Csor.00g110880 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g110880
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	SERF family protein
Location	Csor_Chr07: 2955250 .. 2956260 (-)
RNA-Seq Expression	Csor.00g110880
Synteny	Csor.00g110880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGGGGGAACGGGCAGAAAGCTAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTTCTAAGGGCGAGTTTTCTCTATAACTTTTCGCCTTTATTTCTTTTTCGGATTACTTTTACTGGTTTCTGAGTGAATTTCTTGAACTCTGTATAGTTATTTTGTTCTTGATATTTATTAAGCGGCGGCTCTGTTAGGGAGTGAAATCACTTAAATTGATTATCGTGCGAGAGAGAGAGCTATTGAGTTGATTTTATTAATCGGTTATTCGGGATAAATTTGAAGATTTTGATTGGTCTGTTGTTATCAGGAAGTCAGCTCGAATCGAACAAGAAAGCAATGTCTATTCAGGTATGTTTTGACAATGTTTGATGCTAATTTGTATGAAGATAGCTGAATTAGTTCTTATATTGATGCTAATTTATATGCCCATGTCGTCTTTTGTTTGTGTTTATAGGAATTGTTTCTTTTTTCTTCCGCTTGTACATTAGTTTCTTGCTTATTCTGTACAGTTTGATGTTTCAGAATTGTTTTTTTTTTTTTCCTTTTTCTTTTGAGCCACATTTACACATTCAATAGAAGAGTTTCTTCGATTCGATGGTCAGGGTACCTTGTATGTGAATGGAAGGATGGTGTCCAATTATTAAGTAAATCTTTCAGTTCTCTTCATGAACTTATCATTAGTATTGTAGACTATGAATTTTGTATCTGTAAAGCCTGCGATTTTCTGAGCCCTATGTTATTCTTGCACGTAGAGAATTCAAAAGAATGTTATAGGCAGTGGGTGCTACTGTTTTATGACGTTTACTCTTGATTTGTTCTTTATTAAGAACATTTACTCTGATTTGTTTCTTTGGTAAGAACATTTCCTATGAAACTGATTGCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACATCAGAGGTCAAATGCAGGGAACATGCGGAGGCTAAGCACCCAAAAGCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

mRNA sequence

ATGGGAGGGGGGAACGGGCAGAAAGCTAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTTCTAAGGGCGATCAGCTCGAATCGAACAAGAAAGCAATGTCTATTCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACATCAGAGGTCAAATGCAGGGAACATGCGGAGGCTAAGCACCCAAAAGCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

Coding sequence (CDS)

ATGGGAGGGGGGAACGGGCAGAAAGCTAAGATGGCTCGCGAGAAGAACATGGAGAAGCTGAAAGCTTCTAAGGGCGATCAGCTCGAATCGAACAAGAAAGCAATGTCTATTCAGTGCAAGGTATGCATGCAAACCTTTATCTGCACCACATCAGAGGTCAAATGCAGGGAACATGCGGAGGCTAAGCACCCAAAAGCTGATGTCTATACTTGTTTCCCACATCTTAAAAAATGA

Protein sequence

MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVYTCFPHLKK

Homology

[Close]

BLAST of Csor.00g110880 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-30
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKAS-KGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHA 60
          MGGGN QK+ MAR KN+EK KA+ KG QLE+NKKAMSIQCKVCMQTFICTTSEVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EAKHPKADVYTCFPHLKK 78
          EAKHPKADV  CFPHLKK
Sbjct: 61 EAKHPKADVVACFPHLKK 78

[Close]

BLAST of Csor.00g110880 vs. NCBI nr
Match: KAG6594993.1 (hypothetical protein SDJN03_11546, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (392), Expect = 1.38e-47
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. NCBI nr
Match: XP_022963417.1 (uncharacterized protein At2g23090 [Cucurbita moschata] >XP_023003192.1 uncharacterized protein At2g23090 [Cucurbita maxima] >XP_023517196.1 uncharacterized protein At2g23090 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153 bits (386), Expect = 1.13e-46
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. NCBI nr
Match: XP_022133290.1 (uncharacterized protein At2g23090 [Momordica charantia])

HSP 1 Score: 150 bits (380), Expect = 9.34e-46
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAM+IQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMTIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPK+DVYTCFPHLKK
Sbjct: 61 AKHPKSDVYTCFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. NCBI nr
Match: XP_011074376.1 (uncharacterized protein At2g23090 [Sesamum indicum])

HSP 1 Score: 149 bits (375), Expect = 5.41e-45
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMARE+N+EK+KA+KG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKMKAAKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. NCBI nr
Match: XP_038882025.1 (uncharacterized protein At2g23090 [Benincasa hispida] >XP_038883651.1 uncharacterized protein At2g23090 [Benincasa hispida])

HSP 1 Score: 148 bits (374), Expect = 7.69e-45
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQK+KMAREKNMEKLKASKG QLE+NKKAMSIQCKVCMQTFICTT+EVKCREHAE
Sbjct: 1  MGGGNGQKSKMAREKNMEKLKASKGSQLEANKKAMSIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPK+DVYTCFPHLKK
Sbjct: 61 AKHPKSDVYTCFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. ExPASy TrEMBL
Match: A0A6J1KLS2 (uncharacterized protein At2g23090 OS=Cucurbita maxima OX=3661 GN=LOC111496881 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 5.49e-47
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. ExPASy TrEMBL
Match: A0A6J1HF74 (uncharacterized protein At2g23090 OS=Cucurbita moschata OX=3662 GN=LOC111463629 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 5.49e-47
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. ExPASy TrEMBL
Match: A0A6J1BUU7 (uncharacterized protein At2g23090 OS=Momordica charantia OX=3673 GN=LOC111005911 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 4.52e-46
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKNMEKLKASKG QLESNKKAM+IQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNMEKLKASKGSQLESNKKAMTIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPK+DVYTCFPHLKK
Sbjct: 61 AKHPKSDVYTCFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. ExPASy TrEMBL
Match: A0A6I9SXS1 (uncharacterized protein At2g23090 OS=Sesamum indicum OX=4182 GN=LOC105159121 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 2.62e-45
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMARE+N+EK+KA+KG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKMKAAKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVYTCFPHLKK
Sbjct: 61 AKHPKADVYTCFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. ExPASy TrEMBL
Match: A0A7J0GH88 (Uncharacterized protein family SERF OS=Actinidia rufa OX=165716 GN=Acr_21g0007780 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 2.16e-44
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKASKGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60
          MGGGNGQKAKMAREKN+EK KA+KG QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE
Sbjct: 1  MGGGNGQKAKMAREKNLEKSKAAKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAE 60

Query: 61 AKHPKADVYTCFPHLKK 77
          AKHPKADVY CFPHLKK
Sbjct: 61 AKHPKADVYACFPHLKK 77

[Close]

BLAST of Csor.00g110880 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-31
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MGGGNGQKAKMAREKNMEKLKAS-KGDQLESNKKAMSIQCKVCMQTFICTTSEVKCREHA 60
          MGGGN QK+ MAR KN+EK KA+ KG QLE+NKKAMSIQCKVCMQTFICTTSEVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EAKHPKADVYTCFPHLKK 78
          EAKHPKADV  CFPHLKK
Sbjct: 61 EAKHPKADVVACFPHLKK 78

The following BLAST results are available for this feature:

BLAST of Csor.00g110880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64818	4.6e-30	84.62	Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P...	[more]

BLAST of Csor.00g110880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594993.1	1.38e-47	100.00	hypothetical protein SDJN03_11546, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022963417.1	1.13e-46	98.70	uncharacterized protein At2g23090 [Cucurbita moschata] >XP_023003192.1 uncharact...	[more]
XP_022133290.1	9.34e-46	96.10	uncharacterized protein At2g23090 [Momordica charantia]	[more]
XP_011074376.1	5.41e-45	93.51	uncharacterized protein At2g23090 [Sesamum indicum]	[more]
XP_038882025.1	7.69e-45	93.51	uncharacterized protein At2g23090 [Benincasa hispida] >XP_038883651.1 uncharacte...	[more]

BLAST of Csor.00g110880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLS2	5.49e-47	98.70	uncharacterized protein At2g23090 OS=Cucurbita maxima OX=3661 GN=LOC111496881 PE...	[more]
A0A6J1HF74	5.49e-47	98.70	uncharacterized protein At2g23090 OS=Cucurbita moschata OX=3662 GN=LOC111463629 ...	[more]
A0A6J1BUU7	4.52e-46	96.10	uncharacterized protein At2g23090 OS=Momordica charantia OX=3673 GN=LOC111005911...	[more]
A0A6I9SXS1	2.62e-45	93.51	uncharacterized protein At2g23090 OS=Sesamum indicum OX=4182 GN=LOC105159121 PE=...	[more]
A0A7J0GH88	2.16e-44	93.51	Uncharacterized protein family SERF OS=Actinidia rufa OX=165716 GN=Acr_21g000778...	[more]

BLAST of Csor.00g110880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23090.1	3.2e-31	84.62	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 1..77 e-value: 1.4E-33 score: 117.1
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 3..35 e-value: 5.0E-6 score: 27.3
IPR039438	At2g23090-like, zinc-binding domain	PFAM	PF12907	zf-met2	coord: 38..75 e-value: 8.7E-21 score: 73.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..28
None	No IPR available	PANTHER	PTHR33788:SF14	SUBFAMILY NOT NAMED	coord: 1..77
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 1..76
IPR039713	At2g23090-like	PANTHER	PTHR33788	OS07G0114300 PROTEIN	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g110880.m01	Csor.00g110880.m01	mRNA