CsaV3_7G023710.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G023710.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Chlorophyll a/b-binding family protein
Location	chr7: 12759480 .. 12759800 (-)
Sequence length	321
RNA-Seq Expression	CsaV3_7G023710.1
Synteny	CsaV3_7G023710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGACACAATAGTGAACCTACCATGGTTGGTACCTCCATAGCGCTGTTACAAGAGAGATTCAGACAATTGCAGAAAAACAAGCAAAGGAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCTAATAGGGTTGACGCCTCGATAATGCATTTAGAACCAAATGGCTCGTCGACCTCAAGAGATTTGGATTCCAATTCCCTCTCCCTTGGTTTGAACTTGGAGAATAATGCAGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGATGCCAGGTGACACCAAGTTTGAGCTTGGAAACTCATTCATG

mRNA sequence

ATGGGTAGACACAATAGTGAACCTACCATGGTTGGTACCTCCATAGCGCTGTTACAAGAGAGATTCAGACAATTGCAGAAAAACAAGCAAAGGAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCTAATAGGGTTGACGCCTCGATAATGCATTTAGAACCAAATGGCTCGTCGACCTCAAGAGATTTGGATTCCAATTCCCTCTCCCTTGGTTTGAACTTGGAGAATAATGCAGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGATGCCAGGTGACACCAAGTTTGAGCTTGGAAACTCATTCATG

Coding sequence (CDS)

ATGGGTAGACACAATAGTGAACCTACCATGGTTGGTACCTCCATAGCGCTGTTACAAGAGAGATTCAGACAATTGCAGAAAAACAAGCAAAGGAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCTAATAGGGTTGACGCCTCGATAATGCATTTAGAACCAAATGGCTCGTCGACCTCAAGAGATTTGGATTCCAATTCCCTCTCCCTTGGTTTGAACTTGGAGAATAATGCAGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGATGCCAGGTGACACCAAGTTTGAGCTTGGAAACTCATTCATG

Protein sequence

MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM

Homology

[Close]

BLAST of CsaV3_7G023710.1 vs. NCBI nr
Match: KAE8646145.1 (hypothetical protein Csa_016195, partial [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 108
           TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 107

[Close]

BLAST of CsaV3_7G023710.1 vs. NCBI nr
Match: KAA0048752.1 (hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583.1 hypothetical protein E5676_scaffold172G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 3.8e-40
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 108
           S T R LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFM
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFM 109

[Close]

BLAST of CsaV3_7G023710.1 vs. NCBI nr
Match: KAG6589104.1 (hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 70/95 (73.68%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVD-ASIMHLEPNGS 60
          MGRH+SE TM+GTSIALLQERFRQLQK+KQRRE+KELL+LL +SNRV+ +SIMHLE N S
Sbjct: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60

Query: 61 STSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSM 95
          S SRDL+ +SLSLGLN  ++AGKQV  DIHEAR++
Sbjct: 61 SNSRDLNPDSLSLGLN-SSSAGKQV--DIHEARAL 92

[Close]

BLAST of CsaV3_7G023710.1 vs. NCBI nr
Match: KAG6572236.1 (hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 64/99 (64.65%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           M RH+SEP +VGTSIALLQERFRQLQK K RRE+KE++ LL +SN +            S
Sbjct: 3   MSRHSSEPAIVGTSIALLQERFRQLQKEKVRREKKEVVKLLSDSNSL------------S 62

Query: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTK 100
           TSRDL  NSLSLGLNL  NAGKQV  D HE R MPGDTK
Sbjct: 63  TSRDLAFNSLSLGLNL-GNAGKQV--DSHEGRLMPGDTK 86

[Close]

BLAST of CsaV3_7G023710.1 vs. NCBI nr
Match: PRQ52543.1 (hypothetical protein RchiOBHm_Chr2g0156651 [Rosa chinensis])

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1  MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
          MGRH+S+P MV +SIALLQERFRQLQK K+RRE ++LL  L E+ RV  S  H EP   S
Sbjct: 1  MGRHSSDPIMVSSSIALLQERFRQLQKVKERREEQQLLQFLSETERVAPSTRHFEPARPS 60

Query: 61 TSRDL----------DSNSLSLGLNLENNAGKQVD 86
             D+            +SLSLGLNL+    KQVD
Sbjct: 61 FQSDMVLPLRPCTPAADSSLSLGLNLQ---PKQVD 92

[Close]

BLAST of CsaV3_7G023710.1 vs. ExPASy TrEMBL
Match: A0A0A0K617 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 108
           TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 107

[Close]

BLAST of CsaV3_7G023710.1 vs. ExPASy TrEMBL
Match: A0A5D3E685 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00780 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.8e-40
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 108
           S T R LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFM
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFM 109

[Close]

BLAST of CsaV3_7G023710.1 vs. ExPASy TrEMBL
Match: A0A2P6S1J5 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156651 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1  MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
          MGRH+S+P MV +SIALLQERFRQLQK K+RRE ++LL  L E+ RV  S  H EP   S
Sbjct: 1  MGRHSSDPIMVSSSIALLQERFRQLQKVKERREEQQLLQFLSETERVAPSTRHFEPARPS 60

Query: 61 TSRDL----------DSNSLSLGLNLENNAGKQVD 86
             D+            +SLSLGLNL+    KQVD
Sbjct: 61 FQSDMVLPLRPCTPAADSSLSLGLNLQ---PKQVD 92

[Close]

BLAST of CsaV3_7G023710.1 vs. ExPASy TrEMBL
Match: G7KEN3 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.4e-10
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL-EPNGS 60
          MGR +++PTMV +SIALLQERFRQL+K K+RRE K+LL LL   N   AS   L  PN  
Sbjct: 1  MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRLVVPNNR 60

Query: 61 STSRDLDSNSLSLGLNLENNAG 82
           T  D    SLSLGLNL +  G
Sbjct: 61 QTHHD----SLSLGLNLTSKQG 78

[Close]

BLAST of CsaV3_7G023710.1 vs. ExPASy TrEMBL
Match: A0A2Z6PF68 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_254380 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL-EPNGS 60
          MGR +++PTMV +SIALLQERFRQL+K K+RRE K+LL LL   +   AS   L  PN  
Sbjct: 1  MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSSESNTSASQQRLVVPNNR 60

Query: 61 STSRDLDSNSLSLGLNLENNAGKQVD 86
           T  D    SLSLGLNL +  G  ++
Sbjct: 61 QTHHD----SLSLGLNLTSKQGDHMN 82

The following BLAST results are available for this feature:

BLAST of CsaV3_7G023710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646145.1	2.4e-50	100.00	hypothetical protein Csa_016195, partial [Cucumis sativus]	[more]
KAA0048752.1	3.8e-40	86.24	hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583...	[more]
KAG6589104.1	5.0e-24	73.68	hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6572236.1	1.1e-18	64.65	hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PRQ52543.1	6.3e-11	52.63	hypothetical protein RchiOBHm_Chr2g0156651 [Rosa chinensis]	[more]

BLAST of CsaV3_7G023710.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G023710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K617	1.2e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1	[more]
A0A5D3E685	1.8e-40	86.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P6S1J5	3.1e-11	52.63	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156651 PE=4...	[more]
G7KEN3	4.4e-10	56.10	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1	[more]
A0A2Z6PF68	1.7e-09	52.33	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_254380 PE=4 SV...	[more]

BLAST of CsaV3_7G023710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..35
None	No IPR available	PANTHER	PTHR34570:SF12	EXPRESSED PROTEIN	coord: 1..100
None	No IPR available	PANTHER	PTHR34570	OS03G0593100 PROTEIN	coord: 1..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G023710	CsaV3_7G023710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G023710.1.exon1	CsaV3_7G023710.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G023710.1.cds1	CsaV3_7G023710.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G023710.1	CsaV3_7G023710.1-protein	polypeptide