Csor.00g121820.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g121820.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 19480162 .. 19482153 (+)
Sequence length231
RNA-Seq ExpressionCsor.00g121820.m01
SyntenyCsor.00g121820.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTGGAGAGCAGCTTGGATCCACAGATATATTTGCAATGGCCATTTTCCCAATGACTTCCCCAGTAATTGTAGCTGAAGATGAAGAAGAAGATGAATATGGAATGATACAAGTAAGTACACCACGAAAATAGTCATTTTGCAGAATGCACCAGATGGAGGCAATACAATGACAATACTCATTTAAAAAAAATCCTTTTTTGGCTTAGTTGCATACAAGAAGATTTTCCTTTTTTTTTAAACAAATAATTTTAGGTCGGAGTCGACCGATAGCTATTTTATTTTATTTTATTTTCGTTGTTAATGAGTAACCACGTCTTTATTTTGTCATTTACATTTCTTTTATCTGAACACTAATATTTTTAGAATATTATGGATTGAGTTATATTCGTGTTAGGCTATACGGGGCGGTAGATATACATATATAGCTCCTAAGTTAGCAAATTGATTGGCAGAAGCTTGTAGTTCATTAAAAAAAAAAAAAAAAAAATGGTCCAAAGAGTGGAGCACCAACTAATAAGTCAATTGCCAAAATTTTGGTTGAACTATAGATTCAATTCATGAGTTTGAATGGTTATCTATTCAGTCTTCAAGCTTTAATTCCCTCTTTTTAAGTCTTACAATCTTGAAAAGTTCTTAATTAAAATTGTTGAAATGTTATTTCATGCATTTAATGTCATTAATATGGTTGACTAAATGTTTTTAATTTAATTGTTTTGAGTCTAATGGTGAGGAATGTTTATCAAATTGGCTAACACAATATATGCTGCACAAAATTATAATACTATCCATCCGAACATAATATGATACAATGCCACTCTACGTGTACACATGTTATACTCTTTTTTTTTGTCAATTGATGATTCTAATTTCTAGAAAATAATACTCTATGATTGAGTCATAGTTCGTAGTTATATTGTATCTATTAGAGCCTTACAATTGGCTCATCTACAATTTGATATTATAATCCAAAATTTAGAAACATGAAACCATCTAAAATTTTGATCGTATAAAACGGTTAAAATAACTTTTTTTGGTCTCACGGATTTATAAGAATTTAAAATTTTGTTATGCTTAATGAATAATAAACTAACGCAATCAATTTATAAGTTATAAAGTCTAAATTATTAAATAGTAAAAATATATGTAATAGTCAAATGTAATTAAAAAAAATTGGAATTTAAAATATGAAAACTAAATTAGTAGGCATTAAATTTGTTGCCTAAGTTGTTATAACCAAAGTTGGCCTAAATTCAAAATTCCCACCGTTTCTTCGATTTCTTCGGAGATCAACAACCATTTCTCTTCTTTCACCGTTCTTTTCATTTGCGTCGCTGACTGTGCATTTCTGACCGCTGTTCACATTTTTCAATCAGATCGGTGGTTTTCCACCTGTTCGTAGACGTAGATCGGCCGTTTGGAAGGATTTCTCGTTCCAGGTTTTCCTTTCACAGAATTATTTCGCTCTACTTTCCTTTTGCACCAACTGATTTCGCCCATGTTTTCTAATTTCTAACTATGGAGTTTGTCAATTCCTGGTTTTCTTGATGGGACGACCCGAAATTTGTTCCCTGCCGTGATTTATTTTTCCTCAGAATCAGTATTAATGGCATCATTAGTGTTTTTGCCTGTCTTCAAATATTGAGTTTAAATGTGGAGGGCTGTTTCTGCGAGCTGTCTTTTCCAGTTTGGTTGTTGATCTTAGTTATTGCAATGTTGGCGGTTCAAGTGAATTTATAGTGGCTACAAAATTAAGAATGTGAATTGTAGACCAGGGCGACGTCCGGCAATTGTGACCGCGTTTGATGCTTGCCGTATACGTTGTGGTGTCGCTACGACTTTTCTGAAACTCTAGTGTAGACAAGTTGCGAACTCTTTGTTTAATTATTCAACTTTTTGCTTAAGAGGTTGGTTTCTCTCTTTTTTCATCTTTTCAGGCGTGGTTTGACATCAGATTCAAGCTTGGCGTTCTGGAAACTGTAAATTGA

mRNA sequence

ATGAAGATTGGAGAGCAGCTTGGATCCACAGATATATTTGCAATGGCCATTTTCCCAATGACTTCCCCAGTAATTGTAGCTGAAGATGAAGAAGAAGATGAATATGGAATGATACAAATCGGTGGTTTTCCACCTGTTCGTAGACGTAGATCGGCCGTTTGGAAGGATTTCTCGTTCCAGGCGTGGTTTGACATCAGATTCAAGCTTGGCGTTCTGGAAACTGTAAATTGA

Coding sequence (CDS)

ATGAAGATTGGAGAGCAGCTTGGATCCACAGATATATTTGCAATGGCCATTTTCCCAATGACTTCCCCAGTAATTGTAGCTGAAGATGAAGAAGAAGATGAATATGGAATGATACAAATCGGTGGTTTTCCACCTGTTCGTAGACGTAGATCGGCCGTTTGGAAGGATTTCTCGTTCCAGGCGTGGTTTGACATCAGATTCAAGCTTGGCGTTCTGGAAACTGTAAATTGA

Protein sequence

MKIGEQLGSTDIFAMAIFPMTSPVIVAEDEEEDEYGMIQIGGFPPVRRRRSAVWKDFSFQAWFDIRFKLGVLETVN
Homology
[Close]
BLAST of Csor.00g121820.m01 vs. NCBI nr
Match: KAG6602405.1 (hypothetical protein SDJN03_07638, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161 bits (407), Expect = 6.58e-50
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MKIGEQLGSTDIFAMAIFPMTSPVIVAEDEEEDEYGMIQIGGFPPVRRRRSAVWKDFSFQ 60
          MKIGEQLGSTDIFAMAIFPMTSPVIVAEDEEEDEYGMIQIGGFPPVRRRRSAVWKDFSFQ
Sbjct: 1  MKIGEQLGSTDIFAMAIFPMTSPVIVAEDEEEDEYGMIQIGGFPPVRRRRSAVWKDFSFQ 60

Query: 61 AWFDIRFKLGVLETVN 76
          AWFDIRFKLGVLETVN
Sbjct: 61 AWFDIRFKLGVLETVN 76

The following BLAST results are available for this feature:
BLAST of Csor.00g121820.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g121820.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602405.16.58e-50100.00hypothetical protein SDJN03_07638, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g121820.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g121820.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g121820Csor.00g121820gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g121820.m01.CDS03Csor.00g121820.m01.CDS03CDS
Csor.00g121820.m01.CDS02Csor.00g121820.m01.CDS02CDS
Csor.00g121820.m01.CDS01Csor.00g121820.m01.CDS01CDS


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g121820.m01.initial01Csor.00g121820.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g121820.m01.start_codon01Csor.00g121820.m01.start_codon01start_codon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g121820.m01.intron02Csor.00g121820.m01.intron02intron
Csor.00g121820.m01.intron01Csor.00g121820.m01.intron01intron


The following internal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g121820.m01.internal01Csor.00g121820.m01.internal01internal


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g121820.m01.terminal01Csor.00g121820.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g121820.m01.stop_codon01Csor.00g121820.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g121820.m01Csor.00g121820.m01-proteinpolypeptide