Csor.00g171400.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g171400.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptiondof zinc finger protein DOF1.4
LocationCsor_Chr11: 8195863 .. 8196212 (+)
Sequence length267
RNA-Seq ExpressionCsor.00g171400.m01
SyntenyCsor.00g171400.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACTCACTTCCCATCCTCCCGCCATCTCATTCGATCGAAATTCACAGCTTTTCGGTAATTTCGAAGCTGGTTTGATGAAGGAAGACTTGAACAGGTAAATCACCGTTGAACTCAAAAGTTTAAATTGATAGATTGAACGTATAAAAAATTAATCATTTGTTCGCATTGACTTAATAGGCTGTCCCATAATCAAACCGAGCAAGTCGATCCATCGAATTTTTCTGACCCTTCTCTCGGTTCTGGAACTCATCAACCACGGCGACGAGCAATTGGCATGATCCGACGAATAATGGGTCCTCAATTGCTTCTCTATTCTAGGAGATCAAAGCATTGGGTGTCTATATAA

mRNA sequence

ATGCAACTCACTTCCCATCCTCCCGCCATCTCATTCGATCGAAATTCACAGCTTTTCGGTAATTTCGAAGCTGGTTTGATGAAGGAAGACTTGAACAGGCTGTCCCATAATCAAACCGAGCAAGTCGATCCATCGAATTTTTCTGACCCTTCTCTCGGTTCTGGAACTCATCAACCACGGCGACGAGCAATTGGCATGATCCGACGAATAATGGGTCCTCAATTGCTTCTCTATTCTAGGAGATCAAAGCATTGGGTGTCTATATAA

Coding sequence (CDS)

ATGCAACTCACTTCCCATCCTCCCGCCATCTCATTCGATCGAAATTCACAGCTTTTCGGTAATTTCGAAGCTGGTTTGATGAAGGAAGACTTGAACAGGCTGTCCCATAATCAAACCGAGCAAGTCGATCCATCGAATTTTTCTGACCCTTCTCTCGGTTCTGGAACTCATCAACCACGGCGACGAGCAATTGGCATGATCCGACGAATAATGGGTCCTCAATTGCTTCTCTATTCTAGGAGATCAAAGCATTGGGTGTCTATATAA

Protein sequence

MQLTSHPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPSLGSGTHQPRRRAIGMIRRIMGPQLLLYSRRSKHWVSI
Homology
[Close]
BLAST of Csor.00g171400.m01 vs. NCBI nr
Match: KAG6588551.1 (hypothetical protein SDJN03_17116, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183 bits (465), Expect = 2.19e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MQLTSHPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPSLGSGTHQPR 60
          MQLTSHPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPSLGSGTHQPR
Sbjct: 1  MQLTSHPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPSLGSGTHQPR 60

Query: 61 RRAIGMIRRIMGPQLLLYSRRSKHWVSI 88
          RRAIGMIRRIMGPQLLLYSRRSKHWVSI
Sbjct: 61 RRAIGMIRRIMGPQLLLYSRRSKHWVSI 88

[Close]
BLAST of Csor.00g171400.m01 vs. NCBI nr
Match: KAG6604456.1 (Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 4.78e-23
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS
Sbjct: 198 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 243

[Close]
BLAST of Csor.00g171400.m01 vs. NCBI nr
Match: XP_023544408.1 (dof zinc finger protein DOF1.4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.8 bits (242), Expect = 1.73e-22
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQ FGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS
Sbjct: 194 HPPAISFDRNSQFFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 239

[Close]
BLAST of Csor.00g171400.m01 vs. NCBI nr
Match: XP_022978746.1 (dof zinc finger protein DOF1.4 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 2.31e-22
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQV+PSNFSDPS
Sbjct: 191 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVNPSNFSDPS 236

[Close]
BLAST of Csor.00g171400.m01 vs. NCBI nr
Match: XP_022925833.1 (dof zinc finger protein DOF1.4 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 7.27e-22
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSD S
Sbjct: 198 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDSS 243

[Close]
BLAST of Csor.00g171400.m01 vs. ExPASy TrEMBL
Match: A0A6J1INW3 (dof zinc finger protein DOF1.4 OS=Cucurbita maxima OX=3661 GN=LOC111478610 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.12e-22
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQV+PSNFSDPS
Sbjct: 191 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVNPSNFSDPS 236

[Close]
BLAST of Csor.00g171400.m01 vs. ExPASy TrEMBL
Match: A0A6J1EGC8 (dof zinc finger protein DOF1.4 OS=Cucurbita moschata OX=3662 GN=LOC111433122 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.52e-22
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 6   HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDPS 51
           HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSD S
Sbjct: 198 HPPAISFDRNSQLFGNFEAGLMKEDLNRLSHNQTEQVDPSNFSDSS 243

[Close]
BLAST of Csor.00g171400.m01 vs. ExPASy TrEMBL
Match: A0A6J1KR08 (dof zinc finger protein DOF1.4-like OS=Cucurbita maxima OX=3661 GN=LOC111497470 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.36e-10
Identity = 37/53 (69.81%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 6   HPPAISFDRNSQLFGNFEAGL---MKE----DLNRLSHNQTEQVDPSNFSDPS 51
           H P ISFDRNSQL GNFEA L   MKE     LNRL  N TEQVD SNFSDPS
Sbjct: 173 HHPTISFDRNSQLSGNFEASLTMPMKEVKMEGLNRLRQNHTEQVDLSNFSDPS 225

[Close]
BLAST of Csor.00g171400.m01 vs. ExPASy TrEMBL
Match: A0A0A0KI37 (Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517950 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.63e-10
Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 6   HPPAISFDRNSQLFGNFEAGLMK-------EDLNRLSHNQTEQVDPSNFSDPS 51
           H P ISFDRNS L GN +  LM        EDLNRL  NQTEQ+D SNFSDPS
Sbjct: 169 HHPTISFDRNSHLLGNIDPNLMTSMKEIKIEDLNRLCQNQTEQIDLSNFSDPS 221

[Close]
BLAST of Csor.00g171400.m01 vs. ExPASy TrEMBL
Match: A0A5A7UBU9 (Dof zinc finger protein DOF1.7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007570 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.72e-10
Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 6   HPPAISFDRNSQLFGNFEAGLMK-------EDLNRLSHNQTEQVDPSNFSDPS 51
           H P ISFDRNS L GN +  LM        EDLNRL  NQTEQ+D SNFSDPS
Sbjct: 171 HHPTISFDRNSHLLGNIDPNLMTSMKEIKIEDLNRLCQNQTEQIDLSNFSDPS 223

The following BLAST results are available for this feature:
BLAST of Csor.00g171400.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g171400.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6588551.12.19e-58100.00hypothetical protein SDJN03_17116, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604456.14.78e-23100.00Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023544408.11.73e-2297.83dof zinc finger protein DOF1.4 [Cucurbita pepo subsp. pepo][more]
XP_022978746.12.31e-2297.83dof zinc finger protein DOF1.4 [Cucurbita maxima][more]
XP_022925833.17.27e-2297.83dof zinc finger protein DOF1.4 [Cucurbita moschata][more]
BLAST of Csor.00g171400.m01 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1INW31.12e-2297.83dof zinc finger protein DOF1.4 OS=Cucurbita maxima OX=3661 GN=LOC111478610 PE=4 ... [more]
A0A6J1EGC83.52e-2297.83dof zinc finger protein DOF1.4 OS=Cucurbita moschata OX=3662 GN=LOC111433122 PE=... [more]
A0A6J1KR083.36e-1069.81dof zinc finger protein DOF1.4-like OS=Cucurbita maxima OX=3661 GN=LOC111497470 ... [more]
A0A0A0KI374.63e-1062.26Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517950 PE... [more]
A0A5A7UBU94.72e-1062.26Dof zinc finger protein DOF1.7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Csor.00g171400.m01 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..62

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g171400Csor.00g171400gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g171400.m01.CDS01Csor.00g171400.m01.CDS01CDS
Csor.00g171400.m01.CDS02Csor.00g171400.m01.CDS02CDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g171400.m01.start_codon01Csor.00g171400.m01.start_codon01start_codon


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g171400.m01.initial01Csor.00g171400.m01.initial01initial


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g171400.m01.intron01Csor.00g171400.m01.intron01intron


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g171400.m01.terminal01Csor.00g171400.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g171400.m01.stop_codon01Csor.00g171400.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g171400.m01Csor.00g171400.m01-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding