Csor.00g172690 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g172690
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	nuclear transcription factor Y subunit B-like
Location	Csor_Chr16: 3554489 .. 3555070 (-)
RNA-Seq Expression	Csor.00g172690
Synteny	Csor.00g172690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAAGCGAAATCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCTCCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCACCGTCACCGACGAAATCCGCCGCCGCCGTCGAACAGATTATCGGTGGGAAATCGGCCAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA

mRNA sequence

ATGCACAAGCGAAATCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCTCCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCACCGTCACCGACGAAATCCGCCGCCGCCGTCGAACAGATTATCGGTGGGAAATCGGCCAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA

Coding sequence (CDS)

ATGCACAAGCGAAATCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCTCCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCACCGTCACCGACGAAATCCGCCGCCGCCGTCGAACAGATTATCGGTGGGAAATCGGCCAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA

Protein sequence

MHKRNLTTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNIIDGVGFGESLRGKYEWSP

Homology

[Close]

BLAST of Csor.00g172690 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45
Identity = 99/142 (69.72%), Postives = 104/142 (73.24%), Query Frame = 0


Query: 10  VSPVGSPTSDNIS-----------------------------DSSTKEQDRFLPIANVSR 69
           +SPVGSP  DN S                             DS  KEQDRFLPIANVSR
Sbjct: 11  LSPVGSPPLDNESGEAAAAAAAGGGGCGSSAGYVVYGGGGGGDSPAKEQDRFLPIANVSR 70

Query: 70  IMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 123
           IMK+SLPANAKISKE+KETVQECVSEFISF+TGEASDKCQREKRKTINGDDLLWAMTTLG
Sbjct: 71  IMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 130

[Close]

BLAST of Csor.00g172690 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 23  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 82
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 83  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQDD 131
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of Csor.00g172690 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.1e-43
Identity = 90/115 (78.26%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 16  PTSDNISD--------SSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEF 75
           P SDN S         +S +EQDRFLPIANVSRIMK++LPANAKISK+AKETVQECVSEF
Sbjct: 2   PDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEF 61

Query: 76  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEK 123
           ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+Y+ PLK+YL+K+RE E EK
Sbjct: 62  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116

[Close]

BLAST of Csor.00g172690 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.9e-43
Identity = 87/116 (75.00%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 14  GSPTS-DNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 73
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 74  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQ 129
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of Csor.00g172690 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.0e-43
Identity = 85/106 (80.19%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 22  SDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQR 81
           S  S +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 82  EKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLAR 128
           EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126

[Close]

BLAST of Csor.00g172690 vs. NCBI nr
Match: KAG6577262.1 (Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 381 bits (979), Expect = 2.24e-133
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MHKRNLTTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 60
           MHKRNLTTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETV
Sbjct: 1   MHKRNLTTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 60

Query: 61  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEE 120
           QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEE
Sbjct: 61  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEE 120

Query: 121 EKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNIIDGVG 180
           EKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNIIDGVG
Sbjct: 121 EKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNIIDGVG 180

Query: 181 FGESLRGKYEWSP 193
           FGESLRGKYEWSP
Sbjct: 181 FGESLRGKYEWSP 193

[Close]

BLAST of Csor.00g172690 vs. NCBI nr
Match: XP_023522975.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325 bits (834), Expect = 5.35e-111
Identity = 177/208 (85.10%), Postives = 178/208 (85.58%), Query Frame = 0


Query: 2   HKRNLTTTV--SPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 61
           HKRN TT    SPVGSPTS NISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKEAKET
Sbjct: 4   HKRNPTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKET 63

Query: 62  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 121
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE
Sbjct: 64  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETE 123

Query: 122 EEKHSLARQDDPSPSPTKSAAAV---EQIIGGKSANSVMDFQNLNSGFYSLGNH------ 181
           EEKHSLARQDD SPSP KS AAV   E IIGGKSANSVMDFQNLNSGFYSLG H      
Sbjct: 124 EEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNH 183

Query: 182 -----KSLNIIDGVGFGESLRGKYEWSP 193
                KS +IIDGVGFGESLRGKYEWSP
Sbjct: 184 HQGNQKSYHIIDGVGFGESLRGKYEWSP 211

[Close]

BLAST of Csor.00g172690 vs. NCBI nr
Match: XP_038898148.1 (nuclear transcription factor Y subunit B-like [Benincasa hispida])

HSP 1 Score: 323 bits (829), Expect = 5.21e-110
Identity = 175/197 (88.83%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 2   HKRNLTTT----VSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAK 61
           HKRN TTT    VSPVGSPTS NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAK
Sbjct: 4   HKRNFTTTAAAAVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAK 63

Query: 62  ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRE 121
           ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLK+YLNKYRE
Sbjct: 64  ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKMYLNKYRE 123

Query: 122 TEEEKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH------- 181
           TEEEKHSLARQDDPS SP KSAA  EQII GKSANSVMDFQN NSGFYSLGN        
Sbjct: 124 TEEEKHSLARQDDPSLSPAKSAA--EQIISGKSANSVMDFQNFNSGFYSLGNQNQNQGNQ 183

Query: 182 KSLNIIDGVGFGESLRG 187
           KS NIIDGVGFGESLRG
Sbjct: 184 KSFNIIDGVGFGESLRG 198

[Close]

BLAST of Csor.00g172690 vs. NCBI nr
Match: XP_008453748.1 (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA0044740.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa] >TYK16723.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (813), Expect = 1.38e-107
Identity = 171/195 (87.69%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 3   KRNLTTT---VSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN TTT   VSPVGSPTS NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+AKET
Sbjct: 5   KRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH-------KS 182
           EEKHSLARQ+DPS SP KS+A  E IIGGKSANSVMDFQN NSGFYSLGN        KS
Sbjct: 125 EEKHSLARQEDPSLSPAKSSA--EHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQKS 184

Query: 183 LNIIDGVGFGESLRG 187
            NIIDGVGFGE+LRG
Sbjct: 185 FNIIDGVGFGENLRG 197

[Close]

BLAST of Csor.00g172690 vs. NCBI nr
Match: XP_004149164.1 (nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nuclear transcription factor Y subunit B-like [Cucumis sativus])

HSP 1 Score: 315 bits (808), Expect = 7.94e-107
Identity = 171/195 (87.69%), Postives = 173/195 (88.72%), Query Frame = 0


Query: 3   KRNL---TTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN    T  VSPVGSPTS NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET
Sbjct: 5   KRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH-------KS 182
           EEKHSLARQ+DPS SP KSAA  E IIGGKSANSVMDFQN NSGFYSLGN        KS
Sbjct: 125 EEKHSLARQEDPSLSPPKSAA--EHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQKS 184

Query: 183 LNIIDGVGFGESLRG 187
            NIIDGVGFGE+LRG
Sbjct: 185 FNIIDGVGFGENLRG 197

[Close]

BLAST of Csor.00g172690 vs. ExPASy TrEMBL
Match: A0A5D3CXU2 (Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005600 PE=3 SV=1)

HSP 1 Score: 317 bits (813), Expect = 6.66e-108
Identity = 171/195 (87.69%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 3   KRNLTTT---VSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN TTT   VSPVGSPTS NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+AKET
Sbjct: 5   KRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH-------KS 182
           EEKHSLARQ+DPS SP KS+A  E IIGGKSANSVMDFQN NSGFYSLGN        KS
Sbjct: 125 EEKHSLARQEDPSLSPAKSSA--EHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQKS 184

Query: 183 LNIIDGVGFGESLRG 187
            NIIDGVGFGE+LRG
Sbjct: 185 FNIIDGVGFGENLRG 197

[Close]

BLAST of Csor.00g172690 vs. ExPASy TrEMBL
Match: A0A1S3BY72 (nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC103494392 PE=3 SV=1)

HSP 1 Score: 317 bits (813), Expect = 6.66e-108
Identity = 171/195 (87.69%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 3   KRNLTTT---VSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN TTT   VSPVGSPTS NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+AKET
Sbjct: 5   KRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH-------KS 182
           EEKHSLARQ+DPS SP KS+A  E IIGGKSANSVMDFQN NSGFYSLGN        KS
Sbjct: 125 EEKHSLARQEDPSLSPAKSSA--EHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQKS 184

Query: 183 LNIIDGVGFGESLRG 187
            NIIDGVGFGE+LRG
Sbjct: 185 FNIIDGVGFGENLRG 197

[Close]

BLAST of Csor.00g172690 vs. ExPASy TrEMBL
Match: A0A0A0KXV6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G037610 PE=3 SV=1)

HSP 1 Score: 315 bits (808), Expect = 3.84e-107
Identity = 171/195 (87.69%), Postives = 173/195 (88.72%), Query Frame = 0


Query: 3   KRNL---TTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN    T  VSPVGSPTS NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET
Sbjct: 5   KRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH-------KS 182
           EEKHSLARQ+DPS SP KSAA  E IIGGKSANSVMDFQN NSGFYSLGN        KS
Sbjct: 125 EEKHSLARQEDPSLSPPKSAA--EHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQKS 184

Query: 183 LNIIDGVGFGESLRG 187
            NIIDGVGFGE+LRG
Sbjct: 185 FNIIDGVGFGENLRG 197

[Close]

BLAST of Csor.00g172690 vs. ExPASy TrEMBL
Match: A0A6J1IZK6 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481354 PE=3 SV=1)

HSP 1 Score: 310 bits (794), Expect = 6.63e-105
Identity = 170/202 (84.16%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 2   HKRNLTTTV--SPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 61
           HKRN TT    SPVGSPTS NISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKEAKET
Sbjct: 4   HKRNPTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKET 63

Query: 62  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 121
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE
Sbjct: 64  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETE 123

Query: 122 EEKHSLARQDDPSPSPTKSAAAV---EQIIGGKSANSVMDFQNLNSGFYSLGNH------ 181
           EEKHSLARQDD SPSP KS AAV   E IIGGKSANSVMDFQNLNSGFYSLG H      
Sbjct: 124 EEKHSLARQDDHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNH 183

Query: 182 -----KSLNIIDGVGFGESLRG 187
                KS +IIDGVGFGE+LRG
Sbjct: 184 HPGNQKSYHIIDGVGFGENLRG 205

[Close]

BLAST of Csor.00g172690 vs. ExPASy TrEMBL
Match: A0A6J1FNG6 (transcriptional activator HAP3-like OS=Cucurbita moschata OX=3662 GN=LOC111447051 PE=3 SV=1)

HSP 1 Score: 306 bits (784), Expect = 2.53e-103
Identity = 169/206 (82.04%), Postives = 171/206 (83.01%), Query Frame = 0


Query: 2   HKRNLTTTV------SPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 61
           HKRN TT        SPVGSPTS NISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKE
Sbjct: 4   HKRNTTTATATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKE 63

Query: 62  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 121
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 64  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKY 123

Query: 122 RETEEEKHSLARQDDPSPSPTKSAAAV---EQIIGGKSANSVMDFQNLNSGFYSLGNH-- 181
           RETEEEKHSLARQDD SPSP KS AAV   E IIGGKSANSV DFQNLNSGFYSLG H  
Sbjct: 124 RETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVFDFQNLNSGFYSLGAHNH 183

Query: 182 ---------KSLNIIDGVGFGESLRG 187
                    KS +IIDGVGFGE+LRG
Sbjct: 184 NHNHHQGNPKSYHIIDGVGFGENLRG 209

[Close]

BLAST of Csor.00g172690 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-46
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 23  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 82
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 83  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQDD 131
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of Csor.00g172690 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 175.3 bits (443), Expect = 4.9e-44
Identity = 87/116 (75.00%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 14  GSPTS-DNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 73
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 74  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQ 129
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of Csor.00g172690 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 174.9 bits (442), Expect = 6.4e-44
Identity = 85/106 (80.19%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 22  SDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQR 81
           S  S +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 82  EKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLAR 128
           EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126

[Close]

BLAST of Csor.00g172690 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 11  SPVGSPTSDNISDSS-----TKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVS 70
           SP G  + ++  D S      +EQDRFLPIAN+SRIMK+ LPAN KI+K+AKE VQECVS
Sbjct: 8   SPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVS 67

Query: 71  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSL 130
           EFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE E +    
Sbjct: 68  EFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGS 127

Query: 131 ARQDDPS 133
           A+  DP+
Sbjct: 128 AKGGDPN 134

[Close]

BLAST of Csor.00g172690 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 11  SPVGSPTSDNISDSS-----TKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVS 70
           SP G  + ++  D S      +EQDRFLPIAN+SRIMK+ LPAN KI+K+AKE VQECVS
Sbjct: 8   SPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVS 67

Query: 71  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSL 130
           EFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE E +    
Sbjct: 68  EFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGS 127

Query: 131 ARQDDPS 133
           A+  DP+
Sbjct: 128 AKGGDPN 134

The following BLAST results are available for this feature:

BLAST of Csor.00g172690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J7P4	3.3e-45	69.72	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]
O23310	3.3e-45	85.32	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	3.1e-43	78.26	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9SIT9	6.9e-43	75.00	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	9.0e-43	80.19	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Csor.00g172690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577262.1	2.24e-133	100.00	Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subs...	[more]
XP_023522975.1	5.35e-111	85.10	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_038898148.1	5.21e-110	88.83	nuclear transcription factor Y subunit B-like [Benincasa hispida]	[more]
XP_008453748.1	1.38e-107	87.69	PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA00...	[more]
XP_004149164.1	7.94e-107	87.69	nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nucle...	[more]

BLAST of Csor.00g172690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXU2	6.66e-108	87.69	Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BY72	6.66e-108	87.69	nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KXV6	3.84e-107	87.69	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0376...	[more]
A0A6J1IZK6	6.63e-105	84.16	nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FNG6	2.53e-103	82.04	transcriptional activator HAP3-like OS=Cucurbita moschata OX=3662 GN=LOC11144705...	[more]

BLAST of Csor.00g172690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	2.4e-46	85.32	nuclear factor Y, subunit B3	[more]
AT2G13570.1	4.9e-44	75.00	nuclear factor Y, subunit B7	[more]
AT5G47640.1	6.4e-44	80.19	nuclear factor Y, subunit B2	[more]
AT2G37060.1	1.1e-40	65.35	nuclear factor Y, subunit B8	[more]
AT2G37060.2	1.1e-40	65.35	nuclear factor Y, subunit B8	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 108..128
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 79..97 score: 38.52 coord: 98..116 score: 41.63 coord: 60..78 score: 50.24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR11064:SF98	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11	coord: 14..172
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 19..154 e-value: 2.0E-47 score: 162.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 29..133
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 32..96 e-value: 4.9E-27 score: 94.0
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 14..172
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 63..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g172690.m01	Csor.00g172690.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding