Csor.00g095760.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGGTAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTTGGCTAAGAGAGCTGCCCATGAAGCCAAGGAGGCTTCTGCTCAACCTCAACCTCAACCCCACAAGCGGAAGGTCTCTATTCGCAAAACAGGCAAGCTTTATTCATTTTTTATTGTTATTATCTTGCTGCTTCTTTGCAATTGGATTGATTATACTCTTCATTTGGCCATTTATTGCATTTGTTCATTGATAATCTAAGCCTGATAGTGTAACGGCCTAACCCCACTACTACCGGATATTGTTCTCTTTGGGCTTTCCTTCAAGATTTTTAAAATGCCTCTACTGAGAAGAGGTTACATTCTCCACTACTTATAAAGAATGTTTCATTCTCCTTCACAACTAATGTGAGATCAATCGACTCCAGGTTAAGTTAGAATTGGTAATTGGAAAGGGTCAGTCTTTCCGAGTAGCCTCAAAATTTGAAGTGTTGTTAGTAATTCGGTGGATGTGTTCCTTATTGTTTGTTTTTATACTACAAAACAGAGATTGTGTTAATTAGCTCCTTTTCTGCCATTTGTTTCAGTTAAAATTGGTCGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAACAGAGATCTTGGCTTTTTCAGGTATGGCTTTGTAGTTTATACGACCTCTTTGGTATCTGTTGAAGATGAGATTTCTTGGATATTAGCGGGTGCAACCTTTTGATAAAAAGTACCAATATCTTCTGTTTGCAGCTGAACCATATGAAATAATTGCATTTGTTCAAGGTATTATAGTCATATGAGATAATTGCATTCAAGGGATTATATCTTTGGATTTACAGCTGATCTTTAACTTTTCTATGAATGAGTACTTTTTGTTTTTAATCTTTTTAGTTTAATCTTGTTAACAACAAAGTAAATGGCTTCCAACTTTCAAGCAAACTTTTAACTTTTTATATTCAACATGAAAATTTGCAGTTGCAGTTGTATTTCAAATCCAAGCCACAACCTGTGCCTGCAGCCAACGGAACAGTGCCGCCACCACCACAAGCTCCACCGCCACCGCCACCTCCACCCCAGCAAGGTGTACCACCTAGAGTTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCATCTGTAATGGCCAATGGTCCTCCCAGGCCAATGCCTCCTGGTGGAGCTCCGCCGATACCCCCACCGCCTCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGTTCTCTGGTGAATGGACCACCCATGCCGCCGCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGGCAGCCGCCACCACCGCCACCCAATATGGGATAG ATGAGGGTAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTTGGCTAAGAGAGCTGCCCATGAAGCCAAGGAGGCTTCTGCTCAACCTCAACCTCAACCCCACAAGCGGAAGGTCTCTATTCGCAAAACAGTTAAAATTGGTCGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAACAGAGATCTTGGCTTTTTCAGTTGCAGTTGTATTTCAAATCCAAGCCACAACCTGTGCCTGCAGCCAACGGAACAGTGCCGCCACCACCACAAGCTCCACCGCCACCGCCACCTCCACCCCAGCAAGGTGTACCACCTAGAGTTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCATCTGTAATGGCCAATGGTCCTCCCAGGCCAATGCCTCCTGGTGGAGCTCCGCCGATACCCCCACCGCCTCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGTTCTCTGGTGAATGGACCACCCATGCCGCCGCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGGCAGCCGCCACCACCGCCACCCAATATGGGATAG ATGAGGGTAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTTGGCTAAGAGAGCTGCCCATGAAGCCAAGGAGGCTTCTGCTCAACCTCAACCTCAACCCCACAAGCGGAAGGTCTCTATTCGCAAAACAGTTAAAATTGGTCGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAACAGAGATCTTGGCTTTTTCAGTTGCAGTTGTATTTCAAATCCAAGCCACAACCTGTGCCTGCAGCCAACGGAACAGTGCCGCCACCACCACAAGCTCCACCGCCACCGCCACCTCCACCCCAGCAAGGTGTACCACCTAGAGTTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCATCTGTAATGGCCAATGGTCCTCCCAGGCCAATGCCTCCTGGTGGAGCTCCGCCGATACCCCCACCGCCTCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGTTCTCTGGTGAATGGACCACCCATGCCGCCGCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGGCAGCCGCCACCACCGCCACCCAATATGGGATAG MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPPPPPPNMG Homology
BLAST of Csor.00g095760.m01 vs. ExPASy Swiss-Prot
Match: Q9FLQ7 (Formin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=FH20 PE=2 SV=3) HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05 Identity = 61/128 (47.66%), Postives = 68/128 (53.12%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. ExPASy Swiss-Prot
Match: Q84ZL0 (Formin-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=FH5 PE=2 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05 Identity = 60/126 (47.62%), Postives = 64/126 (50.79%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. ExPASy Swiss-Prot
Match: Q62203 (Splicing factor 3A subunit 2 OS=Mus musculus OX=10090 GN=Sf3a2 PE=1 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 7.5e-05 Identity = 88/239 (36.82%), Postives = 104/239 (43.51%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. ExPASy Swiss-Prot
Match: Q54WH2 (Formin-A OS=Dictyostelium discoideum OX=44689 GN=forA PE=1 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 2.2e-04 Identity = 70/174 (40.23%), Postives = 80/174 (45.98%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. ExPASy Swiss-Prot
Match: Q6AXT8 (Splicing factor 3A subunit 2 OS=Rattus norvegicus OX=10116 GN=Sf3a2 PE=2 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 3.7e-04 Identity = 89/249 (35.74%), Postives = 104/249 (41.77%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. NCBI nr
Match: KAG6580632.1 (hypothetical protein SDJN03_20634, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 354 bits (909), Expect = 1.06e-122 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. NCBI nr
Match: XP_022934763.1 (formin-like protein 20 isoform X1 [Cucurbita moschata]) HSP 1 Score: 345 bits (884), Expect = 6.37e-119 Identity = 191/193 (98.96%), Postives = 191/193 (98.96%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. NCBI nr
Match: XP_022934764.1 (formin-like protein 20 isoform X2 [Cucurbita moschata]) HSP 1 Score: 328 bits (842), Expect = 1.45e-112 Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. NCBI nr
Match: KAG7017390.1 (hypothetical protein SDJN02_19255, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 265 bits (677), Expect = 9.29e-88 Identity = 158/193 (81.87%), Postives = 161/193 (83.42%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. NCBI nr
Match: XP_004137848.1 (splicing factor 3A subunit 2 [Cucumis sativus] >KGN59007.1 hypothetical protein Csa_002498 [Cucumis sativus]) HSP 1 Score: 242 bits (618), Expect = 2.47e-76 Identity = 163/264 (61.74%), Postives = 168/264 (63.64%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. ExPASy TrEMBL
Match: A0A6J1F8K3 (formin-like protein 20 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441844 PE=4 SV=1) HSP 1 Score: 345 bits (884), Expect = 3.08e-119 Identity = 191/193 (98.96%), Postives = 191/193 (98.96%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. ExPASy TrEMBL
Match: A0A6J1F3I1 (formin-like protein 20 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441844 PE=4 SV=1) HSP 1 Score: 328 bits (842), Expect = 7.00e-113 Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. ExPASy TrEMBL
Match: A0A0A0LEB1 (Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G743440 PE=3 SV=1) HSP 1 Score: 242 bits (618), Expect = 1.20e-76 Identity = 163/264 (61.74%), Postives = 168/264 (63.64%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. ExPASy TrEMBL
Match: A0A5D3DPC7 (Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002950 PE=3 SV=1) HSP 1 Score: 240 bits (613), Expect = 6.82e-76 Identity = 163/264 (61.74%), Postives = 167/264 (63.26%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. ExPASy TrEMBL
Match: A0A1S3B729 (splicing factor 3A subunit 2 OS=Cucumis melo OX=3656 GN=LOC103486522 PE=3 SV=1) HSP 1 Score: 240 bits (613), Expect = 6.82e-76 Identity = 163/264 (61.74%), Postives = 167/264 (63.26%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. TAIR 10
Match: AT2G32600.1 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 75.9 bits (185), Expect = 4.0e-14 Identity = 79/202 (39.11%), Postives = 87/202 (43.07%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. TAIR 10
Match: AT5G07740.1 (actin binding ) HSP 1 Score: 51.6 bits (122), Expect = 8.2e-07 Identity = 61/128 (47.66%), Postives = 68/128 (53.12%), Query Frame = 0
BLAST of Csor.00g095760.m01 vs. TAIR 10
Match: AT1G61080.1 (Hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 46.2 bits (108), Expect = 3.4e-05 Identity = 61/138 (44.20%), Postives = 66/138 (47.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|