Csor.00g119760.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g119760.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 20534950 .. 20536841 (+)
Sequence length	261
RNA-Seq Expression	Csor.00g119760.m01
Synteny	Csor.00g119760.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCCTTCAAACTCATTGGAAAACAACGACATCTCGTCGATTTGAGCTTCAATCTCGGCTTGCATGTAACCACCACCGCCTTGAGACGGCGGCGATGGCGATGGCGATTGTCTACTACTGGTTCGTAATATGATAAATTCAGATTTTTATTATATACATATCTATATATATATAGATATTTGGTGTGTTTGAGCTCTTTTTAGAGGTTGTGGTAATTGGATCGATCATCTCGATTCGATTTTTTTTCACACAATTCATCAATCGAATTGATGTTTTTGCATGATATGGATTGAATTTTGGTTGCTTCATTGTTCAAACTTGTGTTCTCCATTTGTTGGAAGTATCAACAATTGTCTCTCACAATAAAAACTTAAATTTTTTCTTTATCATTTTCCATAAGTTTGATTTGATCATTGTTATGTTTTTTTTTTTTTTTTTCAAATTTAAGATTGTTTTAATTTATGGGAATTAATTAATTTTGATAAATTAGAGTGTGGTAAAGCTGAGTTTATGAATTAGGGTTTTGAGTTGTCAATGCATGGCTGCAAAAAGCACTGCAAAAAGTCAAAGAAGGTGTAGGGAACTTCTGCCCTTTTGTTAACCCAACATGCAAACCTTTAATCAATCTCCTGAGGATTCGTTTGAAAACAACTGCTTTTCTTTTTAATTTTCTGCTGTATTCAAAGTAATGTCGTTTACCAAGAACTCTCTCTTTTATAAAGATTCTATCCCAAAAGAATTTATGGTAAGGCGGTTCTGATTATTTTTATTTATTTATTTATATATATTTATAAGGAGATAACGGAAGGAATTATATATGGATTAGGCAATTATTAAAGTGGATTACAAGATTTTATTATATCTATAAAGTTTATGTTTATAAAGTACATTAATTGTCGGGACACTAGTAAGTAATTTAATACTTTTAGATGATCATAGTGATTTTTATTATATAGTTTATTTTTATCCAAATTTTTAAAATATAAACGAGTTTTTAAGATTATATTCCAAATGAAAGTTCATGGAAGACCAATAGAACGCCTATATAATAAGTGACTGAGGAAATTATTTTAAGAAAATAAATTATTTGAGAAGCTTCTTTTAACATGTCTTCCCTAATTATGAAGTGTTAAGACTATATGTGGGTTTTTTTTTTTCAAATAAAATAAAATAAAATATTTAGTTCCTTGTAAGCCAATTTTATACAAATTTAGTGGACAAATTATAAATATTCTTCTTAGAAATGTTTTTTTTTCTCTCTAAATTTATACTAATTCTCTAAATATTATATAAGAAAATATATCATTAACTGATTTTAATATTTAATAATAGAGTGGTGTTAAATTAAAATTTTAAAAAAGGTAAAAGAATCTGGATTTTTTTCTTTTTAAATGATAGGAAATAAATTAAATTTTAAGAAAGATGAATAATTTTGAAAATTACACCAACTATTTTTCTGGTCATGTTATTTATCATTGGGCTAGTTCAGTCGTTTATTAGGCCCATAAACGGCCCAAGTGGCCCACCGAAGTACAAGCCGGCTTTAAATTAGGGTTTCTCACTATATATTGTAATCCGCAGCCTTTGCCTCCAGAACGTCGTCGATCCTGTCATTTGTTTCGTTTGCTTTGAGGCCAGTCTTGTTCTGTATCAGATCGATTAGCAGGTCTTCAACATGAGGGCGAAGGTAAGTGAATTTATTTATTTATTTATTTTTTTTTAATGAAATATTTATGTAAATATTGCTTGGTTCTCTTGTTGATTTTTGTTGTTGTTTGTTTGCGTTTTTGTTTCGATTTACCAGTGGAAGAAGAAGAGAATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAAAGATCCAAGTAGTTTGTGTCTTTTTTTAA

mRNA sequence

ATGGGTCTCCTTCAAACTCATTGGAAAACAACGACATCTCGTCGATTTGAGCTTCAATCTCGGCTTGCATGTAACCACCACCGCCTTGAGACGGCGGCGATGGCGATGGCGATTGTCTACTACTGGTTCTCTTGTTCTGTATCAGATCGATTAGCAGGTCTTCAACATGAGGGCGAAGTGGAAGAAGAAGAGAATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAAAGATCCAAGTAGTTTGTGTCTTTTTTTAA

Coding sequence (CDS)

ATGGGTCTCCTTCAAACTCATTGGAAAACAACGACATCTCGTCGATTTGAGCTTCAATCTCGGCTTGCATGTAACCACCACCGCCTTGAGACGGCGGCGATGGCGATGGCGATTGTCTACTACTGGTTCTCTTGTTCTGTATCAGATCGATTAGCAGGTCTTCAACATGAGGGCGAAGTGGAAGAAGAAGAGAATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAAAGATCCAAGTAGTTTGTGTCTTTTTTTAA

Protein sequence

MGLLQTHWKTTTSRRFELQSRLACNHHRLETAAMAMAIVYYWFSCSVSDRLAGLQHEGEVEEEENEEIEEEAPKDEAKIQVVCVFF

Homology

[Close]

BLAST of Csor.00g119760.m01 vs. NCBI nr
Match: KAG6602611.1 (hypothetical protein SDJN03_07844, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (440), Expect = 1.24e-54
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGLLQTHWKTTTSRRFELQSRLACNHHRLETAAMAMAIVYYWFSCSVSDRLAGLQHEGEV 60
          MGLLQTHWKTTTSRRFELQSRLACNHHRLETAAMAMAIVYYWFSCSVSDRLAGLQHEGEV
Sbjct: 1  MGLLQTHWKTTTSRRFELQSRLACNHHRLETAAMAMAIVYYWFSCSVSDRLAGLQHEGEV 60

Query: 61 EEEENEEIEEEAPKDEAKIQVVCVFF 86
          EEEENEEIEEEAPKDEAKIQVVCVFF
Sbjct: 61 EEEENEEIEEEAPKDEAKIQVVCVFF 86

The following BLAST results are available for this feature:

BLAST of Csor.00g119760.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g119760.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602611.1	1.24e-54	100.00	hypothetical protein SDJN03_07844, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g119760.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g119760.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..71

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g119760	Csor.00g119760	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g119760.m01.CDS03	Csor.00g119760.m01.CDS03	CDS
Csor.00g119760.m01.CDS02	Csor.00g119760.m01.CDS02	CDS
Csor.00g119760.m01.CDS01	Csor.00g119760.m01.CDS01	CDS

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g119760.m01.initial01	Csor.00g119760.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g119760.m01.start_codon01	Csor.00g119760.m01.start_codon01	start_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g119760.m01.intron02	Csor.00g119760.m01.intron02	intron
Csor.00g119760.m01.intron01	Csor.00g119760.m01.intron01	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g119760.m01.internal01	Csor.00g119760.m01.internal01	internal

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g119760.m01.terminal01	Csor.00g119760.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g119760.m01.stop_codon01	Csor.00g119760.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g119760.m01	Csor.00g119760.m01-protein	polypeptide