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Csor.00g159080 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTGTTAACTCCCCTATGTGGAACAAACGCCAAAAATCTGATGAATATGGTTTCGCTGACCAACACAGAACCAAACCAAGCCTAGCAAAAGGAGGAAAAAGGAAGTCCATAGTCTGGGAGCACTTTACCATAGAAAATGTAAGTGCTGGATGTAGAAGGGCGTCTTGCAAGCAATGCAAGCAAAGGTTTAGCCATATGAGTACGGGATCAAAAGTATGACGGTACCAGTCACCTAAAACTGACATATTGACTTAAGGGAATATGTGCTGCACTTCTTCTCACGCAATCAGGACAAAAGTCATTTAACGCAATCGACTCCAGCTTCGAAAGGTAGTGATCCGCCAAAAAGAAACCGTTATAGAAGTTCCAACTCATCTTCTATCATGTTTGATCAGGAACGATGGTGCCCACGAATTCACTCGGATGATTATTATGCATGATTACCAACCCCACATGGGTTTTGAAAAAATCATGGATTTGTATCTTTTGGTACAGAATATCAACCTGCCAGATTTAATGTAAGGGATTTCAACCATTTCCAAGGGGACTGACATTGGAAAACTACCTAGCAGAAAAGCAAAGTGTCATCAAATTAATTGATGGGTATTCCAGGGCGCATCTGTCTTGTCGGGGGGGGGGGCTGGACATTGTGGACATCGAGTAAAACTGCTGGCTTATGATGTAATAAACAGGTCATTTTGGGGATAGCGGATTGGCAGCTGCACCGGCGGATTCTAAGCGTGGGCATGGAACCATATCCTGA ATGATTGTTAACTCCCCTATGTGGAACAAACGCCAAAAATCTGATGAATATGGTTTCGCTGACCAACACAGAACCAAACCAAGCCTAGCAAAAGGAGGAAAAAGGAAGTCCATAGTCTGGGAGCACTTTACCATAGAAAATGTAAGTGCTGGATGTAGAAGGGCGTCTTGCAAGCAATGCAAGCAAAGGTTTAGCCATATGAGTACGGGATCAAAAGACAAAAGTCATTTAACGCAATCGACTCCAGCTTCGAAAGGTCATTTTGGGGATAGCGGATTGGCAGCTGCACCGGCGGATTCTAAGCGTGGGCATGGAACCATATCCTGA ATGATTGTTAACTCCCCTATGTGGAACAAACGCCAAAAATCTGATGAATATGGTTTCGCTGACCAACACAGAACCAAACCAAGCCTAGCAAAAGGAGGAAAAAGGAAGTCCATAGTCTGGGAGCACTTTACCATAGAAAATGTAAGTGCTGGATGTAGAAGGGCGTCTTGCAAGCAATGCAAGCAAAGGTTTAGCCATATGAGTACGGGATCAAAAGACAAAAGTCATTTAACGCAATCGACTCCAGCTTCGAAAGGTCATTTTGGGGATAGCGGATTGGCAGCTGCACCGGCGGATTCTAAGCGTGGGCATGGAACCATATCCTGA MIVNSPMWNKRQKSDEYGFADQHRTKPSLAKGGKRKSIVWEHFTIENVSAGCRRASCKQCKQRFSHMSTGSKDKSHLTQSTPASKGHFGDSGLAAAPADSKRGHGTIS Homology
BLAST of Csor.00g159080 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07 Identity = 38/97 (39.18%), Postives = 49/97 (50.52%), Query Frame = 0
BLAST of Csor.00g159080 vs. ExPASy Swiss-Prot
Match: Q0JMB2 (Zinc finger BED domain-containing protein RICESLEEPER 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0518400 PE=2 SV=3) HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07 Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0
BLAST of Csor.00g159080 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06 Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 0
BLAST of Csor.00g159080 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 4.9e-06 Identity = 39/112 (34.82%), Postives = 54/112 (48.21%), Query Frame = 0
BLAST of Csor.00g159080 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 6.4e-06 Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0
BLAST of Csor.00g159080 vs. NCBI nr
Match: KAG6607259.1 (Zinc finger BED domain-containing protein RICESLEEPER 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 227 bits (578), Expect = 5.39e-75 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of Csor.00g159080 vs. NCBI nr
Match: XP_022938032.1 (zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita moschata] >XP_022938033.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita moschata]) HSP 1 Score: 94.4 bits (233), Expect = 8.44e-20 Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0
BLAST of Csor.00g159080 vs. NCBI nr
Match: KAG6599379.1 (Zinc finger BED domain-containing protein DAYSLEEPER, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 93.6 bits (231), Expect = 1.54e-19 Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0
BLAST of Csor.00g159080 vs. NCBI nr
Match: XP_023546430.1 (zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp. pepo] >XP_023546431.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 93.6 bits (231), Expect = 1.57e-19 Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0
BLAST of Csor.00g159080 vs. NCBI nr
Match: XP_023538007.1 (zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp. pepo] >XP_023538008.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 93.6 bits (231), Expect = 1.57e-19 Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0
BLAST of Csor.00g159080 vs. ExPASy TrEMBL
Match: A0A6J1FHP8 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita moschata OX=3662 GN=LOC111444240 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 4.09e-20 Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0
BLAST of Csor.00g159080 vs. ExPASy TrEMBL
Match: A0A6J1HM69 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita maxima OX=3661 GN=LOC111465464 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 7.61e-20 Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0
BLAST of Csor.00g159080 vs. ExPASy TrEMBL
Match: A0A6J1G3F2 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita moschata OX=3662 GN=LOC111450425 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 7.61e-20 Identity = 56/108 (51.85%), Postives = 63/108 (58.33%), Query Frame = 0
BLAST of Csor.00g159080 vs. ExPASy TrEMBL
Match: A0A6J1KIC2 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucurbita maxima OX=3661 GN=LOC111493517 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 1.94e-19 Identity = 55/108 (50.93%), Postives = 63/108 (58.33%), Query Frame = 0
BLAST of Csor.00g159080 vs. ExPASy TrEMBL
Match: A0A6J1CP38 (zinc finger BED domain-containing protein DAYSLEEPER-like OS=Momordica charantia OX=3673 GN=LOC111013039 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 2.33e-18 Identity = 54/108 (50.00%), Postives = 62/108 (57.41%), Query Frame = 0
BLAST of Csor.00g159080 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain ) HSP 1 Score: 51.6 bits (122), Expect = 4.6e-07 Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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