Csor.00g095760 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g095760
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	splicing factor 3A subunit 2
Location	Csor_Chr14: 1053205 .. 1054554 (+)
RNA-Seq Expression	Csor.00g095760
Synteny	Csor.00g095760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTTGGCTAAGAGAGCTGCCCATGAAGCCAAGGAGGCTTCTGCTCAACCTCAACCTCAACCCCACAAGCGGAAGGTCTCTATTCGCAAAACAGGCAAGCTTTATTCATTTTTTATTGTTATTATCTTGCTGCTTCTTTGCAATTGGATTGATTATACTCTTCATTTGGCCATTTATTGCATTTGTTCATTGATAATCTAAGCCTGATAGTGTAACGGCCTAACCCCACTACTACCGGATATTGTTCTCTTTGGGCTTTCCTTCAAGATTTTTAAAATGCCTCTACTGAGAAGAGGTTACATTCTCCACTACTTATAAAGAATGTTTCATTCTCCTTCACAACTAATGTGAGATCAATCGACTCCAGGTTAAGTTAGAATTGGTAATTGGAAAGGGTCAGTCTTTCCGAGTAGCCTCAAAATTTGAAGTGTTGTTAGTAATTCGGTGGATGTGTTCCTTATTGTTTGTTTTTATACTACAAAACAGAGATTGTGTTAATTAGCTCCTTTTCTGCCATTTGTTTCAGTTAAAATTGGTCGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAACAGAGATCTTGGCTTTTTCAGGTATGGCTTTGTAGTTTATACGACCTCTTTGGTATCTGTTGAAGATGAGATTTCTTGGATATTAGCGGGTGCAACCTTTTGATAAAAAGTACCAATATCTTCTGTTTGCAGCTGAACCATATGAAATAATTGCATTTGTTCAAGGTATTATAGTCATATGAGATAATTGCATTCAAGGGATTATATCTTTGGATTTACAGCTGATCTTTAACTTTTCTATGAATGAGTACTTTTTGTTTTTAATCTTTTTAGTTTAATCTTGTTAACAACAAAGTAAATGGCTTCCAACTTTCAAGCAAACTTTTAACTTTTTATATTCAACATGAAAATTTGCAGTTGCAGTTGTATTTCAAATCCAAGCCACAACCTGTGCCTGCAGCCAACGGAACAGTGCCGCCACCACCACAAGCTCCACCGCCACCGCCACCTCCACCCCAGCAAGGTGTACCACCTAGAGTTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCATCTGTAATGGCCAATGGTCCTCCCAGGCCAATGCCTCCTGGTGGAGCTCCGCCGATACCCCCACCGCCTCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGTTCTCTGGTGAATGGACCACCCATGCCGCCGCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGGCAGCCGCCACCACCGCCACCCAATATGGGATAG

mRNA sequence

ATGAGGGTAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTTGGCTAAGAGAGCTGCCCATGAAGCCAAGGAGGCTTCTGCTCAACCTCAACCTCAACCCCACAAGCGGAAGGTCTCTATTCGCAAAACAGTTAAAATTGGTCGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAACAGAGATCTTGGCTTTTTCAGTTGCAGTTGTATTTCAAATCCAAGCCACAACCTGTGCCTGCAGCCAACGGAACAGTGCCGCCACCACCACAAGCTCCACCGCCACCGCCACCTCCACCCCAGCAAGGTGTACCACCTAGAGTTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCATCTGTAATGGCCAATGGTCCTCCCAGGCCAATGCCTCCTGGTGGAGCTCCGCCGATACCCCCACCGCCTCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGTTCTCTGGTGAATGGACCACCCATGCCGCCGCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGGCAGCCGCCACCACCGCCACCCAATATGGGATAG

Coding sequence (CDS)

ATGAGGGTAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTTGGCTAAGAGAGCTGCCCATGAAGCCAAGGAGGCTTCTGCTCAACCTCAACCTCAACCCCACAAGCGGAAGGTCTCTATTCGCAAAACAGTTAAAATTGGTCGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAACAGAGATCTTGGCTTTTTCAGTTGCAGTTGTATTTCAAATCCAAGCCACAACCTGTGCCTGCAGCCAACGGAACAGTGCCGCCACCACCACAAGCTCCACCGCCACCGCCACCTCCACCCCAGCAAGGTGTACCACCTAGAGTTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCATCTGTAATGGCCAATGGTCCTCCCAGGCCAATGCCTCCTGGTGGAGCTCCGCCGATACCCCCACCGCCTCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGTTCTCTGGTGAATGGACCACCCATGCCGCCGCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGGCAGCCGCCACCACCGCCACCCAATATGGGATAG

Protein sequence

MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPPPPPPNMG

Homology

[Close]

BLAST of Csor.00g095760 vs. ExPASy Swiss-Prot
Match: Q9FLQ7 (Formin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=FH20 PE=2 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 61/128 (47.66%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 82   PQPVPAANGTVPPPP-------QAPPPPPPPPQQGVPPRVPPPMP--GSLPPPP----SV 141
            P P P + G+ PPPP         PPPPPPPP  G PP  PPP P  GS PPPP    S 
Sbjct: 980  PPPPPPSYGSPPPPPPPPPSYGSPPPPPPPPPGYGSPPPPPPPPPSYGSPPPPPPPPFSH 1039

Query: 142  MANGPPRPMPP---GGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQP 194
            +++ PP P PP   GGAPP PPPPP+         P  +  G P PPPP   P  G   P
Sbjct: 1040 VSSIPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPP--PMHGGAPP 1099

[Close]

BLAST of Csor.00g095760 vs. ExPASy Swiss-Prot
Match: Q84ZL0 (Formin-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=FH5 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 60/126 (47.62%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 82   PQPVPAANGTVPPPP--------QAPPPPPPPP--QQGVPPRVPPPMPGSLPPPPSVMAN 141
            P P+PAA    PPPP         APPPPPPPP  + G PP  PPP     PPPP     
Sbjct: 1004 PPPLPAARFNAPPPPPPPPTTHFNAPPPPPPPPITRSGAPPSPPPPPSPPPPPPPPGARP 1063

Query: 142  GPPRPMPPGGA---PPIPPPPPVGNNTMANF-TPGSLVNGPPMPPPPQGFPGQGVRQPPP 194
            GPP P PP GA   PP PPPPP G  +      PG   + PP PPPP    G     PPP
Sbjct: 1064 GPPPPPPPPGARPGPPPPPPPPGGRPSAPPLPPPGGRASAPPPPPPPSTRLG---APPPP 1123

[Close]

BLAST of Csor.00g095760 vs. ExPASy Swiss-Prot
Match: Q62203 (Splicing factor 3A subunit 2 OS=Mus musculus OX=10090 GN=Sf3a2 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 7.5e-05
Identity = 88/239 (36.82%), Postives = 104/239 (43.51%), Query Frame = 0


Query: 18  LAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQRSWLFQLQ-- 77
           LA+RAA EAKEA AQP P+  + KV ++K VKIGRPGY+VTKQ D+E  Q+S LFQ+   
Sbjct: 82  LARRAAKEAKEAPAQPAPE--QVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYP 141

Query: 78  ---------------------------------------LYFKSKPQPVPAANGTV---- 137
                                                  + FK   + +  A G      
Sbjct: 142 EIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFFFLQ 201

Query: 138 --------PPPPQAP--PP----PPPPPQQGVPPRVPPPMPGSLPPPPSVMANGPPRPMP 194
                   P PP  P  PP    PPPP   G+PPR  PP+P +LPPPP      PP P P
Sbjct: 202 FHFKMEKPPAPPSLPAGPPGVKRPPPPLMNGLPPR--PPLPDALPPPPPGGLPLPPMP-P 261

[Close]

BLAST of Csor.00g095760 vs. ExPASy Swiss-Prot
Match: Q54WH2 (Formin-A OS=Dictyostelium discoideum OX=44689 GN=forA PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-04
Identity = 70/174 (40.23%), Postives = 80/174 (45.98%), Query Frame = 0


Query: 39  KRKVSIRK-----TVKIGRPGYRVTKQFDSETKQ-RSWLFQLQL-YFKSKPQPVPAANGT 98
           K KV I K     T K       + K+ D E  Q ++ + QL+L    +KP    A+   
Sbjct: 589 KEKVEIIKKNEELTTKQLEEQINIAKKKDEEINQLKALVEQLKLTQGTAKPDSAAASTSV 648

Query: 99  VPPPP--------QAPPPPPPPPQQG----VPPRVPPPMPGSLPPPPSVMANGPPRPMPP 158
            PPPP          PPPPPPPP  G     PP  PPPM G  PPPP      PP P   
Sbjct: 649 APPPPPPPMTGGGAPPPPPPPPPMTGGGGPPPPPPPPPMTGGGPPPP------PPPPPMT 708

Query: 159 GGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPPPPPPNMG 194
           GG PP PPPPP G        PG+   GPP PPPP G      + PPPPP   G
Sbjct: 709 GGGPPPPPPPPGGGPPPPPPPPGAKAGGPPPPPPPFG------KGPPPPPGGFG 750

[Close]

BLAST of Csor.00g095760 vs. ExPASy Swiss-Prot
Match: Q6AXT8 (Splicing factor 3A subunit 2 OS=Rattus norvegicus OX=10116 GN=Sf3a2 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-04
Identity = 89/249 (35.74%), Postives = 104/249 (41.77%), Query Frame = 0


Query: 18  LAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQRSWLFQLQ-- 77
           LA+RAA EAKEA AQP P+  K KV ++K VKIGRPGY+VTKQ D+E  Q+S LFQ+   
Sbjct: 82  LARRAAKEAKEAPAQPAPE--KVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLFQIDYP 141

Query: 78  ---------------------------------------LYFKSKPQPVPAANGTV---- 137
                                                  + FK   + +  A G      
Sbjct: 142 EIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHW 201

Query: 138 ------------------PPPPQAP--PP----PPPPPQQGVPPRVPPPMPGSLPPPPSV 194
                             P PP  P  PP    PPPP   G+PPR  PP+P +LPPPP  
Sbjct: 202 NRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNGLPPR--PPLPDALPPPPPG 261

[Close]

BLAST of Csor.00g095760 vs. NCBI nr
Match: KAG6580632.1 (hypothetical protein SDJN03_20634, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354 bits (909), Expect = 1.06e-122
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQ 60
           MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQ
Sbjct: 1   MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQ 60

Query: 61  FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG 120
           FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG
Sbjct: 61  FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG 120

Query: 121 SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ 180
           SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ
Sbjct: 121 SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ 180

Query: 181 GVRQPPPPPPNMG 193
           GVRQPPPPPPNMG
Sbjct: 181 GVRQPPPPPPNMG 193

[Close]

BLAST of Csor.00g095760 vs. NCBI nr
Match: XP_022934763.1 (formin-like protein 20 isoform X1 [Cucurbita moschata])

HSP 1 Score: 345 bits (884), Expect = 6.37e-119
Identity = 191/193 (98.96%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQ 60
           MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQP  HKRKVSIRKTVKIGRPGYRVTKQ
Sbjct: 1   MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQP--HKRKVSIRKTVKIGRPGYRVTKQ 60

Query: 61  FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG 120
           FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG
Sbjct: 61  FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG 120

Query: 121 SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ 180
           SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ
Sbjct: 121 SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ 180

Query: 181 GVRQPPPPPPNMG 193
           GVRQPPPPPPNMG
Sbjct: 181 GVRQPPPPPPNMG 191

[Close]

BLAST of Csor.00g095760 vs. NCBI nr
Match: XP_022934764.1 (formin-like protein 20 isoform X2 [Cucurbita moschata])

HSP 1 Score: 328 bits (842), Expect = 1.45e-112
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 7   RIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETK 66
           R+ RGSGIRLILAKRAAHEAKEASAQPQP  HKRKVSIRKTVKIGRPGYRVTKQFDSETK
Sbjct: 4   RLGRGSGIRLILAKRAAHEAKEASAQPQP--HKRKVSIRKTVKIGRPGYRVTKQFDSETK 63

Query: 67  QRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPGSLPPPP 126
           QRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPGSLPPPP
Sbjct: 64  QRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPGSLPPPP 123

Query: 127 SVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPP 186
           SVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPP
Sbjct: 124 SVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPP 183

Query: 187 PPPPNMG 193
           PPPPNMG
Sbjct: 184 PPPPNMG 188

[Close]

BLAST of Csor.00g095760 vs. NCBI nr
Match: KAG7017390.1 (hypothetical protein SDJN02_19255, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265 bits (677), Expect = 9.29e-88
Identity = 158/193 (81.87%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQ 60
           MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQP  HKRK ++                
Sbjct: 1   MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQP--HKRKFNLVNN------------- 60

Query: 61  FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG 120
                       +LQLYFKSKPQPVPAANGTVPPPPQAPPPPPP PQQGVPPRVPPPMPG
Sbjct: 61  ------------KLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPSPQQGVPPRVPPPMPG 120

Query: 121 SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ 180
           SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ
Sbjct: 121 SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ 166

Query: 181 GVRQPPPPPPNMG 193
           GVRQPPPPPPNMG
Sbjct: 181 GVRQPPPPPPNMG 166

[Close]

BLAST of Csor.00g095760 vs. NCBI nr
Match: XP_004137848.1 (splicing factor 3A subunit 2 [Cucumis sativus] >KGN59007.1 hypothetical protein Csa_002498 [Cucumis sativus])

HSP 1 Score: 242 bits (618), Expect = 2.47e-76
Identity = 163/264 (61.74%), Postives = 168/264 (63.64%), Query Frame = 0


Query: 18  LAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQRSWLFQ---- 77
           LAKRAA EAKEA AQPQP  HKRKVS+RKTVKIGRPGYRVTKQFDSETKQRS LFQ    
Sbjct: 80  LAKRAAREAKEAPAQPQP--HKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYP 139

Query: 78  ------------------------------------------------------------ 137
                                                                       
Sbjct: 140 EIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHW 199

Query: 138 --------LQLYFKSKPQ------PVPAANGTVP---------PPPQAPPPPPPPPQQGV 193
                   LQLYFKSKPQ      PVPAANGTVP         PPPQAPPPPPPPPQQG 
Sbjct: 200 DPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGA 259

[Close]

BLAST of Csor.00g095760 vs. ExPASy TrEMBL
Match: A0A6J1F8K3 (formin-like protein 20 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441844 PE=4 SV=1)

HSP 1 Score: 345 bits (884), Expect = 3.08e-119
Identity = 191/193 (98.96%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQ 60
           MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQP  HKRKVSIRKTVKIGRPGYRVTKQ
Sbjct: 1   MRVITWRIRRGSGIRLILAKRAAHEAKEASAQPQP--HKRKVSIRKTVKIGRPGYRVTKQ 60

Query: 61  FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG 120
           FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG
Sbjct: 61  FDSETKQRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPG 120

Query: 121 SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ 180
           SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ
Sbjct: 121 SLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQ 180

Query: 181 GVRQPPPPPPNMG 193
           GVRQPPPPPPNMG
Sbjct: 181 GVRQPPPPPPNMG 191

[Close]

BLAST of Csor.00g095760 vs. ExPASy TrEMBL
Match: A0A6J1F3I1 (formin-like protein 20 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441844 PE=4 SV=1)

HSP 1 Score: 328 bits (842), Expect = 7.00e-113
Identity = 183/187 (97.86%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 7   RIRRGSGIRLILAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETK 66
           R+ RGSGIRLILAKRAAHEAKEASAQPQP  HKRKVSIRKTVKIGRPGYRVTKQFDSETK
Sbjct: 4   RLGRGSGIRLILAKRAAHEAKEASAQPQP--HKRKVSIRKTVKIGRPGYRVTKQFDSETK 63

Query: 67  QRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPGSLPPPP 126
           QRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPGSLPPPP
Sbjct: 64  QRSWLFQLQLYFKSKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMPGSLPPPP 123

Query: 127 SVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPP 186
           SVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPP
Sbjct: 124 SVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQPP 183

Query: 187 PPPPNMG 193
           PPPPNMG
Sbjct: 184 PPPPNMG 188

[Close]

BLAST of Csor.00g095760 vs. ExPASy TrEMBL
Match: A0A0A0LEB1 (Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G743440 PE=3 SV=1)

HSP 1 Score: 242 bits (618), Expect = 1.20e-76
Identity = 163/264 (61.74%), Postives = 168/264 (63.64%), Query Frame = 0


Query: 18  LAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQRSWLFQ---- 77
           LAKRAA EAKEA AQPQP  HKRKVS+RKTVKIGRPGYRVTKQFDSETKQRS LFQ    
Sbjct: 80  LAKRAAREAKEAPAQPQP--HKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYP 139

Query: 78  ------------------------------------------------------------ 137
                                                                       
Sbjct: 140 EIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHW 199

Query: 138 --------LQLYFKSKPQ------PVPAANGTVP---------PPPQAPPPPPPPPQQGV 193
                   LQLYFKSKPQ      PVPAANGTVP         PPPQAPPPPPPPPQQG 
Sbjct: 200 DPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGA 259

[Close]

BLAST of Csor.00g095760 vs. ExPASy TrEMBL
Match: A0A5D3DPC7 (Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002950 PE=3 SV=1)

HSP 1 Score: 240 bits (613), Expect = 6.82e-76
Identity = 163/264 (61.74%), Postives = 167/264 (63.26%), Query Frame = 0


Query: 18  LAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQRSWLFQ---- 77
           LAKRAA EAKEA AQPQP  HKRKVS+RKTVKIGRPGYRVTKQFDSETKQRS LFQ    
Sbjct: 80  LAKRAAREAKEAPAQPQP--HKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYP 139

Query: 78  ------------------------------------------------------------ 137
                                                                       
Sbjct: 140 EIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHW 199

Query: 138 --------LQLYFKSKPQ------PVPAANGTVP---------PPPQAPPPPPPPPQQGV 193
                   LQLYFKSKPQ      PVPAANGTVP         PPPQAPPPPPPPPQQG 
Sbjct: 200 DPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGA 259

[Close]

BLAST of Csor.00g095760 vs. ExPASy TrEMBL
Match: A0A1S3B729 (splicing factor 3A subunit 2 OS=Cucumis melo OX=3656 GN=LOC103486522 PE=3 SV=1)

HSP 1 Score: 240 bits (613), Expect = 6.82e-76
Identity = 163/264 (61.74%), Postives = 167/264 (63.26%), Query Frame = 0


Query: 18  LAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQRSWLFQ---- 77
           LAKRAA EAKEA AQPQP  HKRKVS+RKTVKIGRPGYRVTKQFDSETKQRS LFQ    
Sbjct: 80  LAKRAAREAKEAPAQPQP--HKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYP 139

Query: 78  ------------------------------------------------------------ 137
                                                                       
Sbjct: 140 EIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHW 199

Query: 138 --------LQLYFKSKPQ------PVPAANGTVP---------PPPQAPPPPPPPPQQGV 193
                   LQLYFKSKPQ      PVPAANGTVP         PPPQAPPPPPPPPQQG 
Sbjct: 200 DPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGA 259

[Close]

BLAST of Csor.00g095760 vs. TAIR 10
Match: AT2G32600.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-14
Identity = 79/202 (39.11%), Postives = 87/202 (43.07%), Query Frame = 0


Query: 18  LAKRAAHEAKEASAQPQPQPHKRKVSIRKTVKIGRPGYRVTKQFDSETKQRSWLFQ---- 77
           LAKRAA EAK+A  +PQP   KR VS+R+TVKIGRPGYRVTKQ+D E +QRS LFQ    
Sbjct: 80  LAKRAAREAKDAPTKPQPL--KRNVSVRRTVKIGRPGYRVTKQYDPELQQRSLLFQIEYP 139

Query: 78  ------------------------------------------------------------ 137
                                                                       
Sbjct: 140 EIEDNIKPRHRFMSSYEQKVQPYDKSYQYLLFAAEPYEIIAFKVPSTEVDKSTPKFFSHW 199

Query: 138 --------LQLYFK------SKPQPVPAANGTVPPPPQAPPPPPPPPQQGVPPRVPPPMP 142
                   LQ+YFK      +KPQ    ANG        PPPPPPPP Q  PP  PPP  
Sbjct: 200 DPDSKMFTLQVYFKPTKPEPNKPQSAVGANG-------LPPPPPPPPHQAQPP--PPPPS 259

[Close]

BLAST of Csor.00g095760 vs. TAIR 10
Match: AT5G07740.1 (actin binding )

HSP 1 Score: 51.6 bits (122), Expect = 8.2e-07
Identity = 61/128 (47.66%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 82   PQPVPAANGTVPPPP-------QAPPPPPPPPQQGVPPRVPPPMP--GSLPPPP----SV 141
            P P P + G+ PPPP         PPPPPPPP  G PP  PPP P  GS PPPP    S 
Sbjct: 980  PPPPPPSYGSPPPPPPPPPSYGSPPPPPPPPPGYGSPPPPPPPPPSYGSPPPPPPPPFSH 1039

Query: 142  MANGPPRPMPP---GGAPPIPPPPPVGNNTMANFTPGSLVNGPPMPPPPQGFPGQGVRQP 194
            +++ PP P PP   GGAPP PPPPP+         P  +  G P PPPP   P  G   P
Sbjct: 1040 VSSIPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPP--PMHGGAPP 1099

[Close]

BLAST of Csor.00g095760 vs. TAIR 10
Match: AT1G61080.1 (Hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-05
Identity = 61/138 (44.20%), Postives = 66/138 (47.83%), Query Frame = 0


Query: 82  PQPVPAA----NGTVPPPP---------QAPPPPPPPPQQGVPPRVPPPMPGSL------ 141
           P P P A     G+ PPPP          APPPPPPPP+  V P  PPP PG+       
Sbjct: 493 PPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPP 552

Query: 142 PPPPSVMANGPPRPMPP-GGAPPIPPPPPVGNNTMANFTPG----SLVNG--PPMPPPPQ 194
           PPPP   A  PP P PP     P PPP P+GN+      P      L NG  PP PPPP 
Sbjct: 553 PPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGPPPPPPPMPLANGATPPPPPPPM 612

The following BLAST results are available for this feature:

BLAST of Csor.00g095760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLQ7	1.2e-05	47.66	Formin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=FH20 PE=2 SV=3	[more]
Q84ZL0	1.5e-05	47.62	Formin-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=FH5 PE=2 SV=2	[more]
Q62203	7.5e-05	36.82	Splicing factor 3A subunit 2 OS=Mus musculus OX=10090 GN=Sf3a2 PE=1 SV=2	[more]
Q54WH2	2.2e-04	40.23	Formin-A OS=Dictyostelium discoideum OX=44689 GN=forA PE=1 SV=1	[more]
Q6AXT8	3.7e-04	35.74	Splicing factor 3A subunit 2 OS=Rattus norvegicus OX=10116 GN=Sf3a2 PE=2 SV=1	[more]

BLAST of Csor.00g095760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580632.1	1.06e-122	100.00	hypothetical protein SDJN03_20634, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022934763.1	6.37e-119	98.96	formin-like protein 20 isoform X1 [Cucurbita moschata]	[more]
XP_022934764.1	1.45e-112	97.86	formin-like protein 20 isoform X2 [Cucurbita moschata]	[more]
KAG7017390.1	9.29e-88	81.87	hypothetical protein SDJN02_19255, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004137848.1	2.47e-76	61.74	splicing factor 3A subunit 2 [Cucumis sativus] >KGN59007.1 hypothetical protein ...	[more]

BLAST of Csor.00g095760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8K3	3.08e-119	98.96	formin-like protein 20 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441844 ...	[more]
A0A6J1F3I1	7.00e-113	97.86	formin-like protein 20 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441844 ...	[more]
A0A0A0LEB1	1.20e-76	61.74	Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G743440...	[more]
A0A5D3DPC7	6.82e-76	61.74	Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3B729	6.82e-76	61.74	splicing factor 3A subunit 2 OS=Cucumis melo OX=3656 GN=LOC103486522 PE=3 SV=1	[more]

BLAST of Csor.00g095760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32600.1	4.0e-14	39.11	hydroxyproline-rich glycoprotein family protein	[more]
AT5G07740.1	8.2e-07	47.66	actin binding	[more]
AT1G61080.1	3.4e-05	44.20	Hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..193
None	No IPR available	PANTHER	PTHR23205	SPLICING FACTOR 3A SUBUNIT 2	coord: 18..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g095760.m01	Csor.00g095760.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005681	spliceosomal complex