CsaV3_7G011540.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G011540.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionStress response protein NST1-like
Locationchr7: 6365493 .. 6365783 (-)
Sequence length273
RNA-Seq ExpressionCsaV3_7G011540.1
SyntenyCsaV3_7G011540.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGCACCCTTTAACTAGACAAGCCCATTAAGATCGAAAAGGGATTACTACCCTTTAAGGACCCACTACTTGACTTCCTCTACGACCCAATCAAGGCATTCAAATGGAAAAAGTTCTTTGTCAGTGAGACACAAATTCGATTAGATCTGGTGGATATGTTCTATGCAGCAAAGTTTCACCCTCAAGAATCATACGTCGTAGTGAAAGGAGAGAAAGTTCCCTTCATCGTGGAATCGATTAACGAGTTATATGATTTTCCCAATGATCCTAACGCATATCTCGGCTAA

mRNA sequence

CTAGACAAGCCCATTAAGATCGAAAAGGGATTACTACCCTTTAAGGACCCACTACTTGACTTCCTCTACGACCCAATCAAGGCATTCAAATGGAAAAAGTTCTTTGTCAGTGAGACACAAATTCGATTAGATCTGGTGGATATGTTCTATGCAGCAAAGTTTCACCCTCAAGAATCATACGTCGTAGTGAAAGGAGAGAAAGTTCCCTTCATCGTGGAATCGATTAACGAGTTATATGATTTTCCCAATGATCCTAACGCATATCTCGGCTAA

Coding sequence (CDS)

CTAGACAAGCCCATTAAGATCGAAAAGGGATTACTACCCTTTAAGGACCCACTACTTGACTTCCTCTACGACCCAATCAAGGCATTCAAATGGAAAAAGTTCTTTGTCAGTGAGACACAAATTCGATTAGATCTGGTGGATATGTTCTATGCAGCAAAGTTTCACCCTCAAGAATCATACGTCGTAGTGAAAGGAGAGAAAGTTCCCTTCATCGTGGAATCGATTAACGAGTTATATGATTTTCCCAATGATCCTAACGCATATCTCGGCTAA

Protein sequence

LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESYVVVKGEKVPFIVESINELYDFPNDPNAYLG*
Homology
BLAST of CsaV3_7G011540.1 vs. NCBI nr
Match: KAE8645907.1 (hypothetical protein Csa_023734, partial [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 7.5e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 1  LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
          LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY
Sbjct: 1  LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60

Query: 61 VVVKGEKVPFIVESINELYDFPNDPNAYLG 91
          VVVKGEKVPFIVESINELYDFPNDPNAYLG
Sbjct: 61 VVVKGEKVPFIVESINELYDFPNDPNAYLG 90

BLAST of CsaV3_7G011540.1 vs. NCBI nr
Match: TYK25768.1 (stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1   LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
           LDK IKIEKGLLPF DPLL+FLY  IK  K +KFF+ ET+++LD+VDMFY AKFH  ESY
Sbjct: 226 LDKLIKIEKGLLPFNDPLLNFLYGLIKTMKLEKFFIEETKVKLDIVDMFYVAKFHLNESY 285

Query: 61  VVVKGEKVPFIVESINELYDFPND 85
           ++V+GEKV F VE INELYD PND
Sbjct: 286 MIVEGEKVSFTVEEINELYDLPND 309

BLAST of CsaV3_7G011540.1 vs. NCBI nr
Match: KAA0038829.1 (stress response protein NST1-like [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1   LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
           LDK IKIEKGLLPF DPLL+FLY  IK  K +KFF+ ET+++LD+VDMFY AKFH  ESY
Sbjct: 257 LDKLIKIEKGLLPFNDPLLNFLYGLIKTMKLEKFFIEETKVKLDIVDMFYVAKFHLNESY 316

Query: 61  VVVKGEKVPFIVESINELYDFPND 85
           ++V+GEKV F VE INELYD PND
Sbjct: 317 MIVEGEKVSFTVEEINELYDLPND 340

BLAST of CsaV3_7G011540.1 vs. NCBI nr
Match: KAA0056424.1 (hypothetical protein E6C27_scaffold186G001800 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-21
Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 5  IKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESYVVVK 64
          +KIEKGL PFKD L  FL+ PIKAF+W+K F  +T++RL +VDMFY  KFHP + Y +V 
Sbjct: 1  MKIEKGLFPFKDALPYFLHRPIKAFEWRKLFEGDTKVRLYVVDMFYRTKFHPTDLYAMVD 60

Query: 65 GEKVPFIVESINELYDFPNDPNAYLG 91
          GE++ F  E INELY FPN+   Y+G
Sbjct: 61 GERISFRAEVINELYGFPNEAELYIG 86

BLAST of CsaV3_7G011540.1 vs. NCBI nr
Match: KGN64973.1 (hypothetical protein Csa_022771 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 4.6e-18
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 0

Query: 1  LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
          LD+ IKIEKGLL F   L DFLY PIKA KW+KFF  ET+++ D+VD+FYA KFHP+ESY
Sbjct: 6  LDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESY 65

Query: 61 VVVKGEKVPFIVE 74
           +V  E+VPF  E
Sbjct: 66 AIVDDERVPFTKE 78

BLAST of CsaV3_7G011540.1 vs. ExPASy TrEMBL
Match: A0A5A7TBU7 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold279G00120 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-26
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1   LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
           LDK IKIEKGLLPF DPLL+FLY  IK  K +KFF+ ET+++LD+VDMFY AKFH  ESY
Sbjct: 257 LDKLIKIEKGLLPFNDPLLNFLYGLIKTMKLEKFFIEETKVKLDIVDMFYVAKFHLNESY 316

Query: 61  VVVKGEKVPFIVESINELYDFPND 85
           ++V+GEKV F VE INELYD PND
Sbjct: 317 MIVEGEKVSFTVEEINELYDLPND 340

BLAST of CsaV3_7G011540.1 vs. ExPASy TrEMBL
Match: A0A5D3DQE7 (Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00740 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-26
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1   LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
           LDK IKIEKGLLPF DPLL+FLY  IK  K +KFF+ ET+++LD+VDMFY AKFH  ESY
Sbjct: 226 LDKLIKIEKGLLPFNDPLLNFLYGLIKTMKLEKFFIEETKVKLDIVDMFYVAKFHLNESY 285

Query: 61  VVVKGEKVPFIVESINELYDFPND 85
           ++V+GEKV F VE INELYD PND
Sbjct: 286 MIVEGEKVSFTVEEINELYDLPND 309

BLAST of CsaV3_7G011540.1 vs. ExPASy TrEMBL
Match: A0A5A7UMK2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001800 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.6e-21
Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 5  IKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESYVVVK 64
          +KIEKGL PFKD L  FL+ PIKAF+W+K F  +T++RL +VDMFY  KFHP + Y +V 
Sbjct: 1  MKIEKGLFPFKDALPYFLHRPIKAFEWRKLFEGDTKVRLYVVDMFYRTKFHPTDLYAMVD 60

Query: 65 GEKVPFIVESINELYDFPNDPNAYLG 91
          GE++ F  E INELY FPN+   Y+G
Sbjct: 61 GERISFRAEVINELYGFPNEAELYIG 86

BLAST of CsaV3_7G011540.1 vs. ExPASy TrEMBL
Match: A0A0A0LT82 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 0

Query: 1  LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
          LD+ IKIEKGLL F   L DFLY PIKA KW+KFF  ET+++ D+VD+FYA KFHP+ESY
Sbjct: 6  LDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESY 65

Query: 61 VVVKGEKVPFIVE 74
           +V  E+VPF  E
Sbjct: 66 AIVDDERVPFTKE 78

BLAST of CsaV3_7G011540.1 vs. ExPASy TrEMBL
Match: A0A5A7VMD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00650 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 1   LDKPIKIEKGLLPFKDPLLDFLYDPIKAFKWKKFFVSETQIRLDLVDMFYAAKFHPQESY 60
           LDK +KIEKGL  F   LLDFLY+PIKAFKW+KFF  + ++RLD+V+MFY  K++  ESY
Sbjct: 47  LDKLLKIEKGLFLFSGHLLDFLYEPIKAFKWEKFFRGDAKVRLDVVNMFYTVKYYQVESY 106

Query: 61  VVVKGEKVPFIV 73
             V+G+K+PFIV
Sbjct: 107 ATVEGKKIPFIV 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8645907.17.5e-45100.00hypothetical protein Csa_023734, partial [Cucumis sativus][more]
TYK25768.11.0e-2570.24stress response protein NST1-like [Cucumis melo var. makuwa][more]
KAA0038829.11.0e-2570.24stress response protein NST1-like [Cucumis melo var. makuwa][more]
KAA0056424.17.5e-2156.98hypothetical protein E6C27_scaffold186G001800 [Cucumis melo var. makuwa][more]
KGN64973.14.6e-1863.01hypothetical protein Csa_022771 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TBU74.9e-2670.24Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DQE74.9e-2670.24Stress response protein NST1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UMK23.6e-2156.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LT822.2e-1863.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1[more]
A0A5A7VMD32.4e-1761.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G011540CsaV3_7G011540gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G011540.1.exon1CsaV3_7G011540.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G011540.1.cds1CsaV3_7G011540.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G011540.1CsaV3_7G011540.1-proteinpolypeptide