CsaV3_7G018290.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G018290.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	mitochondrial import inner membrane translocase subunit TIM50
Location	chr7: 8150792 .. 8151059 (+)
Sequence length	268
RNA-Seq Expression	CsaV3_7G018290.1
Synteny	CsaV3_7G018290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCCTCTCATTTTCCGATCCCGATTCTTTTCCCTTCTGAAGAATCGCCATGGCCGTCTTATGAGCTCCGACCTCGCTTCAACCCCTTCCAAAGATGCCCTCAATGCCTCTCAGAAGCTCGTCTCCGATCAGATTCCACCTGATGCTCAAACCACTTCTGCTACTTCTTCTTCTTCTTCCTCTAGTAAGCCCTGGAATTTCTTCAAGTATAGTTTGATTGGTGCTCTCACAGGTGCAACTGCGGTTGCTGGTTACGCCAGTTATG

mRNA sequence

ATGTCCCCTCTCATTTTCCGATCCCGATTCTTTTCCCTTCTGAAGAATCGCCATGGCCGTCTTATGAGCTCCGACCTCGCTTCAACCCCTTCCAAAGATGCCCTCAATGCCTCTCAGAAGCTCGTCTCCGATCAGATTCCACCTGATGCTCAAACCACTTCTGCTACTTCTTCTTCTTCTTCCTCTAGTAAGCCCTGGAATTTCTTCAAGTATAGTTTGATTGGTGCTCTCACAGGTGCAACTGCGGTTGCTGGTTACGCCAGTTATG

Coding sequence (CDS)

ATGTCCCCTCTCATTTTCCGATCCCGATTCTTTTCCCTTCTGAAGAATCGCCATGGCCGTCTTATGAGCTCCGACCTCGCTTCAACCCCTTCCAAAGATGCCCTCAATGCCTCTCAGAAGCTCGTCTCCGATCAGATTCCACCTGATGCTCAAACCACTTCTGCTACTTCTTCTTCTTCTTCCTCTAGTAAGCCCTGGAATTTCTTCAAGTATAGTTTGATTGGTGCTCTCACAGGTGCAACTGCGGTTGCTGGTTACGCCAGTTATG

Protein sequence

MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSSSSSKPWNFFKYSLIGALTGATAVAGYASYX

Homology

[Close]

BLAST of CsaV3_7G018290.1 vs. NCBI nr
Match: XP_031744461.1 (mitochondrial import inner membrane translocase subunit TIM50-like isoform X1 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.7e-38
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60
          MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS
Sbjct: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60

Query: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 90
          SSSKPWNFFKYSLIGALTGATAVAGYASY
Sbjct: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 89

[Close]

BLAST of CsaV3_7G018290.1 vs. NCBI nr
Match: XP_031744462.1 (mitochondrial import inner membrane translocase subunit TIM50-like isoform X2 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.7e-38
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60
          MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS
Sbjct: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60

Query: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 90
          SSSKPWNFFKYSLIGALTGATAVAGYASY
Sbjct: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 89

[Close]

BLAST of CsaV3_7G018290.1 vs. NCBI nr
Match: KAE8645966.1 (hypothetical protein Csa_015465, partial [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.7e-38
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60
          MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS
Sbjct: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60

Query: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 90
          SSSKPWNFFKYSLIGALTGATAVAGYASY
Sbjct: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 89

[Close]

BLAST of CsaV3_7G018290.1 vs. NCBI nr
Match: XP_031745212.1 (mitochondrial import inner membrane translocase subunit TIM50 [Cucumis sativus] >KAE8645967.1 hypothetical protein Csa_015462 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 3.3e-37
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60
          MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSA SSSS
Sbjct: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSAISSSS 60

Query: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 90
          SSSKPWNFFKYSLIGALTGATAVAGYASY
Sbjct: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 89

[Close]

BLAST of CsaV3_7G018290.1 vs. NCBI nr
Match: XP_008462988.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 7.4e-37
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60
          MSPL+FRSRF SLLKNRHGRLMSSDLASTPSKDA+NASQKLVSDQIPPDAQTTSATSSSS
Sbjct: 1  MSPLVFRSRFISLLKNRHGRLMSSDLASTPSKDAINASQKLVSDQIPPDAQTTSATSSSS 60

Query: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 90
          SSSKPWNFFKYSLIGALTGATAVAGYASY
Sbjct: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 89

[Close]

BLAST of CsaV3_7G018290.1 vs. ExPASy TrEMBL
Match: A0A5D3C7P7 (Mitochondrial import inner membrane translocase subunit TIM50 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00490 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60
          MSPL+FRSRF SLLKNRHGRLMSSDLASTPSKDA+NASQKLVSDQIPPDAQTTSATSSSS
Sbjct: 1  MSPLVFRSRFISLLKNRHGRLMSSDLASTPSKDAINASQKLVSDQIPPDAQTTSATSSSS 60

Query: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 90
          SSSKPWNFFKYSLIGALTGATAVAGYASY
Sbjct: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 89

[Close]

BLAST of CsaV3_7G018290.1 vs. ExPASy TrEMBL
Match: A0A1S3CIN1 (mitochondrial import inner membrane translocase subunit TIM50 OS=Cucumis melo OX=3656 GN=LOC103501237 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTTSATSSSS 60
          MSPL+FRSRF SLLKNRHGRLMSSDLASTPSKDA+NASQKLVSDQIPPDAQTTSATSSSS
Sbjct: 1  MSPLVFRSRFISLLKNRHGRLMSSDLASTPSKDAINASQKLVSDQIPPDAQTTSATSSSS 60

Query: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 90
          SSSKPWNFFKYSLIGALTGATAVAGYASY
Sbjct: 61 SSSKPWNFFKYSLIGALTGATAVAGYASY 89

[Close]

BLAST of CsaV3_7G018290.1 vs. ExPASy TrEMBL
Match: A0A6J1IJ22 (mitochondrial import inner membrane translocase subunit TIM50 OS=Cucurbita maxima OX=3661 GN=LOC111476733 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-31
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQ--TTSATSS 60
          MSPLIFRSRF SLLKNRHGRLMSSDLASTPSKDA+NASQKL+SDQIPPD Q  T S++SS
Sbjct: 1  MSPLIFRSRFVSLLKNRHGRLMSSDLASTPSKDAINASQKLISDQIPPDVQGPTGSSSSS 60

Query: 61 SSSSSKPWNFFKYSLIGALTGATAVAGYASY 90
          S+++SKPWNF KYSLIGALTGATAVAGYASY
Sbjct: 61 STTTSKPWNFLKYSLIGALTGATAVAGYASY 91

[Close]

BLAST of CsaV3_7G018290.1 vs. ExPASy TrEMBL
Match: A0A6J1FGI0 (mitochondrial import inner membrane translocase subunit TIM50 OS=Cucurbita moschata OX=3662 GN=LOC111443698 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQ-TTSATSSS 60
          MSPLI R RF SLLKNRHGRLMSSDLASTPSKDA+NASQKL+SDQIPPD Q  T ++SSS
Sbjct: 1  MSPLILRPRFVSLLKNRHGRLMSSDLASTPSKDAINASQKLISDQIPPDVQGPTGSSSSS 60

Query: 61 SSSSKPWNFFKYSLIGALTGATAVAGYASY 90
          S++SKPWNF KYSLIGALTGATAVAGYASY
Sbjct: 61 STTSKPWNFLKYSLIGALTGATAVAGYASY 90

[Close]

BLAST of CsaV3_7G018290.1 vs. ExPASy TrEMBL
Match: A0A6J1FKX9 (mitochondrial import inner membrane translocase subunit TIM50-like OS=Cucurbita moschata OX=3662 GN=LOC111446192 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.2e-28
Identity = 76/92 (82.61%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSPLIFRSRFFSLLKNRHGRLMSSDLASTPSKDALNASQKLVSDQIPPDAQTT---SATS 60
          MSP IFRSRF SLLKNRHGRLMSSDLASTPSKD++ ASQKLVSDQIPPDAQ T   S++S
Sbjct: 1  MSPPIFRSRFISLLKNRHGRLMSSDLASTPSKDSIIASQKLVSDQIPPDAQATSSSSSSS 60

Query: 61 SSSSSSKPWNFFKYSLIGALTGATAVAGYASY 90
          SSSSSSKP NF KYSLI ALT  TAVAGYASY
Sbjct: 61 SSSSSSKPLNFLKYSLISALTATTAVAGYASY 92

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744461.1	6.7e-38	100.00	mitochondrial import inner membrane translocase subunit TIM50-like isoform X1 [C...	[more]
XP_031744462.1	6.7e-38	100.00	mitochondrial import inner membrane translocase subunit TIM50-like isoform X2 [C...	[more]
KAE8645966.1	6.7e-38	100.00	hypothetical protein Csa_015465, partial [Cucumis sativus]	[more]
XP_031745212.1	3.3e-37	98.88	mitochondrial import inner membrane translocase subunit TIM50 [Cucumis sativus] ...	[more]
XP_008462988.1	7.4e-37	96.63	PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 [Cucumi...	[more]

BLAST of CsaV3_7G018290.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7P7	3.6e-37	96.63	Mitochondrial import inner membrane translocase subunit TIM50 OS=Cucumis melo va...	[more]
A0A1S3CIN1	3.6e-37	96.63	mitochondrial import inner membrane translocase subunit TIM50 OS=Cucumis melo OX...	[more]
A0A6J1IJ22	1.0e-31	85.71	mitochondrial import inner membrane translocase subunit TIM50 OS=Cucurbita maxim...	[more]
A0A6J1FGI0	1.5e-30	84.44	mitochondrial import inner membrane translocase subunit TIM50 OS=Cucurbita mosch...	[more]
A0A6J1FKX9	5.2e-28	82.61	mitochondrial import inner membrane translocase subunit TIM50-like OS=Cucurbita ...	[more]

BLAST of CsaV3_7G018290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..66
None	No IPR available	PANTHER	PTHR12210:SF153	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM50-LIKE	coord: 5..89
None	No IPR available	PANTHER	PTHR12210	NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED	coord: 5..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G018290	CsaV3_7G018290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G018290.1.exon1	CsaV3_7G018290.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G018290.1.cds1	CsaV3_7G018290.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G018290.1	CsaV3_7G018290.1-protein	polypeptide