Csor.00g091580.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g091580.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 2193831 .. 2194745 (-)
Sequence length396
RNA-Seq ExpressionCsor.00g091580.m01
SyntenyCsor.00g091580.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGACTTGGGTAATCTCTCACTCTCTGCATCTCTTACGCGCACTCGCTGCGCTAATCTCAAACCAGCCTTCATCCTTCTGATCTTTTGTCTTCAGTCATCTGCAATGAATCGGTTAAATATATGCCCAGTGACTCTATTTGGGACCAGTGGTTTTCATGTCCGCTCCCCATTGACGATGAGGTCGGTGGCAACTATGGGATTAGGGTTTCATGGGCCAGAGGAGATGCGTTGGACCGATCTAAAAGGAATTGCGGTGGGAAGACTTTGGAAGATCATGTGAAATCTTGGGTTCGGAGAAAGCTAGAGTCCGGCGTTCCCCAGTCTCGCTGTTCATTTCCATTTCTTGTAGGCGCTCGGAAAATGGTGATGTTTTCTGCCTGTTTTCTTTTTTCGTTTTACGTACTACGATACTGGACCCGGTAGATTCATCAACGTGGTGCTGGATTTAGTGTTTAGCATGTATTCATTCGTTGTTGTTTCGTTCTGCTTGATTCCAGCCGGGGGACTTCATTTTTATTTAACTTAACAGGGAATGAAGCTCTAGAAGACGTTTTTGAAACTGAGCCTAATGTTTTCGTGCAAGTATGATATTGGAGAAGTTCATATCCTTTGAGAAGTGCTTGGGGAGGAAATGATGTAGATGTTGCGCGTAGAAATTTATATTCGAGTAGCGTAGGACGAAAATTATTGATCCACTGAAGTTTATTTTATCAGAGTAAGTTAGTTTGCTTGTTCTTTCCATAAATATAGGTTCCATTTTAAAAGCAACTGTCAATGAGAGGAGTAATCCATGTTTATTATAAAGATTGTGAGGTCTCTTCACTTTTTGATGTGGAGTCCATGGTGCTTGATGTGCAATCTAAAATTTTATGCCAATTAAATTTGTCTTTCTACTGGCCGCTTCAGGTAG

mRNA sequence

ATGCCAGACTTGGGTAATCTCTCACTCTCTGCATCTCTTACGCGCACTCGCTGCGCTAATCTCAAACCAGCCTTCATCCTTCTGATCTTTTGTCTTCAGTCATCTGCAATGAATCGGTTAAATATATGCCCAGTGACTCTATTTGGGACCAGTGGTTTTCATGTCCGCTCCCCATTGACGATGAGGTCGGTGGCAACTATGGGATTAGGGTTTCATGGGCCAGAGGAGATGCGTTGGACCGATCTAAAAGGAATTGCGGTGGGAAGACTTTGGAAGATCATGCGCTCGGAAAATGGGAATGAAGCTCTAGAAGACGTTTTTGAAACTGAGCCTAATGTTTTCGTGCAACGTAGGACGAAAATTATTGATCCACTGAAGTTTATTTTATCAGAGTAG

Coding sequence (CDS)

ATGCCAGACTTGGGTAATCTCTCACTCTCTGCATCTCTTACGCGCACTCGCTGCGCTAATCTCAAACCAGCCTTCATCCTTCTGATCTTTTGTCTTCAGTCATCTGCAATGAATCGGTTAAATATATGCCCAGTGACTCTATTTGGGACCAGTGGTTTTCATGTCCGCTCCCCATTGACGATGAGGTCGGTGGCAACTATGGGATTAGGGTTTCATGGGCCAGAGGAGATGCGTTGGACCGATCTAAAAGGAATTGCGGTGGGAAGACTTTGGAAGATCATGCGCTCGGAAAATGGGAATGAAGCTCTAGAAGACGTTTTTGAAACTGAGCCTAATGTTTTCGTGCAACGTAGGACGAAAATTATTGATCCACTGAAGTTTATTTTATCAGAGTAG

Protein sequence

MPDLGNLSLSASLTRTRCANLKPAFILLIFCLQSSAMNRLNICPVTLFGTSGFHVRSPLTMRSVATMGLGFHGPEEMRWTDLKGIAVGRLWKIMRSENGNEALEDVFETEPNVFVQRRTKIIDPLKFILSE
Homology
[Close]
BLAST of Csor.00g091580.m01 vs. NCBI nr
Match: KAG6587798.1 (hypothetical protein SDJN03_16363, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264 bits (674), Expect = 6.74e-89
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MPDLGNLSLSASLTRTRCANLKPAFILLIFCLQSSAMNRLNICPVTLFGTSGFHVRSPLT 60
           MPDLGNLSLSASLTRTRCANLKPAFILLIFCLQSSAMNRLNICPVTLFGTSGFHVRSPLT
Sbjct: 1   MPDLGNLSLSASLTRTRCANLKPAFILLIFCLQSSAMNRLNICPVTLFGTSGFHVRSPLT 60

Query: 61  MRSVATMGLGFHGPEEMRWTDLKGIAVGRLWKIMRSENGNEALEDVFETEPNVFVQRRTK 120
           MRSVATMGLGFHGPEEMRWTDLKGIAVGRLWKIMRSENGNEALEDVFETEPNVFVQRRTK
Sbjct: 61  MRSVATMGLGFHGPEEMRWTDLKGIAVGRLWKIMRSENGNEALEDVFETEPNVFVQRRTK 120

Query: 121 IIDPLKFILSE 131
           IIDPLKFILSE
Sbjct: 121 IIDPLKFILSE 131

The following BLAST results are available for this feature:
BLAST of Csor.00g091580.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g091580.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6587798.16.74e-89100.00hypothetical protein SDJN03_16363, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g091580.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g091580.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g091580Csor.00g091580gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g091580.m01.CDS05Csor.00g091580.m01.CDS05CDS
Csor.00g091580.m01.CDS04Csor.00g091580.m01.CDS04CDS
Csor.00g091580.m01.CDS03Csor.00g091580.m01.CDS03CDS
Csor.00g091580.m01.CDS02Csor.00g091580.m01.CDS02CDS
Csor.00g091580.m01.CDS01Csor.00g091580.m01.CDS01CDS


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g091580.m01.terminal01Csor.00g091580.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g091580.m01.stop_codon01Csor.00g091580.m01.stop_codon01stop_codon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g091580.m01.intron04Csor.00g091580.m01.intron04intron
Csor.00g091580.m01.intron03Csor.00g091580.m01.intron03intron
Csor.00g091580.m01.intron02Csor.00g091580.m01.intron02intron
Csor.00g091580.m01.intron01Csor.00g091580.m01.intron01intron


The following internal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g091580.m01.internal03Csor.00g091580.m01.internal03internal
Csor.00g091580.m01.internal02Csor.00g091580.m01.internal02internal
Csor.00g091580.m01.internal01Csor.00g091580.m01.internal01internal


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g091580.m01.initial01Csor.00g091580.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g091580.m01.start_codon01Csor.00g091580.m01.start_codon01start_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g091580.m01Csor.00g091580.m01-proteinpolypeptide