CsaV3_7G018760.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G018760.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 8729231 .. 8729996 (-)
Sequence length354
RNA-Seq ExpressionCsaV3_7G018760.1
SyntenyCsaV3_7G018760.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTTAATCACATTTGTTACCTTATTTATGTCGTATAGGTTGTTTATTTACCACTGGTTATTCTAATGTAAAATACGCAATATATCTTAATCAATAAAATATTGATTCACATGGCATCAGAGCCTTTAACCTAGGGTTACTATACAACTGTCGCCCCGTTCTCCCTCTAACGTGAAAATTGACGGCCGTGAAACCCACCGACGACAAAGTCCTCCATTCGTCGTTCTTCGTTCGGGCATCGTTCAGATCCATTCATGCATCTTCTTCTCTGTACATCGTCAGCCTCTAATTCACACAAGATCTCTGTGTTTCATTGTCCAAATCTAACCGTCCAGCCGACCATGAAACCCCTTGTTCTCCGTTGCACGTTGCAGCTCTGTGTGTTTCATTGTGCATATCTGACCGTCCAGTCAACCGCAAAACCCCTTGTTCTCCGTTGCACTTTACAGCTTTCGATTTTGTCGTCTTTGTTCATCGGCTTCTATCGTCTTCGTCCGCATCCGATGAGATTCATACGTTGCCGACACTCAGACTCGCTGACCCACAGAACTCAGATTCGTCGTATAGTTTTTGTTGTTGTACGCTCATATTTGTCTTTGTTCATTTAAGTTTATTCAGCGATTCACCAATCTAAAACTTGCCTCTGTCTGTTTATGACTACCAGTGTTGAACCGTCATCGCCTGTTCACACATTTGCTCCCTGATTTCCTTCTATCACTCGTACTCAATTGCTCATACGTCCCTTAAAATTCAGCTTCAATGGAGA

mRNA sequence

ATGCATCTTCTTCTCTGTACATCGTCAGCCTCTAATTCACACAAGATCTCTGTGTTTCATTGTCCAAATCTAACCGTCCAGCCGACCATGAAACCCCTTGTTCTCCGTTGCACGTTGCAGCTCTGTGTGTTTCATTGTGCATATCTGACCGTCCAGTCAACCGCAAAACCCCTTGTTCTCCGTTGCACTTTACAGCTTTCGATTTTGTCGTCTTTGTTCATCGGCTTCTATCGTCTTCGTCCGCATCCGATGAGATTCATACGTTGCCGACACTCAGACTCGCTGACCCACAGAACTCAGATTCGTCGTATAGTTTTTGTTGTTGTACGCTCATATTTGTCTTTGTTCATTTAA

Coding sequence (CDS)

ATGCATCTTCTTCTCTGTACATCGTCAGCCTCTAATTCACACAAGATCTCTGTGTTTCATTGTCCAAATCTAACCGTCCAGCCGACCATGAAACCCCTTGTTCTCCGTTGCACGTTGCAGCTCTGTGTGTTTCATTGTGCATATCTGACCGTCCAGTCAACCGCAAAACCCCTTGTTCTCCGTTGCACTTTACAGCTTTCGATTTTGTCGTCTTTGTTCATCGGCTTCTATCGTCTTCGTCCGCATCCGATGAGATTCATACGTTGCCGACACTCAGACTCGCTGACCCACAGAACTCAGATTCGTCGTATAGTTTTTGTTGTTGTACGCTCATATTTGTCTTTGTTCATTTAA

Protein sequence

MHLLLCTSSASNSHKISVFHCPNLTVQPTMKPLVLRCTLQLCVFHCAYLTVQSTAKPLVLRCTLQLSILSSLFIGFYRLRPHPMRFIRCRHSDSLTHRTQIRRIVFVVVRSYLSLFI*
Homology
[Close]
BLAST of CsaV3_7G018760.1 vs. NCBI nr
Match: KAE8645999.1 (hypothetical protein Csa_015459 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 7.6e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MHLLLCTSSASNSHKISVFHCPNLTVQPTMKPLVLRCTLQLCVFHCAYLTVQSTAKPLVL 60
           MHLLLCTSSASNSHKISVFHCPNLTVQPTMKPLVLRCTLQLCVFHCAYLTVQSTAKPLVL
Sbjct: 1   MHLLLCTSSASNSHKISVFHCPNLTVQPTMKPLVLRCTLQLCVFHCAYLTVQSTAKPLVL 60

Query: 61  RCTLQLSILSSLFIGFYRLRPHPMRFIRCRHSDSLTHRTQIRRIVFVVVRSYLSLFI 118
           RCTLQLSILSSLFIGFYRLRPHPMRFIRCRHSDSLTHRTQIRRIVFVVVRSYLSLFI
Sbjct: 61  RCTLQLSILSSLFIGFYRLRPHPMRFIRCRHSDSLTHRTQIRRIVFVVVRSYLSLFI 117

[Close]
BLAST of CsaV3_7G018760.1 vs. ExPASy TrEMBL
Match: A0A0A0LDX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G760540 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.0e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 30  MKPLVLRCTLQLCVFHCAYLTVQSTAKPLVLRCTLQLSILSSLFIGFYRLRPHPMRFIRC 89
           MKPLVLRCTLQLCVFHCAYLTVQSTAKPLVLRCTLQLSILSSLFIGFYRLRPHPMRFIRC
Sbjct: 1   MKPLVLRCTLQLCVFHCAYLTVQSTAKPLVLRCTLQLSILSSLFIGFYRLRPHPMRFIRC 60

Query: 90  RHSDSLTHRTQIRRIVFVVVRSYLSLFI 118
           RHSDSLTHRTQIRRIVFVVVRSYLSLFI
Sbjct: 61  RHSDSLTHRTQIRRIVFVVVRSYLSLFI 88

The following BLAST results are available for this feature:
BLAST of CsaV3_7G018760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645999.17.6e-58100.00hypothetical protein Csa_015459 [Cucumis sativus][more]
BLAST of CsaV3_7G018760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G018760.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDX72.0e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G760540 PE=4 SV=1[more]
BLAST of CsaV3_7G018760.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G018760CsaV3_7G018760gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G018760.1.exon1CsaV3_7G018760.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G018760.1.cds1CsaV3_7G018760.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G018760.1CsaV3_7G018760.1-proteinpolypeptide