Csor.00g119760 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g119760
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 20534950 .. 20536841 (+)
RNA-Seq Expression	Csor.00g119760
Synteny	Csor.00g119760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCCTTCAAACTCATTGGAAAACAACGACATCTCGTCGATTTGAGCTTCAATCTCGGCTTGCATGTAACCACCACCGCCTTGAGACGGCGGCGATGGCGATGGCGATTGTCTACTACTGGTTCGTAATATGATAAATTCAGATTTTTATTATATACATATCTATATATATATAGATATTTGGTGTGTTTGAGCTCTTTTTAGAGGTTGTGGTAATTGGATCGATCATCTCGATTCGATTTTTTTTCACACAATTCATCAATCGAATTGATGTTTTTGCATGATATGGATTGAATTTTGGTTGCTTCATTGTTCAAACTTGTGTTCTCCATTTGTTGGAAGTATCAACAATTGTCTCTCACAATAAAAACTTAAATTTTTTCTTTATCATTTTCCATAAGTTTGATTTGATCATTGTTATGTTTTTTTTTTTTTTTTTCAAATTTAAGATTGTTTTAATTTATGGGAATTAATTAATTTTGATAAATTAGAGTGTGGTAAAGCTGAGTTTATGAATTAGGGTTTTGAGTTGTCAATGCATGGCTGCAAAAAGCACTGCAAAAAGTCAAAGAAGGTGTAGGGAACTTCTGCCCTTTTGTTAACCCAACATGCAAACCTTTAATCAATCTCCTGAGGATTCGTTTGAAAACAACTGCTTTTCTTTTTAATTTTCTGCTGTATTCAAAGTAATGTCGTTTACCAAGAACTCTCTCTTTTATAAAGATTCTATCCCAAAAGAATTTATGGTAAGGCGGTTCTGATTATTTTTATTTATTTATTTATATATATTTATAAGGAGATAACGGAAGGAATTATATATGGATTAGGCAATTATTAAAGTGGATTACAAGATTTTATTATATCTATAAAGTTTATGTTTATAAAGTACATTAATTGTCGGGACACTAGTAAGTAATTTAATACTTTTAGATGATCATAGTGATTTTTATTATATAGTTTATTTTTATCCAAATTTTTAAAATATAAACGAGTTTTTAAGATTATATTCCAAATGAAAGTTCATGGAAGACCAATAGAACGCCTATATAATAAGTGACTGAGGAAATTATTTTAAGAAAATAAATTATTTGAGAAGCTTCTTTTAACATGTCTTCCCTAATTATGAAGTGTTAAGACTATATGTGGGTTTTTTTTTTTCAAATAAAATAAAATAAAATATTTAGTTCCTTGTAAGCCAATTTTATACAAATTTAGTGGACAAATTATAAATATTCTTCTTAGAAATGTTTTTTTTTCTCTCTAAATTTATACTAATTCTCTAAATATTATATAAGAAAATATATCATTAACTGATTTTAATATTTAATAATAGAGTGGTGTTAAATTAAAATTTTAAAAAAGGTAAAAGAATCTGGATTTTTTTCTTTTTAAATGATAGGAAATAAATTAAATTTTAAGAAAGATGAATAATTTTGAAAATTACACCAACTATTTTTCTGGTCATGTTATTTATCATTGGGCTAGTTCAGTCGTTTATTAGGCCCATAAACGGCCCAAGTGGCCCACCGAAGTACAAGCCGGCTTTAAATTAGGGTTTCTCACTATATATTGTAATCCGCAGCCTTTGCCTCCAGAACGTCGTCGATCCTGTCATTTGTTTCGTTTGCTTTGAGGCCAGTCTTGTTCTGTATCAGATCGATTAGCAGGTCTTCAACATGAGGGCGAAGGTAAGTGAATTTATTTATTTATTTATTTTTTTTTAATGAAATATTTATGTAAATATTGCTTGGTTCTCTTGTTGATTTTTGTTGTTGTTTGTTTGCGTTTTTGTTTCGATTTACCAGTGGAAGAAGAAGAGAATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAAAGATCCAAGTAGTTTGTGTCTTTTTTTAA

mRNA sequence

ATGGGTCTCCTTCAAACTCATTGGAAAACAACGACATCTCGTCGATTTGAGCTTCAATCTCGGCTTGCATGTAACCACCACCGCCTTGAGACGGCGGCGATGGCGATGGCGATTGTCTACTACTGGTTCTCTTGTTCTGTATCAGATCGATTAGCAGGTCTTCAACATGAGGGCGAAGTGGAAGAAGAAGAGAATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAAAGATCCAAGTAGTTTGTGTCTTTTTTTAA

Coding sequence (CDS)

ATGGGTCTCCTTCAAACTCATTGGAAAACAACGACATCTCGTCGATTTGAGCTTCAATCTCGGCTTGCATGTAACCACCACCGCCTTGAGACGGCGGCGATGGCGATGGCGATTGTCTACTACTGGTTCTCTTGTTCTGTATCAGATCGATTAGCAGGTCTTCAACATGAGGGCGAAGTGGAAGAAGAAGAGAATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGGCAAAGATCCAAGTAGTTTGTGTCTTTTTTTAA

Protein sequence

MGLLQTHWKTTTSRRFELQSRLACNHHRLETAAMAMAIVYYWFSCSVSDRLAGLQHEGEVEEEENEEIEEEAPKDEAKIQVVCVFF

Homology

[Close]

BLAST of Csor.00g119760 vs. NCBI nr
Match: KAG6602611.1 (hypothetical protein SDJN03_07844, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (440), Expect = 1.24e-54
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGLLQTHWKTTTSRRFELQSRLACNHHRLETAAMAMAIVYYWFSCSVSDRLAGLQHEGEV 60
          MGLLQTHWKTTTSRRFELQSRLACNHHRLETAAMAMAIVYYWFSCSVSDRLAGLQHEGEV
Sbjct: 1  MGLLQTHWKTTTSRRFELQSRLACNHHRLETAAMAMAIVYYWFSCSVSDRLAGLQHEGEV 60

Query: 61 EEEENEEIEEEAPKDEAKIQVVCVFF 86
          EEEENEEIEEEAPKDEAKIQVVCVFF
Sbjct: 61 EEEENEEIEEEAPKDEAKIQVVCVFF 86

The following BLAST results are available for this feature:

BLAST of Csor.00g119760 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g119760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602611.1	1.24e-54	100.00	hypothetical protein SDJN03_07844, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g119760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g119760 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g119760.m01	Csor.00g119760.m01	mRNA