CsaV3_7G023600.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G023600.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 12643142 .. 12643783 (-)
Sequence length	393
RNA-Seq Expression	CsaV3_7G023600.1
Synteny	CsaV3_7G023600.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCTGTGTACTATCAAAATTTTCAGGTTAAGAAATTTATCTTATCTGCTTTTGTTTTTTGCATCAGATCATATGGGTATCTCCAAGAAAAACATGTTGGTGTTTGTTGGTGTTCTTCTTATTAGCACAACTCTAATTGAAATTACAAAAGCAACGACGACAAGAACCAGAGATTATGGTCCTCTTGATCAAGGTGTGGAGATCGTATGTAGCCCAGAAGATCCAAGAGTTTTCAAACTACATTATGCAAATGATGAATCAAGTGAATATAATTCAGTTGATGATTGCAAAACTCTAAAAAGTAAGACCAATTTTAATGGCCAATCGCCAAATATGGCTCCTCAAAGCTCACAATCGCCAAATATGGCTCCTCAAAGCTCACAAGGAGTTTAAGGAGATAAAAATGTTGGTTTTCCTTCACCATATATGAATTAAATTCATGTGTATTCTTTATTATTTTTTAATGTTTTGTTCTTCCATGTGAGTTGCAATCTCACTAAATTAAATATCACAGTTCTTTATTTTATGATTTTTTTCTGACATTTTACTAAATTGTTTCCAGTTTATTTTATGTTTTGTTCGTATATGGAAACAATAACAACCATTAACCCTTGCATGGTATTGAATTTTCATCAAATCTGG

mRNA sequence

CAGCTGTGTACTATCAAAATTTTCAGGTTAAGAAATTTATCTTATCTGCTTTTGTTTTTTGCATCAGATCATATGGGTATCTCCAAGAAAAACATGTTGGTGTTTGTTGGTGTTCTTCTTATTAGCACAACTCTAATTGAAATTACAAAAGCAACGACGACAAGAACCAGAGATTATGGTCCTCTTGATCAAGGTGTGGAGATCGTATGTAGCCCAGAAGATCCAAGAGTTTTCAAACTACATTATGCAAATGATGAATCAAGTGAATATAATTCAGTTGATGATTGCAAAACTCTAAAAAGTAAGACCAATTTTAATGGCCAATCGCCAAATATGGCTCCTCAAAGCTCACAATCGCCAAATATGGCTCCTCAAAGCTCACAAGGAGTTTAA

Coding sequence (CDS)

CAGCTGTGTACTATCAAAATTTTCAGGTTAAGAAATTTATCTTATCTGCTTTTGTTTTTTGCATCAGATCATATGGGTATCTCCAAGAAAAACATGTTGGTGTTTGTTGGTGTTCTTCTTATTAGCACAACTCTAATTGAAATTACAAAAGCAACGACGACAAGAACCAGAGATTATGGTCCTCTTGATCAAGGTGTGGAGATCGTATGTAGCCCAGAAGATCCAAGAGTTTTCAAACTACATTATGCAAATGATGAATCAAGTGAATATAATTCAGTTGATGATTGCAAAACTCTAAAAAGTAAGACCAATTTTAATGGCCAATCGCCAAATATGGCTCCTCAAAGCTCACAATCGCCAAATATGGCTCCTCAAAGCTCACAAGGAGTTTAA

Protein sequence

QLCTIKIFRLRNLSYLLLFFASDHMGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYANDESSEYNSVDDCKTLKSKTNFNGQSPNMAPQSSQSPNMAPQSSQGV*

Homology

[Close]

BLAST of CsaV3_7G023600.1 vs. NCBI nr
Match: KAE8646139.1 (hypothetical protein Csa_016560, partial [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 7.9e-64
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   QLCTIKIFRLRNLSYLLLFFASDHMGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYG 60
           QLCTIKIFRLRNLSYLLLFFASDHMGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYG
Sbjct: 1   QLCTIKIFRLRNLSYLLLFFASDHMGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYG 60

Query: 61  PLDQGVEIVCSPEDPRVFKLHYANDESSEYNSVDDCKTLKSKTNFNGQSPNMAPQSSQSP 120
           PLDQGVEIVCSPEDPRVFKLHYANDESSEYNSVDDCKTLKSKTNFNGQSPNMAPQSSQSP
Sbjct: 61  PLDQGVEIVCSPEDPRVFKLHYANDESSEYNSVDDCKTLKSKTNFNGQSPNMAPQSSQSP 120

Query: 121 NMAPQSSQGV 131
           NMAPQSSQGV
Sbjct: 121 NMAPQSSQGV 130

[Close]

BLAST of CsaV3_7G023600.1 vs. NCBI nr
Match: KAA0036627.1 (hypothetical protein E6C27_scaffold191G001550 [Cucumis melo var. makuwa] >TYK03365.1 hypothetical protein E5676_scaffold2392G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 6.5e-26
Identity = 73/101 (72.28%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 32  MLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYANDESSEYN 91
           M+V VGVLLISTTLIEITKA T+R  +YG   QGVEIVCSPEDPRVFKLHYANDESSE+N
Sbjct: 1   MVVLVGVLLISTTLIEITKA-TSRIVNYG-APQGVEIVCSPEDPRVFKLHYANDESSEFN 60

Query: 92  SVDDCKTLKSKTNFNGQSPNMAPQS----SQSPNMAPQSSQ 129
           +VDDCKTL    NF G+S ++ PQS     QSPN+APQSSQ
Sbjct: 61  AVDDCKTLNRNLNFGGRSQDVTPQSPNVAPQSPNVAPQSSQ 99

[Close]

BLAST of CsaV3_7G023600.1 vs. NCBI nr
Match: XP_022159360.1 (uncharacterized protein LOC111025777 [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-04
Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 25 MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYAN 84
          M ISK +M +FVG+LL    +I+IT A  TR   Y PL   V   CSP  P + KLH AN
Sbjct: 1  MAISKGSMFIFVGILLYCMGMIDITNA--TRFIHYDPLRGDVSPGCSPTHPELCKLHSAN 60

Query: 85 DESSEYNSVDDCK 98
                 S+D C+
Sbjct: 61 PYKRGCTSIDRCR 71

[Close]

BLAST of CsaV3_7G023600.1 vs. ExPASy TrEMBL
Match: A0A0A0K7P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.8e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 25  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYAN 84
           MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYAN
Sbjct: 1   MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYAN 60

Query: 85  DESSEYNSVDDCKTLKSKTNFNGQSPNMAPQSSQSPNMAPQSSQGV 131
           DESSEYNSVDDCKTLKSKTNFNGQSPNMAPQSSQSPNMAPQSSQGV
Sbjct: 61  DESSEYNSVDDCKTLKSKTNFNGQSPNMAPQSSQSPNMAPQSSQGV 106

[Close]

BLAST of CsaV3_7G023600.1 vs. ExPASy TrEMBL
Match: A0A0A0K4C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.8e-29
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 25  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYAN 84
           M I+KKNM VFVG+LLISTTLIEITKA TTR+ +YG   QGVEIVCSPEDPRVF+LHYAN
Sbjct: 1   MDITKKNMFVFVGLLLISTTLIEITKA-TTRSMNYG-APQGVEIVCSPEDPRVFRLHYAN 60

Query: 85  DESSEYNSVDDCKTLKSKTNFNGQSPNMAPQSSQSPNMAPQSSQ 129
           DESSEYN+VDDC TLKS  NF+G+S N+ P  S S N+APQ+SQ
Sbjct: 61  DESSEYNAVDDCATLKSNLNFDGRSQNV-PAQSPSQNVAPQTSQ 101

[Close]

BLAST of CsaV3_7G023600.1 vs. ExPASy TrEMBL
Match: A0A5D3BWB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2392G00270 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 73/101 (72.28%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 32  MLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYANDESSEYN 91
           M+V VGVLLISTTLIEITKA T+R  +YG   QGVEIVCSPEDPRVFKLHYANDESSE+N
Sbjct: 1   MVVLVGVLLISTTLIEITKA-TSRIVNYG-APQGVEIVCSPEDPRVFKLHYANDESSEFN 60

Query: 92  SVDDCKTLKSKTNFNGQSPNMAPQS----SQSPNMAPQSSQ 129
           +VDDCKTL    NF G+S ++ PQS     QSPN+APQSSQ
Sbjct: 61  AVDDCKTLNRNLNFGGRSQDVTPQSPNVAPQSPNVAPQSSQ 99

[Close]

BLAST of CsaV3_7G023600.1 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.4e-04
Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 25 MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDYGPLDQGVEIVCSPEDPRVFKLHYAN 84
          M ISK +M +FVG+LL    +I+IT A  TR   Y PL   V   CSP  P + KLH AN
Sbjct: 1  MAISKGSMFIFVGILLYCMGMIDITNA--TRFIHYDPLRGDVSPGCSPTHPELCKLHSAN 60

Query: 85 DESSEYNSVDDCK 98
                 S+D C+
Sbjct: 61 PYKRGCTSIDRCR 71

The following BLAST results are available for this feature:

BLAST of CsaV3_7G023600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646139.1	7.9e-64	100.00	hypothetical protein Csa_016560, partial [Cucumis sativus]	[more]
KAA0036627.1	6.5e-26	72.28	hypothetical protein E6C27_scaffold191G001550 [Cucumis melo var. makuwa] >TYK033...	[more]
XP_022159360.1	9.2e-04	43.84	uncharacterized protein LOC111025777 [Momordica charantia]	[more]

BLAST of CsaV3_7G023600.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G023600.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7P8	1.8e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1	[more]
A0A0A0K4C8	1.8e-29	74.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1	[more]
A0A5D3BWB1	3.2e-26	72.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DYH7	4.4e-04	43.84	uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of CsaV3_7G023600.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..130

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G023600	CsaV3_7G023600	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G023600.1.exon1	CsaV3_7G023600.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G023600.1.cds1	CsaV3_7G023600.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G023600.1	CsaV3_7G023600.1-protein	polypeptide