Csor.00g159290.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g159290.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr10: 7844466 .. 7845946 (+)
Sequence length552
RNA-Seq ExpressionCsor.00g159290.m01
SyntenyCsor.00g159290.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAACCTATCAAATCTGACCCTATACACTAGTCCTCTCCTTTACAGAGTCTCAATATACACTCTTCCGCGAATAGCAGGAATTCAAGGGGATGTAACACAACTTACTGGAAAAGAGGCTAGTACTTATACTTACGAATCCTACCTACCCCCACAATACAATTTCTCAAAAGCTCAAATAGCCAAACCTCGTATGGAAACCTTACTGCTAGGGATACCGCCCACTCTTGGAAAGATCGTATACCAATCTATTCTCTCGCTCTATGGAAAGAAGGAAGTTAACTTACAGGCTCATCTAGATGAGGACGGGAAGGGAAGGTGGAATCTGTCCCTGATCAGAAAAGAGCACGAGGGTAGGAAAGTCACTCTCAGTCTCGTGGCTATAAGACCAACCGATCCGCTCCAGGTAAGATGACATGGATCTGAACACCTTGGTGGGATAAGAGAGTTGGAACTGTTATCAGGGTCTCCGTTTACATGATCAGTAAGAAATCATAGAAAAGATGAAAGAATGAATTGGAGTCTTATGTCCAACAGCGAACCAATGCCTTTCCTTTACCCATTTTGACTCGGTAAACCTTTCTATTAAAAGACATTCTTCCCTATTTGATATGTCTGGTAAGGCGCATTCAGTTGAGGGATAAAAACCTACCGGGAAACTCCTTGATTTCATCGATCATCTCATTGCCTCATGATTTCTGTCCAATGCTGTATTTCGACTACATTTCGCTACGCAATCCTAGCGCTAACTCAAGAAATATATAAAGCAAAGGGATGAATTGCTCTTTCTCCTCCTTTATATTCCCAGGAACACAAACAAAGAATTCCATTGCCTTCCTTTTTCACTGGTTAATTTTGTCAATTCTCTTTCTTTCTTACCTCGTTGATTGACTTTTGGCGATGTTATTTATACTCTTTCTAGAAGAGAAGACAGTGGTCGATAGCTTCCTTCTTTGATGAGGCAGACCATTGAATGTTCTTGCCATAGTTAATGTATGGTCTCTTGTCTCGATGAGGGCTGGTGTGCTATAATACTAGCAGCTCTCGGGTCTACTATCCCTTCTACTACCTACAGCCTTTAATAAAGAAGAAAGTCAGAAAGGCCTGGTTTCGTCTGGTAAGCTCTCCATATAGAACTTATATATCTGCTGTTAGCGCTTTCGTTTGGTTTTCTTTTCCATTCAATCCTTTTCGAGCTTTATTGGTCTAGTTTCAGTCAATGCCCTGTAAAGTAATAAAGTCAAGAAAATGGCAATAATCAATCATCTGATAGATGTCCTGATTCTACTGCGGATAAGAATCAATCCTTTTTCTGCTGCGTGGATCCTTTATCAGTCCGGGATGGCATCCTTTAAAGTTGAAAGTCAAGTAATTGGTTCATGGGAACTGGCTGGACAATCAAAGGTTGGGATATCTCATTTGATCTCAGCAAACCGCTTCGCGCTCAAAGAGAAAGTCATATCTTTAAGTTTAAGCTAG

mRNA sequence

ATGGGGAACCTATCAAATCTGACCCTATACACTAGTCCTCTCCTTTACAGAGTCTCAATATACACTCTTCCGCGAATAGCAGGAATTCAAGGGGATGTAACACAACTTACTGGAAAAGAGGCTAGTACTTATACTTACGAATCCTACCTACCCCCACAATACAATTTCTCAAAAGCTCAAATAGCCAAACCTCGTATGGAAACCTTACTGCTAGGGATACCGCCCACTCTTGGAAAGATCGTATACCAATCTATTCTCTCGCTCTATGGAAAGAAGGAAGTTAACTTACAGGCTCATCTAGATGAGGACGGGAAGGGAAGGTGGAATCTGTCCCTGATCAGAAAAGAGCACGAGGGTAGGAAAGTCACTCTCAGTCTCGTGGCTATAAGACCAACCGATCCGCTCCAGTCCGGGATGGCATCCTTTAAAGTTGAAAGTCAAGTAATTGGTTCATGGGAACTGGCTGGACAATCAAAGGTTGGGATATCTCATTTGATCTCAGCAAACCGCTTCGCGCTCAAAGAGAAAGTCATATCTTTAAGTTTAAGCTAG

Coding sequence (CDS)

ATGGGGAACCTATCAAATCTGACCCTATACACTAGTCCTCTCCTTTACAGAGTCTCAATATACACTCTTCCGCGAATAGCAGGAATTCAAGGGGATGTAACACAACTTACTGGAAAAGAGGCTAGTACTTATACTTACGAATCCTACCTACCCCCACAATACAATTTCTCAAAAGCTCAAATAGCCAAACCTCGTATGGAAACCTTACTGCTAGGGATACCGCCCACTCTTGGAAAGATCGTATACCAATCTATTCTCTCGCTCTATGGAAAGAAGGAAGTTAACTTACAGGCTCATCTAGATGAGGACGGGAAGGGAAGGTGGAATCTGTCCCTGATCAGAAAAGAGCACGAGGGTAGGAAAGTCACTCTCAGTCTCGTGGCTATAAGACCAACCGATCCGCTCCAGTCCGGGATGGCATCCTTTAAAGTTGAAAGTCAAGTAATTGGTTCATGGGAACTGGCTGGACAATCAAAGGTTGGGATATCTCATTTGATCTCAGCAAACCGCTTCGCGCTCAAAGAGAAAGTCATATCTTTAAGTTTAAGCTAG

Protein sequence

MGNLSNLTLYTSPLLYRVSIYTLPRIAGIQGDVTQLTGKEASTYTYESYLPPQYNFSKAQIAKPRMETLLLGIPPTLGKIVYQSILSLYGKKEVNLQAHLDEDGKGRWNLSLIRKEHEGRKVTLSLVAIRPTDPLQSGMASFKVESQVIGSWELAGQSKVGISHLISANRFALKEKVISLSLS
Homology
[Close]
BLAST of Csor.00g159290.m01 vs. NCBI nr
Match: KAG6585990.1 (hypothetical protein SDJN03_18723, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590346.1 hypothetical protein SDJN03_15769, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357 bits (917), Expect = 2.98e-124
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MGNLSNLTLYTSPLLYRVSIYTLPRIAGIQGDVTQLTGKEASTYTYESYLPPQYNFSKAQ 60
           MGNLSNLTLYTSPLLYRVSIYTLPRIAGIQGDVTQLTGKEASTYTYESYLPPQYNFSKAQ
Sbjct: 1   MGNLSNLTLYTSPLLYRVSIYTLPRIAGIQGDVTQLTGKEASTYTYESYLPPQYNFSKAQ 60

Query: 61  IAKPRMETLLLGIPPTLGKIVYQSILSLYGKKEVNLQAHLDEDGKGRWNLSLIRKEHEGR 120
           IAKPRMETLLLGIPPTLGKIVYQSILSLYGKKEVNLQAHLDEDGKGRWNLSLIRKEHEGR
Sbjct: 61  IAKPRMETLLLGIPPTLGKIVYQSILSLYGKKEVNLQAHLDEDGKGRWNLSLIRKEHEGR 120

Query: 121 KVTLSLVAIRPTDPLQSGMASFKVESQVIGSWELAGQSKVGISHLISANRFALKEKVISL 180
           KVTLSLVAIRPTDPLQSGMASFKVESQVIGSWELAGQSKVGISHLISANRFALKEKVISL
Sbjct: 121 KVTLSLVAIRPTDPLQSGMASFKVESQVIGSWELAGQSKVGISHLISANRFALKEKVISL 180

Query: 181 SLS 183
           SLS
Sbjct: 181 SLS 183

The following BLAST results are available for this feature:
BLAST of Csor.00g159290.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g159290.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585990.12.98e-124100.00hypothetical protein SDJN03_18723, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g159290.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g159290.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g159290Csor.00g159290gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159290.m01.CDS01Csor.00g159290.m01.CDS01CDS
Csor.00g159290.m01.CDS02Csor.00g159290.m01.CDS02CDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159290.m01.start_codon01Csor.00g159290.m01.start_codon01start_codon


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159290.m01.initial01Csor.00g159290.m01.initial01initial


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159290.m01.intron01Csor.00g159290.m01.intron01intron


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159290.m01.terminal01Csor.00g159290.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159290.m01.stop_codon01Csor.00g159290.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g159290.m01Csor.00g159290.m01-proteinpolypeptide