Csor.00g120000.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAACCTAATCCCTCACCCCTCCGTTTGGATTATTCGATTTTGTCTAACATTTTCTTGACCACCTCGCTTTTGCTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGTACTTAGGGTTTTTTTTTCCTCTGTCGCCTTGGTATCTCTTTCCGATGTCAATGAATAGTTTAGGTTTAGGTTTGTCTTTCTATTGATCTTTTTTGATCTGTAATGGCCAAACAATGTACACGCATCTGGAATTTTTTTTTTCTAGACGCTGTTTCAATGTAACCGCTATCGATGTCCCGCCAACACTGAACTAAGATTCGTGTTTTTCACCAGCGGTTTTTTTTAATTTTCCTGTTCTGTTGCTGACTCTCTTGAATTTTCATGTTGCATAGGCTCAGATTTAGTACGTATTTGCAATTATCTGTGTGATTTTGGTCTACTGTTTCTCATTCTGTGATTTCTTATTGACGCGAATAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCGTATGATCGTTTTCTTAACATGTTATTTCTTTACCTTCCATTATTACAACATGAATGATAATTTCAATGTTTGTTTCTGGTACAGAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGGGTATATTTTCATTTAACATACTTTCACTTTTTGGCTCTATCGTTTTTATTCACTTTCTAGGCTTTCAATTATTTAAATCGTACGAGCCGCTGAGTGATATGTTTGTAAATTAATTTTGCGATGACCTGCTAGGAATTAAAACTTGAGTTATATAATTGTTACTACAGTTCTATATGGCCAATGTTTAGTGTACGGATCCTCTTATTCTTTCAAACAATTCTCACAATTTACTACTGGATCATTGTTGACACTGGCTCTTGGAAGTTGTGATGTTTATATATCATTGAATACGCCCTCTTCTTACTTTAATGACTGTTGTTACCCTGTGTCCTTTGGCTGGGTGATGAATCATCTTTTGCTTCCATAGTTCTTGGCCCTCTTGTTTTTTCTTACGAGTCTAACATTTCTGGTAATGTAAGGTTGATGTACTTTTGAAAGAGAAATTGTTTTGTTCGTTTATATACATTAACAATTTATGGTTGTTCGAAGCTGCTTATAGTGATTATCTCTATTCCAAATGTGTTTCTATTGCTGTTGCTTATTTTGACGGTTGAATTTTGTCCTTTGTTTCTCAGGATGATATGCCAAAGCCTGGACAGCCAGGACCGGCCCCTCGCGTTGGTGCTGGAGCTGGAGCTCCTCCTCCCCGTCCCTGA ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGGGATGATATGCCAAAGCCTGGACAGCCAGGACCGGCCCCTCGCGTTGGTGCTGGAGCTGGAGCTCCTCCTCCCCGTCCCTGA ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGGGATGATATGCCAAAGCCTGGACAGCCAGGACCGGCCCCTCGCGTTGGTGCTGGAGCTGGAGCTCCTCCTCCCCGTCCCTGA MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGPAPRVGAGAGAPPPRP Homology
BLAST of Csor.00g120000.m01 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 2.2e-53 Identity = 105/128 (82.03%), Postives = 111/128 (86.72%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2) HSP 1 Score: 208.8 bits (530), Expect = 3.8e-53 Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2) HSP 1 Score: 206.8 bits (525), Expect = 1.5e-52 Identity = 106/131 (80.92%), Postives = 112/131 (85.50%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2) HSP 1 Score: 191.0 bits (484), Expect = 8.2e-48 Identity = 96/129 (74.42%), Postives = 108/129 (83.72%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 4.5e-38 Identity = 80/118 (67.80%), Postives = 91/118 (77.12%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. NCBI nr
Match: KAG6602587.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 267 bits (683), Expect = 2.86e-90 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. NCBI nr
Match: XP_022923523.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023529343.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 264 bits (675), Expect = 4.75e-89 Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. NCBI nr
Match: XP_022939944.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023549643.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo] >KAG6578479.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 252 bits (644), Expect = 2.46e-84 Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. NCBI nr
Match: XP_038884330.1 (40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosomal protein S26-3-like [Benincasa hispida]) HSP 1 Score: 249 bits (635), Expect = 5.61e-83 Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia]) HSP 1 Score: 248 bits (632), Expect = 1.56e-82 Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. ExPASy TrEMBL
Match: A0A6J1JRW7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1) HSP 1 Score: 264 bits (675), Expect = 2.30e-89 Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. ExPASy TrEMBL
Match: A0A6J1E9V7 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=1) HSP 1 Score: 264 bits (675), Expect = 2.30e-89 Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1) HSP 1 Score: 252 bits (644), Expect = 1.19e-84 Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. ExPASy TrEMBL
Match: A0A6J1FIL8 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=1) HSP 1 Score: 252 bits (644), Expect = 1.19e-84 Identity = 123/128 (96.09%), Postives = 125/128 (97.66%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. ExPASy TrEMBL
Match: A0A6J1BXZ8 (40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV=1) HSP 1 Score: 248 bits (632), Expect = 7.53e-83 Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein ) HSP 1 Score: 209.5 bits (532), Expect = 1.6e-54 Identity = 105/128 (82.03%), Postives = 111/128 (86.72%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein ) HSP 1 Score: 208.8 bits (530), Expect = 2.7e-54 Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0
BLAST of Csor.00g120000.m01 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein ) HSP 1 Score: 206.8 bits (525), Expect = 1.0e-53 Identity = 106/131 (80.92%), Postives = 112/131 (85.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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