Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAATCCCCCCAAGGGCTGCAGAACAAATTGATGGTAAGATCAGAGGAGGAGACACTGTCGACTGGTTTGGAAGAGGGGGGAAATTTTCAGGTCAACAATTCCGACGAGCCAATGGCTGACAGTGAAATCGGATCATTGGTGATCAGAGTACCGCATCGAAGCGGGTTGGAACTTAGAAAGGAGAAAGTAGAAGACCATAGCTTGAGAAGAAAGCGCCGAGGATTCTGA mRNA sequence ATGCAATCCCCCCAAGGGCTGCAGAACAAATTGATGGTAAGATCAGAGGAGGAGACACTGTCGACTGGTTTGGAAGAGGGGGGAAATTTTCAGGTCAACAATTCCGACGAGCCAATGGCTGACAGTGAAATCGGATCATTGGTGATCAGAGTACCGCATCGAAGCGGGTTGGAACTTAGAAAGGAGAAAGTAGAAGACCATAGCTTGAGAAGAAAGCGCCGAGGATTCTGA Coding sequence (CDS) ATGCAATCCCCCCAAGGGCTGCAGAACAAATTGATGGTAAGATCAGAGGAGGAGACACTGTCGACTGGTTTGGAAGAGGGGGGAAATTTTCAGGTCAACAATTCCGACGAGCCAATGGCTGACAGTGAAATCGGATCATTGGTGATCAGAGTACCGCATCGAAGCGGGTTGGAACTTAGAAAGGAGAAAGTAGAAGACCATAGCTTGAGAAGAAAGCGCCGAGGATTCTGA Protein sequence MQSPQGLQNKLMVRSEEETLSTGLEEGGNFQVNNSDEPMADSEIGSLVIRVPHRSGLELRKEKVEDHSLRRKRRGF
Homology
BLAST of Csor.00g087580.m01 vs. NCBI nr
Match: KAG6590460.1 (hypothetical protein SDJN03_15883, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 147 bits (372), Expect = 1.45e-44 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0
Query: 1 MQSPQGLQNKLMVRSEEETLSTGLEEGGNFQVNNSDEPMADSEIGSLVIRVPHRSGLELR 60
MQSPQGLQNKLMVRSEEETLSTGLEEGGNFQVNNSDEPMADSEIGSLVIRVPHRSGLELR
Sbjct: 1 MQSPQGLQNKLMVRSEEETLSTGLEEGGNFQVNNSDEPMADSEIGSLVIRVPHRSGLELR 60
Query: 61 KEKVEDHSLRRKRRGF 76
KEKVEDHSLRRKRRGF
Sbjct: 61 KEKVEDHSLRRKRRGF 76
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6590460.1 | 1.45e-44 | 100.00 | hypothetical protein SDJN03_15883, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..39 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g087580.m01.CDS01 | Csor.00g087580.m01.CDS01 | CDS |
The following single feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g087580.m01.single01 | Csor.00g087580.m01.single01 | single |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g087580.m01.stop_codon01 | Csor.00g087580.m01.stop_codon01 | stop_codon |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g087580.m01.start_codon01 | Csor.00g087580.m01.start_codon01 | start_codon |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g087580.m01 | Csor.00g087580.m01-protein | polypeptide |
|
