CsaV3_7G022630.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G022630.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 11488826 .. 11489174 (-)
Sequence length234
RNA-Seq ExpressionCsaV3_7G022630.1
SyntenyCsaV3_7G022630.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATCTTCTTCAGCAACCTTAACGATGATCACAAGGCCAAAATCAACCCATTTAATTCAAACCATTCACGGTTGTCACCAGATTTAGATTTGGTCATATTTAATGGCCGTCAGAGTAAATGACAATCCTTGCGCCAATTGAATCTCTCTCACCACCACCAACGGAATCAATTTGTAAACCAAATGCAAAAAGTCTCGTTGCACCCAGAACAAACAGGATTCCACCGCAGCCATGATCTCCTCACACGCCCAACTCTGGATCAACCAGAGCTGCGACGACGATCGATTTCATTGGCTAGACCGACATGGGAGCACCGTAAATCAGACCGTTGATGTTTCTGGATAA

mRNA sequence

ATGTTTATCTTCTTCAGCAACCTTAACGATGATCACAAGGCCAAAATCAACCCATTTAATTCAAACCATTCACGGTTGTCACCAGATTTAGATTTGAACAAACAGGATTCCACCGCAGCCATGATCTCCTCACACGCCCAACTCTGGATCAACCAGAGCTGCGACGACGATCGATTTCATTGGCTAGACCGACATGGGAGCACCGTAAATCAGACCGTTGATGTTTCTGGATAA

Coding sequence (CDS)

ATGTTTATCTTCTTCAGCAACCTTAACGATGATCACAAGGCCAAAATCAACCCATTTAATTCAAACCATTCACGGTTGTCACCAGATTTAGATTTGAACAAACAGGATTCCACCGCAGCCATGATCTCCTCACACGCCCAACTCTGGATCAACCAGAGCTGCGACGACGATCGATTTCATTGGCTAGACCGACATGGGAGCACCGTAAATCAGACCGTTGATGTTTCTGGATAA

Protein sequence

MFIFFSNLNDDHKAKINPFNSNHSRLSPDLDLNKQDSTAAMISSHAQLWINQSCDDDRFHWLDRHGSTVNQTVDVSG*
Homology
[Close]
BLAST of CsaV3_7G022630.1 vs. NCBI nr
Match: KGN44258.1 (hypothetical protein Csa_016197 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 3.8e-37
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MFIFFSNLNDDHKAKINPFNSNHSRLSPDLDLNKQDSTAAMISSHAQLWINQSCDDDRFH 60
          MFIFFSNLNDDHKAKINPFNSNHSRLSPDLDLNKQDSTAAMISSHAQLWINQSCDDDRFH
Sbjct: 1  MFIFFSNLNDDHKAKINPFNSNHSRLSPDLDLNKQDSTAAMISSHAQLWINQSCDDDRFH 60

Query: 61 WLDRHGSTVNQTVDVSG 78
          WLDRHGSTVNQTVDVSG
Sbjct: 61 WLDRHGSTVNQTVDVSG 77

[Close]
BLAST of CsaV3_7G022630.1 vs. ExPASy TrEMBL
Match: A0A0A0K407 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G236260 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-37
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MFIFFSNLNDDHKAKINPFNSNHSRLSPDLDLNKQDSTAAMISSHAQLWINQSCDDDRFH 60
          MFIFFSNLNDDHKAKINPFNSNHSRLSPDLDLNKQDSTAAMISSHAQLWINQSCDDDRFH
Sbjct: 1  MFIFFSNLNDDHKAKINPFNSNHSRLSPDLDLNKQDSTAAMISSHAQLWINQSCDDDRFH 60

Query: 61 WLDRHGSTVNQTVDVSG 78
          WLDRHGSTVNQTVDVSG
Sbjct: 61 WLDRHGSTVNQTVDVSG 77

The following BLAST results are available for this feature:
BLAST of CsaV3_7G022630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44258.13.8e-37100.00hypothetical protein Csa_016197 [Cucumis sativus][more]
BLAST of CsaV3_7G022630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022630.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4071.8e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G236260 PE=4 SV=1[more]
BLAST of CsaV3_7G022630.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G022630CsaV3_7G022630gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G022630.1.exon2CsaV3_7G022630.1.exon2exon
CsaV3_7G022630.1.exon1CsaV3_7G022630.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G022630.1.cds2CsaV3_7G022630.1.cds2CDS
CsaV3_7G022630.1.cds1CsaV3_7G022630.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G022630.1CsaV3_7G022630.1-proteinpolypeptide