Csor.00g159080.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g159080.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	zinc finger BED domain-containing protein DAYSLEEPER-like
Location	Csor_Chr01: 3233146 .. 3233911 (-)
Sequence length	327
RNA-Seq Expression	Csor.00g159080.m01
Synteny	Csor.00g159080.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTTAACTCCCCTATGTGGAACAAACGCCAAAAATCTGATGAATATGGTTTCGCTGACCAACACAGAACCAAACCAAGCCTAGCAAAAGGAGGAAAAAGGAAGTCCATAGTCTGGGAGCACTTTACCATAGAAAATGTAAGTGCTGGATGTAGAAGGGCGTCTTGCAAGCAATGCAAGCAAAGGTTTAGCCATATGAGTACGGGATCAAAAGTATGACGGTACCAGTCACCTAAAACTGACATATTGACTTAAGGGAATATGTGCTGCACTTCTTCTCACGCAATCAGGACAAAAGTCATTTAACGCAATCGACTCCAGCTTCGAAAGGTAGTGATCCGCCAAAAAGAAACCGTTATAGAAGTTCCAACTCATCTTCTATCATGTTTGATCAGGAACGATGGTGCCCACGAATTCACTCGGATGATTATTATGCATGATTACCAACCCCACATGGGTTTTGAAAAAATCATGGATTTGTATCTTTTGGTACAGAATATCAACCTGCCAGATTTAATGTAAGGGATTTCAACCATTTCCAAGGGGACTGACATTGGAAAACTACCTAGCAGAAAAGCAAAGTGTCATCAAATTAATTGATGGGTATTCCAGGGCGCATCTGTCTTGTCGGGGGGGGGGGCTGGACATTGTGGACATCGAGTAAAACTGCTGGCTTATGATGTAATAAACAGGTCATTTTGGGGATAGCGGATTGGCAGCTGCACCGGCGGATTCTAAGCGTGGGCATGGAACCATATCCTGA

mRNA sequence

ATGATTGTTAACTCCCCTATGTGGAACAAACGCCAAAAATCTGATGAATATGGTTTCGCTGACCAACACAGAACCAAACCAAGCCTAGCAAAAGGAGGAAAAAGGAAGTCCATAGTCTGGGAGCACTTTACCATAGAAAATGTAAGTGCTGGATGTAGAAGGGCGTCTTGCAAGCAATGCAAGCAAAGGTTTAGCCATATGAGTACGGGATCAAAAGACAAAAGTCATTTAACGCAATCGACTCCAGCTTCGAAAGGTCATTTTGGGGATAGCGGATTGGCAGCTGCACCGGCGGATTCTAAGCGTGGGCATGGAACCATATCCTGA

Coding sequence (CDS)

ATGATTGTTAACTCCCCTATGTGGAACAAACGCCAAAAATCTGATGAATATGGTTTCGCTGACCAACACAGAACCAAACCAAGCCTAGCAAAAGGAGGAAAAAGGAAGTCCATAGTCTGGGAGCACTTTACCATAGAAAATGTAAGTGCTGGATGTAGAAGGGCGTCTTGCAAGCAATGCAAGCAAAGGTTTAGCCATATGAGTACGGGATCAAAAGACAAAAGTCATTTAACGCAATCGACTCCAGCTTCGAAAGGTCATTTTGGGGATAGCGGATTGGCAGCTGCACCGGCGGATTCTAAGCGTGGGCATGGAACCATATCCTGA

Protein sequence

MIVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCKQRFSHMSTGSKDKSHLTQSTPASKGHFGDSGLAAAPADSKRGHGTIS

Homology

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 38/97 (39.18%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 18  GFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCKQRFSHMSTGSKD---- 77
           G      + P  ++  ++KS+VWEHFTIE VS G  RA CK CKQ F++ S+GSK     
Sbjct: 50  GLVSAEMSTPPTSRRRRKKSLVWEHFTIEAVSGGATRACCKLCKQTFAY-SSGSKIAGTS 109

Query: 78  --KSHLT-QSTPASKGHFGDSGLAAAPADSKRGHGTI 108
             K H+T  S P  K       L  A      G GT+
Sbjct: 110 HLKRHITLGSCPIIKNQEHKLALTPAVGTDNDGEGTV 145

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy Swiss-Prot
Match: Q0JMB2 (Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0518400 PE=2 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 31  KGGKRKSIVWEHFTIENVSAGCRRASCKQCKQRFSHMSTGSKDK--SHLTQ 80
           +G KRKS +WEHFT+ +VS GC+RASC  C Q  ++ S+GSK+   SHLT+
Sbjct: 51  RGQKRKSAIWEHFTLVDVSDGCKRASCIHCNQSLAY-SSGSKNSGTSHLTR 100

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 27  PSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCKQRFSHMSTGSKD------KSHLT-Q 86
           P  ++  ++KS+VWEHFTIE VS G  RA CK CKQ F++ S+GSK       K H+T  
Sbjct: 59  PPTSRRRRKKSLVWEHFTIEAVSGGATRACCKLCKQTFAY-SSGSKIAGTSHLKRHITLG 118

Query: 87  STPASKGHFGDSGLAAAPADSKRGHGTI 108
           S P  K       L  A      G GT+
Sbjct: 119 SCPKIKNQEHKLLLTPAGGTDNDGEGTV 145

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-06
Identity = 39/112 (34.82%), Postives = 54/112 (48.21%), Query Frame = 0


Query: 1   MIVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQC 60
           MI  + M N  + +  +       T P+ ++  ++KS+VWEHFTIE +  G  RASC  C
Sbjct: 73  MIQVNEMVNGDKMAHGHELVGVELTTPTASRRRRKKSVVWEHFTIEEMPGGVSRASCNLC 132

Query: 61  KQRFSHMSTGSKD------KSHLT-QSTPASKGHFGDSGLAAAPADSKRGHG 106
           KQ F++ S GSK       K H+T  S P  K       L  A   +  G G
Sbjct: 133 KQTFAY-SCGSKISGTSHLKRHITLASCPMLKNEDMKLSLPLATVTNNDGEG 183

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.4e-06
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 31  KGGKRKSIVWEHFTIENVSAGCRRASCKQCKQRFSHMSTGSK--DKSHL 78
           K  K+KS+VWEHFTIE V   CRRA CK C Q F++ S G+K    SHL
Sbjct: 62  KRRKKKSMVWEHFTIEAVEPNCRRAFCKGCNQSFAY-SNGNKVAGTSHL 109

[Close]

BLAST of Csor.00g159080.m01 vs. NCBI nr
Match: KAG6607259.1 (Zinc finger BED domain-containing protein RICESLEEPER 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227 bits (578), Expect = 5.39e-75
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MIVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQC 60
           MIVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQC
Sbjct: 1   MIVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQC 60

Query: 61  KQRFSHMSTGSKDKSHLTQSTPASKGHFGDSGLAAAPADSKRGHGTIS 108
           KQRFSHMSTGSKDKSHLTQSTPASKGHFGDSGLAAAPADSKRGHGTIS
Sbjct: 61  KQRFSHMSTGSKDKSHLTQSTPASKGHFGDSGLAAAPADSKRGHGTIS 108

[Close]

BLAST of Csor.00g159080.m01 vs. NCBI nr
Match: XP_022938032.1 (zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita moschata] >XP_022938033.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita moschata])

HSP 1 Score: 94.4 bits (233), Expect = 8.44e-20
Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   IVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCK 61
           ++ +P   K   SDEYG      T+PS  K  K+KSIVWEHFTIE VSAGCRRA CKQCK
Sbjct: 7   MILTPYVEKTPNSDEYGALTSTETQPS--KRRKKKSIVWEHFTIETVSAGCRRAYCKQCK 66

Query: 62  QRFSHMSTGSK-----------------------DKSHLTQSTPASKG 86
           Q F++ STGSK                       DKSHLT STPASKG
Sbjct: 67  QSFAY-STGSKVAGTSHLKRHIAKGICAALLRNQDKSHLTPSTPASKG 111

[Close]

BLAST of Csor.00g159080.m01 vs. NCBI nr
Match: KAG6599379.1 (Zinc finger BED domain-containing protein DAYSLEEPER, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.6 bits (231), Expect = 1.54e-19
Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   IVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCK 61
           ++ +P   K   SDEYG       +PS  K  K+KSIVWEHFTIENVSAGCRRA CKQCK
Sbjct: 7   MMLTPYVEKTPNSDEYGALTNTEQQPS--KRRKKKSIVWEHFTIENVSAGCRRAYCKQCK 66

Query: 62  QRFSHMSTGSK-----------------------DKSHLTQSTPASKG 86
           Q F++ STGSK                       DKSHLT STPASKG
Sbjct: 67  QSFAY-STGSKVAGTSHLKRHIAKGICAALLRNQDKSHLTPSTPASKG 111

[Close]

BLAST of Csor.00g159080.m01 vs. NCBI nr
Match: XP_023546430.1 (zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp. pepo] >XP_023546431.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 1.57e-19
Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   IVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCK 61
           ++ +P   K   SDEYG       +PS  K  K+KSIVWEHFTIENVSAGCRRA CKQCK
Sbjct: 7   MMLTPYVEKTPNSDEYGALTNTEQQPS--KRRKKKSIVWEHFTIENVSAGCRRAYCKQCK 66

Query: 62  QRFSHMSTGSK-----------------------DKSHLTQSTPASKG 86
           Q F++ STGSK                       DKSHLT STPASKG
Sbjct: 67  QSFAY-STGSKVAGTSHLKRHIAKGICAALLRNQDKSHLTPSTPASKG 111

[Close]

BLAST of Csor.00g159080.m01 vs. NCBI nr
Match: XP_023538007.1 (zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp. pepo] >XP_023538008.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 1.57e-19
Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   IVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCK 61
           ++ +P   K   SDEYG      T+PS  K  K+KSIVWEHFTIE VSAGCRRA CKQCK
Sbjct: 7   MMLTPYVEKTPNSDEYGALTSTETQPS--KRRKKKSIVWEHFTIETVSAGCRRAYCKQCK 66

Query: 62  QRFSHMSTGSK-----------------------DKSHLTQSTPASKG 86
           Q F++ STGSK                       DKSHLT STPASKG
Sbjct: 67  QSFAY-STGSKVAGTSHLKRHIAKGICAALLRNQDKSHLTPSTPASKG 111

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy TrEMBL
Match: A0A6J1FHP8 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita moschata OX=3662 GN=LOC111444240 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.09e-20
Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   IVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCK 61
           ++ +P   K   SDEYG      T+PS  K  K+KSIVWEHFTIE VSAGCRRA CKQCK
Sbjct: 7   MILTPYVEKTPNSDEYGALTSTETQPS--KRRKKKSIVWEHFTIETVSAGCRRAYCKQCK 66

Query: 62  QRFSHMSTGSK-----------------------DKSHLTQSTPASKG 86
           Q F++ STGSK                       DKSHLT STPASKG
Sbjct: 67  QSFAY-STGSKVAGTSHLKRHIAKGICAALLRNQDKSHLTPSTPASKG 111

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy TrEMBL
Match: A0A6J1HM69 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita maxima OX=3661 GN=LOC111465464 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.61e-20
Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   IVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCK 61
           ++ +P   K   SDEYG      T+PS  K  K+KSIVWEHFTIE VSAGCRRA CKQCK
Sbjct: 7   MMLTPYVEKTPNSDEYGALTSTETQPS--KRRKKKSIVWEHFTIETVSAGCRRAYCKQCK 66

Query: 62  QRFSHMSTGSK-----------------------DKSHLTQSTPASKG 86
           Q F++ STGSK                       DKSHLT STPASKG
Sbjct: 67  QSFAY-STGSKVAGTSHLKRHIAKGICAALLRNRDKSHLTPSTPASKG 111

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy TrEMBL
Match: A0A6J1G3F2 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita moschata OX=3662 GN=LOC111450425 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.61e-20
Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   IVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCK 61
           ++ +P   K   SDEYG       +PS  K  K+KSIVWEHFTIENVSAGCRRA CKQCK
Sbjct: 7   MMLTPYVEKTPNSDEYGALTNTEQQPS--KRRKKKSIVWEHFTIENVSAGCRRAYCKQCK 66

Query: 62  QRFSHMSTGSK-----------------------DKSHLTQSTPASKG 86
           Q F++ STGSK                       DKSHLT STPASKG
Sbjct: 67  QSFAY-STGSKVAGTSHLKRHIAKGICAALLRNQDKSHLTPSTPASKG 111

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy TrEMBL
Match: A0A6J1KIC2 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita maxima OX=3661 GN=LOC111493517 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.94e-19
Identity = 55/108 (50.93%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   IVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCK 61
           ++ +P  +K   SDEYG       +P   K  K+KSIVWEHFTIENVSAGCRRA CKQCK
Sbjct: 7   MMLTPYMDKTPNSDEYGALTNTDQQPG--KRRKKKSIVWEHFTIENVSAGCRRAYCKQCK 66

Query: 62  QRFSHMSTGSK-----------------------DKSHLTQSTPASKG 86
           Q F++ STGSK                       DKSHLT STPASKG
Sbjct: 67  QSFAY-STGSKVAGTSHLKRHIAKGICAALLRNQDKSHLTPSTPASKG 111

[Close]

BLAST of Csor.00g159080.m01 vs. ExPASy TrEMBL
Match: A0A6J1CP38 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Momordica charantia OX=3673 GN=LOC111013039 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.33e-18
Identity = 54/108 (50.00%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 2   IVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCK 61
           ++ +P   K   SDEYG      T+P+  K  K+KSIVWEHFTIE VSAGCRRA CKQCK
Sbjct: 7   MMLTPYVEKTPNSDEYGALTNTETQPN--KRRKKKSIVWEHFTIETVSAGCRRAYCKQCK 66

Query: 62  QRFSHMSTGSK-----------------------DKSHLTQSTPASKG 86
           Q F++ STGSK                       DKS LT STPASKG
Sbjct: 67  QSFAY-STGSKVAGTSHLKRHIAKGICAALLRNQDKSQLTPSTPASKG 111

[Close]

BLAST of Csor.00g159080.m01 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 51.6 bits (122), Expect = 4.6e-07
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 31  KGGKRKSIVWEHFTIENVSAGCRRASCKQCKQRFSHMSTGSK--DKSHL 78
           K  K+KS+VWEHFTIE V   CRRA CK C Q F++ S G+K    SHL
Sbjct: 62  KRRKKKSMVWEHFTIEAVEPNCRRAFCKGCNQSFAY-SNGNKVAGTSHL 109

The following BLAST results are available for this feature:

BLAST of Csor.00g159080.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AVI0	1.5e-07	39.18	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]
Q0JMB2	2.6e-07	54.90	Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. j...	[more]
B9FJG3	1.3e-06	42.05	Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j...	[more]
Q75HY5	4.9e-06	34.82	Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j...	[more]
Q9M2N5	6.4e-06	57.14	Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=...	[more]

BLAST of Csor.00g159080.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607259.1	5.39e-75	100.00	Zinc finger BED domain-containing protein RICESLEEPER 2, partial [Cucurbita argy...	[more]
XP_022938032.1	8.44e-20	51.85	zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita moschata] >...	[more]
KAG6599379.1	1.54e-19	51.85	Zinc finger BED domain-containing protein DAYSLEEPER, partial [Cucurbita argyros...	[more]
XP_023546430.1	1.57e-19	51.85	zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp....	[more]
XP_023538007.1	1.57e-19	51.85	zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp....	[more]

BLAST of Csor.00g159080.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHP8	4.09e-20	51.85	zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita moschata ...	[more]
A0A6J1HM69	7.61e-20	51.85	zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita maxima OX...	[more]
A0A6J1G3F2	7.61e-20	51.85	zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita moschata ...	[more]
A0A6J1KIC2	1.94e-19	50.93	zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita maxima OX...	[more]
A0A6J1CP38	2.33e-18	50.00	zinc finger BED domain-containing protein DAYSLEEPER-like OS=Momordica charantia...	[more]

BLAST of Csor.00g159080.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	4.6e-07	57.14	BED zinc finger ;hAT family dimerisation domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..108
None	No IPR available	PANTHER	PTHR23272:SF144	SUBFAMILY NOT NAMED	coord: 19..77
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 19..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g159080	Csor.00g159080	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g159080.m01.CDS03	Csor.00g159080.m01.CDS03	CDS
Csor.00g159080.m01.CDS02	Csor.00g159080.m01.CDS02	CDS
Csor.00g159080.m01.CDS01	Csor.00g159080.m01.CDS01	CDS

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g159080.m01.terminal01	Csor.00g159080.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g159080.m01.stop_codon01	Csor.00g159080.m01.stop_codon01	stop_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g159080.m01.intron02	Csor.00g159080.m01.intron02	intron
Csor.00g159080.m01.intron01	Csor.00g159080.m01.intron01	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g159080.m01.internal01	Csor.00g159080.m01.internal01	internal

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g159080.m01.initial01	Csor.00g159080.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g159080.m01.start_codon01	Csor.00g159080.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g159080.m01	Csor.00g159080.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding