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Csor.00g172690.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACAAGCGAAATCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCTCCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCACCGTCACCGACGAAATCCGCCGCCGCCGTCGAACAGATTATCGGTGGGAAATCGGCCAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA ATGCACAAGCGAAATCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCTCCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCACCGTCACCGACGAAATCCGCCGCCGCCGTCGAACAGATTATCGGTGGGAAATCGGCCAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA ATGCACAAGCGAAATCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCTCCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCACCGTCACCGACGAAATCCGCCGCCGCCGTCGAACAGATTATCGGTGGGAAATCGGCCAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA MHKRNLTTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNIIDGVGFGESLRGKYEWSP Homology
BLAST of Csor.00g172690.m01 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45 Identity = 99/142 (69.72%), Postives = 104/142 (73.24%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45 Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 3.1e-43 Identity = 90/115 (78.26%), Postives = 100/115 (86.96%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 6.9e-43 Identity = 87/116 (75.00%), Postives = 102/116 (87.93%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 9.0e-43 Identity = 85/106 (80.19%), Postives = 96/106 (90.57%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. NCBI nr
Match: KAG6577262.1 (Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 381 bits (979), Expect = 2.24e-133 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. NCBI nr
Match: XP_023522975.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 325 bits (834), Expect = 5.35e-111 Identity = 177/208 (85.10%), Postives = 178/208 (85.58%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. NCBI nr
Match: XP_038898148.1 (nuclear transcription factor Y subunit B-like [Benincasa hispida]) HSP 1 Score: 323 bits (829), Expect = 5.21e-110 Identity = 175/197 (88.83%), Postives = 176/197 (89.34%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. NCBI nr
Match: XP_008453748.1 (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA0044740.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa] >TYK16723.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa]) HSP 1 Score: 317 bits (813), Expect = 1.38e-107 Identity = 171/195 (87.69%), Postives = 175/195 (89.74%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. NCBI nr
Match: XP_004149164.1 (nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nuclear transcription factor Y subunit B-like [Cucumis sativus]) HSP 1 Score: 315 bits (808), Expect = 7.94e-107 Identity = 171/195 (87.69%), Postives = 173/195 (88.72%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. ExPASy TrEMBL
Match: A0A5D3CXU2 (Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005600 PE=3 SV=1) HSP 1 Score: 317 bits (813), Expect = 6.66e-108 Identity = 171/195 (87.69%), Postives = 175/195 (89.74%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. ExPASy TrEMBL
Match: A0A1S3BY72 (nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC103494392 PE=3 SV=1) HSP 1 Score: 317 bits (813), Expect = 6.66e-108 Identity = 171/195 (87.69%), Postives = 175/195 (89.74%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. ExPASy TrEMBL
Match: A0A0A0KXV6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G037610 PE=3 SV=1) HSP 1 Score: 315 bits (808), Expect = 3.84e-107 Identity = 171/195 (87.69%), Postives = 173/195 (88.72%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. ExPASy TrEMBL
Match: A0A6J1IZK6 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481354 PE=3 SV=1) HSP 1 Score: 310 bits (794), Expect = 6.63e-105 Identity = 170/202 (84.16%), Postives = 172/202 (85.15%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. ExPASy TrEMBL
Match: A0A6J1FNG6 (transcriptional activator HAP3-like OS=Cucurbita moschata OX=3662 GN=LOC111447051 PE=3 SV=1) HSP 1 Score: 306 bits (784), Expect = 2.53e-103 Identity = 169/206 (82.04%), Postives = 171/206 (83.01%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 ) HSP 1 Score: 183.0 bits (463), Expect = 2.4e-46 Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 ) HSP 1 Score: 175.3 bits (443), Expect = 4.9e-44 Identity = 87/116 (75.00%), Postives = 102/116 (87.93%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 ) HSP 1 Score: 174.9 bits (442), Expect = 6.4e-44 Identity = 85/106 (80.19%), Postives = 96/106 (90.57%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 ) HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40 Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 0
BLAST of Csor.00g172690.m01 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 ) HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40 Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following single feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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