CsaV3_UNG230120.1 (mRNA) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACAGCTTCGATTTTGGCAGTAGAAGTTGTGGTGAGTTTCATGGCATTGGCTTTGAAGTTTGCTATGAATGCATTGAGCTAATTCTACGAATCCGTGGTGGAGTTTGGCTTCATTTCAGGTATTAAGTTACTGAAAACTGCCATTATTTTTTCCTGAATCATTTGCCCTTTCACAGTTAAAAGGCTTGGAGGTGTTGTAGATCATGTCGATGAACCACATGCCACTCAATTTTGAAATCATCTTCATTACCAGCTTTTATCCATAGGAATCAAAGGTACATGTCGAATCATTCTTTATGTCCATATCGAAGTGATTGTCAAATTCTAAGGGAAACATAGTGATGATGTATGGATGAGATAATTAAGAATTTTAGTGTCATAATATGGAAGTAAAAATGATAAACACAATGAGGAACGTCGTTTTCTAAGAGTTGAGCTTGCAAAGTTGGACGTTTTTGTGAGACGGATCGTAGTTGGATGTTAATTACATTATTTTTGCTATTTTTTTGTTTTTAATTTTACTTCAATTAAAACAGTTCCTTTAAAAATATATAGCGTTGGGGTTTCAAAGTTATTAGGTGAGATTTATGTTTATCAGTGTTTTTTCGAATTTGAATGAAATATCATGACAATTAGTGTCAAGTTAAACTAACTTTTTACTATTTTATTTAGAGCCATAGATGGGGTTAGGCTTTTGCGTCATAATTAATTTCCTACCATCAACTTTTCAACTAGTTGCCTTTATTTAAGTTGAAAGAACAAACTTAAATTTTTAATTTAGGAAAAAGATGATCGACAAATCAAAGAAAAAGGATTTTGATGCCAGAGGATTAAGACATGAGATTTCTCTAATCCCAAACAAGTTCAAATTTATCTTTTATCTTGTCAAAATTCTCCTAACAAGCTTAGTTAAATTTGAGTGTACTCTTTTTAAGAGATCGGTTTGTCCTACATATTTTCTTCAAGTTCTTTTTTTAAAAAAGAAAAGTTGTTAATAGTTAAAGAAATTTAGTCAAACAATGAACGAATGTTATCTCTTGAAAAAACACATTTTGATAGAGTATAAAAAACACCCCTTTTACCAGCTACTTTGAAAGAAACGTTTTGCTATTTGTTTTGATTATTTGTATTTATATAATTAACCAAAAAGTTAACCGCTTTGTTTATTGACTCCATATTCATCTTAAACCATTGATTGATCCAAGAGCTTAGATGAATATACCATTGATTGATCCAAGAGCTTAAAATGATAGAAGCAATTATTGCTTTTGGTATACAAAAATAAATTCAATCATGATGATGCTTACAATTATAAGTACGAAGTTTGGTGTTTGCCAACAACTTACAACTCTAACATTTTAATTAGTATCGCACGATAAGATATTACTTTCAAATGTTCAGTTTTAGTTTATATTTTCTTAATATATCTTAAAAGTTAGTATTTATTTTAAATCTTAAAACAAACTAATTTTTATTTACTGATTTTTGATAAATTTTGGAATAATATTCATATCTGTGTTTTCTTAACAAGGAGAATTAGAATTGAATTACAAAGAACCAGTTAGAGTTCTACAAGAGAGATAACTATATATTTTGCAATGTGCTTTAGAATTACAACTCGGAAATCTTTTATAGACCTTAGATATCAAACATAAATTAAATTAAGAAAAGTAACAGAAAATAGCAAATCAAATAGGACATACGACACCCTTTATCTGTTACGATTTTAAAAAGATTACAAACTAATAGAATAAATTAGATTGAACACGATTCCTTATCTAATAAGATTATGTTAAAATAATATTATTGTATCCTATTTATAATTTACAACAAAATTAAACATTAAAACTAAAAAATAACACCTAAAAATCTTCCTCTTGGACAAGAAGTCTCAAGTTCAAATTCCTACCCAACATTTAGTGCAATACCTTTGCAAAAAAGAAAAAATTCTAAAATAATTAATGTACTAATTTCCTATTTATGAAACTTTTGACTTTTTTTATTAACGAAACTTTTGACTTTTAGTATGTTTCATAAATAAATAAATAACTGAGACATCGATTACTTATTATACATAATAATTACAACAATAAATGTTTAAACACAAAAAAAGAAAAACTTGTACAATGTTATTTATGAAATCTAAAAGCAACTTTTCTTTTTCTTTAATAAAGTGATTTTATCAAAGAAATCTTTACGATGGAATCGAACATTTATACAATTAATATTAATATCATAAGATGTAATTTCGTTTGAAAAAAAAAACAAATTTTTAAATTTCATTTGAAAGCAATGATATGAAATTTCAGTAAGAACACTAAAATGCTTAAAATGTTTTGACCAATAAACCGAAGAAATAAGAAAGGTGAGAAGGACACAACAATGGAAGTTGATGGATTTATCCATTCTCCTTTTCATGGCAACTATTTCTCTATTTATAACAACTACTTCATAAGAAAGCTATCCATTGATCAAGAGGGAGATATTGGGGACAATGAAAGAAATTCTTTGCAATTACAACGCGATTTGTTGGGTTTTTCACAGTTAGTTGTAAGGTGAAGTAACTCGAATTAGACAGTGGAATTAAGACAGACGAGCTGATTGAATTATTTTTTCCTTGAGTAGAACCCATGTTTTGAGTTTTAAGTTTGGTAATCATAAAACAAGATTGCCTAATGGCCATGCAAAGACAACATCCATTTATGAGGAAGTTAGAACCCACCTACTTACCTTTTTTTCTTGCATCAGTAGGTCTTGTTGTCAGCATATCAAATCAACATGGCAATCAAACTTTAAATCTGCCCCCATCTGCCTGCCATCTAATCTTCTCATTTATTTACCAACTCCAAGCAGTAAGTAGCCTATAAAAAGGACAGAAGTTGAGGTTGAAATCCATATTATTACACTACAACAGTAAAAAAGTAAAATATCAAACCATGGGAGGATATGGTATGAGCATTATTACCGCTGCCGCTGTCAGCTACCTCATCATCCTTCATTTGCCAATTCATTGTAATGCGATTGTCAGAAGAGAAAACAATTTCATTCCCCAAGGAGATGCTGATCTTTTAGAATTTCCACTGAATTTAGAGTACCTAGAAGCAGAATTCTTCTTATATGGTTCTCTGGGATATGGTTTGGATAAAGTTGCACCAAATCTAACCATGGGAGGGCCACCTCCCATTGGTGCTAAAAGGGCTAAATTGGATCCTTTCATCAGGGACATCATATTGCAATTTGGCTACCAGGAAGTTGTCATTTGAGGTATTGTTTTTTTTCTCTTTTTCCAGTTGACATCCACTAATGACTTTTTCCTTTCATATGAGTCTCTGCAGGTCATTTCACATCACACAATTTATGCAGGGCAATTAAAACTACAGTCAAAGGATTTCCAAGGCCATTGCTAGACTTGAGTTCAGCGTCATTTGCCAAAGTGATGGATAAAGCATTTGGTCGTCAGTTGAAACCACATTTTGATCCTTACGCTAATGGCTTGAATTTCCTTCTCGCATCCTACCTGTTCCTTATGTTGGACTCACTGGCTATGTTGGAGCAAATCCAAGACTTGAATCTGCTGTCGCCAAGAAGGTATTCTAATAGAACCAAAAGAAAACTAGAATTATATTCCATTGTAAAAGATGAACTTGCAAGATAAACTCGAGTGTTTGAAAACTTACAAGATCACAACCAATTGAATTAGCGTCTAACGTCCTCCTTTCCTACTATCTTTATTTATAACCAAACTCCATAATGAAATCCTTAACTAATCACTAACATACTTTATAATATCCCTAAGAACGCTTAGTATTCCTATTATATTCCCTGAAATTCAAAGATATGTTTAATTCTTACATACACACATACACTGACCACAATTCTACGAGCCAATGTTTCAGCTTGTTGCAGGACTTCTGGGTGTTGAATCGGGTCAAGATGCAGTCATCAGAGCACTACTTTATCAACGTGCAGCAGAAAAGGTTGAACCATACGGAGTGACAGTGGCCGAGTTCACGGATCGCATTTCAGATCTGCGGAATAAGTTAGGACACGCAGGTATAAAAGATGAAGGCACTGTGGTACCCAAAAACGAGGGTGCTGAGGGTAAGATTACAGGGAACGTGCTTGCTGGAGATCAGGACTCACTCGCATATCCAAGAACCCCCAGGAGATTCTAA ATGGACAGCTTCGATTTTGGCAGTAGAAGTTGTGGTGAGTTTCATGGCATTGGCTTTGAAGTTTGCTATGAATGCATTGAGCTAATTCTACGAATCCGTGGTGGAGTTTGGCTTCATTTCAGTAAAAAAGTAAAATATCAAACCATGGGAGGATATGGTATGAGCATTATTACCGCTGCCGCTGTCAGCTACCTCATCATCCTTCATTTGCCAATTCATTGTAATGCGATTGTCAGAAGAGAAAACAATTTCATTCCCCAAGGAGATGCTGATCTTTTAGAATTTCCACTGAATTTAGAGTACCTAGAAGCAGAATTCTTCTTATATGGTTCTCTGGGATATGGTCATTTCACATCACACAATTTATGCAGGGCAATTAAAACTACAGTCAAAGGATTTCCAAGGCCATTGCTAGACTTGAGTTCAGCGTCATTTGCCAAAGTGATGGATAAAGCATTTGGTCGTCAGTTGAAACCACATTTTGATCCTTACGCTAATGGCTTGAATTTCCTTCTCGCATCCTACCTGTTCCTTATGTTGGACTCACTGGCTATGTTGGAGCAAATCCAAGACTTGAATCTGCTGTCGCCAAGAAGGTATTCTAATAGAACCAAAAGAAAACTAGAATTATATTCCATTCTTGTTGCAGGACTTCTGGGTGTTGAATCGGGTCAAGATGCAGTCATCAGAGCACTACTTTATCAACGTGCAGCAGAAAAGGTTGAACCATACGGAGTGACAGTGGCCGAGTTCACGGATCGCATTTCAGATCTGCGGAATAAGTTAGGACACGCAGGTATAAAAGATGAAGGCACTGTGGTACCCAAAAACGAGGGTGCTGAGGGTAAGATTACAGGGAACGTGCTTGCTGGAGATCAGGACTCACTCGCATATCCAAGAACCCCCAGGAGATTCTAA ATGGACAGCTTCGATTTTGGCAGTAGAAGTTGTGGTGAGTTTCATGGCATTGGCTTTGAAGTTTGCTATGAATGCATTGAGCTAATTCTACGAATCCGTGGTGGAGTTTGGCTTCATTTCAGTAAAAAAGTAAAATATCAAACCATGGGAGGATATGGTATGAGCATTATTACCGCTGCCGCTGTCAGCTACCTCATCATCCTTCATTTGCCAATTCATTGTAATGCGATTGTCAGAAGAGAAAACAATTTCATTCCCCAAGGAGATGCTGATCTTTTAGAATTTCCACTGAATTTAGAGTACCTAGAAGCAGAATTCTTCTTATATGGTTCTCTGGGATATGGTCATTTCACATCACACAATTTATGCAGGGCAATTAAAACTACAGTCAAAGGATTTCCAAGGCCATTGCTAGACTTGAGTTCAGCGTCATTTGCCAAAGTGATGGATAAAGCATTTGGTCGTCAGTTGAAACCACATTTTGATCCTTACGCTAATGGCTTGAATTTCCTTCTCGCATCCTACCTGTTCCTTATGTTGGACTCACTGGCTATGTTGGAGCAAATCCAAGACTTGAATCTGCTGTCGCCAAGAAGGTATTCTAATAGAACCAAAAGAAAACTAGAATTATATTCCATTCTTGTTGCAGGACTTCTGGGTGTTGAATCGGGTCAAGATGCAGTCATCAGAGCACTACTTTATCAACGTGCAGCAGAAAAGGTTGAACCATACGGAGTGACAGTGGCCGAGTTCACGGATCGCATTTCAGATCTGCGGAATAAGTTAGGACACGCAGGTATAAAAGATGAAGGCACTGTGGTACCCAAAAACGAGGGTGCTGAGGGTAAGATTACAGGGAACGTGCTTGCTGGAGATCAGGACTCACTCGCATATCCAAGAACCCCCAGGAGATTCTAA MDSFDFGSRSCGEFHGIGFEVCYECIELILRIRGGVWLHFSKKVKYQTMGGYGMSIITAAAVSYLIILHLPIHCNAIVRRENNFIPQGDADLLEFPLNLEYLEAEFFLYGSLGYGHFTSHNLCRAIKTTVKGFPRPLLDLSSASFAKVMDKAFGRQLKPHFDPYANGLNFLLASYLFLMLDSLAMLEQIQDLNLLSPRRYSNRTKRKLELYSILVAGLLGVESGQDAVIRALLYQRAAEKVEPYGVTVAEFTDRISDLRNKLGHAGIKDEGTVVPKNEGAEGKITGNVLAGDQDSLAYPRTPRRF* Homology
BLAST of CsaV3_UNG230120.1 vs. NCBI nr
Match: KAE8637111.1 (hypothetical protein CSA_004588 [Cucumis sativus]) HSP 1 Score: 617.8 bits (1592), Expect = 4.9e-173 Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. NCBI nr
Match: KAE8647149.1 (hypothetical protein Csa_021760 [Cucumis sativus]) HSP 1 Score: 392.5 bits (1007), Expect = 3.3e-105 Identity = 216/291 (74.23%), Postives = 221/291 (75.95%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. NCBI nr
Match: XP_004148796.2 (LOW QUALITY PROTEIN: desiccation-related protein PCC13-62 [Cucumis sativus]) HSP 1 Score: 386.0 bits (990), Expect = 3.1e-103 Identity = 213/288 (73.96%), Postives = 218/288 (75.69%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. NCBI nr
Match: XP_008458324.1 (PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo] >TYK02966.1 desiccation-related protein PCC13-62-like [Cucumis melo var. makuwa]) HSP 1 Score: 353.6 bits (906), Expect = 1.7e-93 Identity = 199/289 (68.86%), Postives = 207/289 (71.63%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. NCBI nr
Match: XP_038875467.1 (desiccation-related protein PCC13-62-like [Benincasa hispida]) HSP 1 Score: 323.6 bits (828), Expect = 1.9e-84 Identity = 185/289 (64.01%), Postives = 202/289 (69.90%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. ExPASy Swiss-Prot
Match: P22242 (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 5.4e-58 Identity = 134/282 (47.52%), Postives = 172/282 (60.99%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. ExPASy TrEMBL
Match: A0A0A0KF49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G324880 PE=4 SV=1) HSP 1 Score: 386.7 bits (992), Expect = 8.8e-104 Identity = 213/289 (73.70%), Postives = 219/289 (75.78%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. ExPASy TrEMBL
Match: A0A5D3BXK9 (Desiccation-related protein PCC13-62-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00500 PE=4 SV=1) HSP 1 Score: 353.6 bits (906), Expect = 8.3e-94 Identity = 199/289 (68.86%), Postives = 207/289 (71.63%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. ExPASy TrEMBL
Match: A0A1S3C876 (desiccation-related protein PCC13-62-like OS=Cucumis melo OX=3656 GN=LOC103497774 PE=4 SV=1) HSP 1 Score: 353.6 bits (906), Expect = 8.3e-94 Identity = 199/289 (68.86%), Postives = 207/289 (71.63%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. ExPASy TrEMBL
Match: A0A6J1H409 (desiccation-related protein PCC13-62-like OS=Cucurbita moschata OX=3662 GN=LOC111460222 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 4.4e-71 Identity = 160/288 (55.56%), Postives = 188/288 (65.28%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. ExPASy TrEMBL
Match: A0A6J1L2P1 (desiccation-related protein PCC13-62-like OS=Cucurbita maxima OX=3661 GN=LOC111499294 PE=4 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 7.5e-71 Identity = 162/288 (56.25%), Postives = 188/288 (65.28%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. TAIR 10
Match: AT1G47980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 214.5 bits (545), Expect = 1.2e-55 Identity = 128/248 (51.61%), Postives = 150/248 (60.48%), Query Frame = 0
BLAST of CsaV3_UNG230120.1 vs. TAIR 10
Match: AT3G62730.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 170.2 bits (430), Expect = 2.5e-42 Identity = 111/252 (44.05%), Postives = 133/252 (52.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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