (uncharacterized protein LOC111006945 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006945 PE=4 SV=1) HSP 1 Score: 339 bits (869), Expect = 4.13e-115 Identity = 165/205 (80.49%), Postives = 188/205 (91.71%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. TAIR 10
Match: AT1G76480.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20890.1). ) HSP 1 Score: 180.6 bits (457), Expect = 1.7e-45 Identity = 93/184 (50.54%), Postives = 132/184 (71.74%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. TAIR 10
Match: AT1G20890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.2); Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 179.5 bits (454), Expect = 3.9e-45 Identity = 93/180 (51.67%), Postives = 128/180 (71.11%), Query Frame = 0
BLAST of Csor.00g178210.m01 vs. TAIR 10
Match: AT1G76480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20890.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 101.7 bits (252), Expect = 1.0e-21 Identity = 54/117 (46.15%), Postives = 83/117 (70.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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