Csor.00g110880.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g110880.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionSERF family protein
LocationCsor_Chr07: 2955250 .. 2956260 (-)
Sequence length234
RNA-Seq ExpressionCsor.00g110880.m01
SyntenyCsor.00g110880.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGGGGGAACGGGCAGAAAGCTAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTTCTAAGGGCGAGTTTTCTCTATAACTTTTCGCCTTTATTTCTTTTTCGGATTACTTTTACTGGTTTCTGAGTGAATTTCTTGAACTCTGTATAGTTATTTTGTTCTTGATATTTATTAAGCGGCGGCTCTGTTAGGGAGTGAAATCACTTAAATTGATTATCGTGCGAGAGAGAGAGCTATTGAGTTGATTTTATTAATCGGTTATTCGGGATAAATTTGAAGATTTTGATTGGTCTGTTGTTATCAGGAAGTCAGCTCGAATCGAACAAGAAAGCAATGTCTATTCAGGTATGTTTTGACAATGTTTGATGCTAATTTGTATGAAGATAGCTGAATTAGTTCTTATATTGATGCTAATTTATATGCCCATGTCGTCTTTTGTTTGTGTTTATAGGAATTGTTTCTTTTTTCTTCCGCTTGTACATTAGTTTCTTGCTTATTCTGTACAGTTTGATGTTTCAGAATTGTTTTTTTTTTTTTCCTTTTTCTTTTGAGCCACATTTACACATTCAATAGAAGAGTTTCTTCGATTCGATGGTCAGGGTACCTTGTATGTGAATGGAAGGATGGTGTCCAATTATTAAGTAAATCTTTCAGTTCTCTTCATGAACTTATCATTAGTATTGTAGACTATGAATTTTGTATCTGTAAAGCCTGCGATTTTCTGAGCCCTATGTTATTCTTGCACGTAGAGAATTCAAAAGAATGTTATAGGCAGTGGGTGCTACTGTTTTATGACGTTTACTCTTGATTTGTTCTTTATTAAGAACATTTACTCTGATTTGTTTCTTTGGTAAGAACATTTCCTATGAAACTGATTGCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACATCAGAGGTCAAATGCAGGGAACATGCGGAGGCTAAGCACCCAAAAGCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

mRNA sequence

ATGGGAGGGGGGAACGGGCAGAAAGCTAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTTCTAAGGGCGATCAGCTCGAATCGAACAAGAAAGCAATGTCTATTCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACATCAGAGGTCAAATGCAGGGAACATGCGGAGGCTAAGCACCCAAAAGCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

Coding sequence (CDS)

ATGGGAGGGGGGAACGGGCAGAAAGCTAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTTCTAAGGGCGATCAGCTCGAATCGAACAAGAAAGCAATGTCTATTCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACATCAGAGGTCAAATGCAGGGAACATGCGGAGGCTAAGCACCCAAAAGCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

Protein sequence

MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVYTCFPHLKK
Homology
[Close]
BLAST of Csor.00g110880.m01 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-30
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAS-KGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHA 60
          MGGGN QK+ MAR KN+EK KA+ KG QLE+NKKAMSIQCKVCMQTFICTTSEVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EAKHPKADVYTCFPHLKK 78
          EAKHPKADV  CFPHLKK
Sbjct: 61 EAKHPKADVVACFPHLKK 78

[Close]
BLAST of Csor.00g110880.m01 vs. NCBI nr
Match: KAG6594993.1 (hypothetical protein SDJN03_11546, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (392), Expect = 1.38e-47
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. NCBI nr
Match: XP_022963417.1 (uncharacterized protein At2g23090 [Cucurbita moschata] >XP_023003192.1 uncharacterized protein At2g23090 [Cucurbita maxima] >XP_023517196.1 uncharacterized protein At2g23090 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153 bits (386), Expect = 1.13e-46
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. NCBI nr
Match: XP_022133290.1 (uncharacterized protein At2g23090 [Momordica charantia])

HSP 1 Score: 150 bits (380), Expect = 9.34e-46
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAM+IQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMTIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPK+DVYTCFPHLKK
Sbjct: 61 AKHPKSDVYTCFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. NCBI nr
Match: XP_011074376.1 (uncharacterized protein At2g23090 [Sesamum indicum])

HSP 1 Score: 149 bits (375), Expect = 5.41e-45
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMARE+N+EK+KA+KG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKMKAAKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. NCBI nr
Match: XP_038882025.1 (uncharacterized protein At2g23090 [Benincasa hispida] >XP_038883651.1 uncharacterized protein At2g23090 [Benincasa hispida])

HSP 1 Score: 148 bits (374), Expect = 7.69e-45
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQK+KMAREKNMEKLKASKG QLE+NKKAMSIQCKVCMQTFICTT+EVKCREHAE
Sbjct: 1  MGGGNGQKSKMAREKNMEKLKASKGSQLEANKKAMSIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPK+DVYTCFPHLKK
Sbjct: 61 AKHPKSDVYTCFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. ExPASy TrEMBL
Match: A0A6J1KLS2 (uncharacterized protein At2g23090 OS=Cucurbita maxima OX=3661 GN=LOC111496881 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 5.49e-47
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. ExPASy TrEMBL
Match: A0A6J1HF74 (uncharacterized protein At2g23090 OS=Cucurbita moschata OX=3662 GN=LOC111463629 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 5.49e-47
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. ExPASy TrEMBL
Match: A0A6J1BUU7 (uncharacterized protein At2g23090 OS=Momordica charantia OX=3673 GN=LOC111005911 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 4.52e-46
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAM+IQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMTIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPK+DVYTCFPHLKK
Sbjct: 61 AKHPKSDVYTCFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. ExPASy TrEMBL
Match: A0A6I9SXS1 (uncharacterized protein At2g23090 OS=Sesamum indicum OX=4182 GN=LOC105159121 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 2.62e-45
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMARE+N+EK+KA+KG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKMKAAKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. ExPASy TrEMBL
Match: A0A7J0GH88 (Uncharacterized protein family SERF OS=Actinidia rufa OX=165716 GN=Acr_21g0007780 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 2.16e-44
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKN+EK KA+KG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNLEKSKAAKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVY CFPHLKK
Sbjct: 61 AKHPKADVYACFPHLKK 77

[Close]
BLAST of Csor.00g110880.m01 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-31
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0 

Query: 1  MGGGNGQKAKMAREKNMEKLKAS-KGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHA 60
          MGGGN QK+ MAR KN+EK KA+ KG QLE+NKKAMSIQCKVCMQTFICTTSEVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EAKHPKADVYTCFPHLKK 78
          EAKHPKADV  CFPHLKK
Sbjct: 61 EAKHPKADVVACFPHLKK 78

The following BLAST results are available for this feature:
BLAST of Csor.00g110880.m01 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O648184.6e-3084.62Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P... [more]
BLAST of Csor.00g110880.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594993.11.38e-47100.00hypothetical protein SDJN03_11546, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022963417.11.13e-4698.70uncharacterized protein At2g23090 [Cucurbita moschata] >XP_023003192.1 uncharact... [more]
XP_022133290.19.34e-4696.10uncharacterized protein At2g23090 [Momordica charantia][more]
XP_011074376.15.41e-4593.51uncharacterized protein At2g23090 [Sesamum indicum][more]
XP_038882025.17.69e-4593.51uncharacterized protein At2g23090 [Benincasa hispida] >XP_038883651.1 uncharacte... [more]
BLAST of Csor.00g110880.m01 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KLS25.49e-4798.70uncharacterized protein At2g23090 OS=Cucurbita maxima OX=3661 GN=LOC111496881 PE... [more]
A0A6J1HF745.49e-4798.70uncharacterized protein At2g23090 OS=Cucurbita moschata OX=3662 GN=LOC111463629 ... [more]
A0A6J1BUU74.52e-4696.10uncharacterized protein At2g23090 OS=Momordica charantia OX=3673 GN=LOC111005911... [more]
A0A6I9SXS12.62e-4593.51uncharacterized protein At2g23090 OS=Sesamum indicum OX=4182 GN=LOC105159121 PE=... [more]
A0A7J0GH882.16e-4493.51Uncharacterized protein family SERF OS=Actinidia rufa OX=165716 GN=Acr_21g000778... [more]
BLAST of Csor.00g110880.m01 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G23090.13.2e-3184.62Uncharacterised protein family SERF [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026939ZNF706/At2g23090 superfamilyGENE3D4.10.1050.10coord: 1..77
e-value: 1.4E-33
score: 117.1
IPR007513Uncharacterised protein family SERF, N-terminalPFAMPF044194F5coord: 3..35
e-value: 5.0E-6
score: 27.3
IPR039438At2g23090-like, zinc-binding domainPFAMPF12907zf-met2coord: 38..75
e-value: 8.7E-21
score: 73.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..28
NoneNo IPR availablePANTHERPTHR33788:SF14SUBFAMILY NOT NAMEDcoord: 1..77
NoneNo IPR availableSUPERFAMILY118359Expressed protein At2g23090/F21P24.15coord: 1..76
IPR039713At2g23090-likePANTHERPTHR33788OS07G0114300 PROTEINcoord: 1..77

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g110880Csor.00g110880gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g110880.m01.CDS03Csor.00g110880.m01.CDS03CDS
Csor.00g110880.m01.CDS02Csor.00g110880.m01.CDS02CDS
Csor.00g110880.m01.CDS01Csor.00g110880.m01.CDS01CDS


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g110880.m01.terminal01Csor.00g110880.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g110880.m01.stop_codon01Csor.00g110880.m01.stop_codon01stop_codon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g110880.m01.intron02Csor.00g110880.m01.intron02intron
Csor.00g110880.m01.intron01Csor.00g110880.m01.intron01intron


The following internal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g110880.m01.internal01Csor.00g110880.m01.internal01internal


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g110880.m01.initial01Csor.00g110880.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g110880.m01.start_codon01Csor.00g110880.m01.start_codon01start_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g110880.m01Csor.00g110880.m01-proteinpolypeptide