CsaV3_7G011370.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G011370.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 6102759 .. 6103986 (-)
Sequence length291
RNA-Seq ExpressionCsaV3_7G011370.1
SyntenyCsaV3_7G011370.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTTCTAAAAATGTTGGAAAGCTTCAAATCCAAGCATGATTATTCAACATGGTTTTCAGCACAGAGCAAGCGGAAAAGCAGTCACCCTGAAGTTTTTGGCCGTCTGTAAGATGAGAAGAGGATTATTTATGCGGACAAATTTAAGCAGAATAAGGTCTCCCCTGTTATGAACATGGAAAAACAGAGCAATCACCATCAATGGGTTATTAAGAATCCAAAGGTCTTCCGAACAGATTTCAACAATCTTTGGGTTGTCACACGTTTTTTTGAGTTCAATAGCTGGTTCGAGATTAATGAAAGTTTATAAACTGCCTTCCAATGGGATGTCACCATCAATCTATTGTTTGCAGAGAAAGCTCTAATTGATATTGATCAACGATTTTTGGATGAAGTGATAGAGCAACCTAGGAAATGGCAGAATATTTGGTGCCTTCCACTTAAGATTTGGAAAATGGCACAAGTTAATTCATAGCAGACCTTTGTACTCAAGAAGATATGGTGGATTGATCTCAATTAAAAACTTACCTCTAGACTACTGGAATATTCAAACTTTTGAAACTTTTGGGGTCTACTTTTGGGGCTTATTAGACATATCCCTGGAAATTTTGAATTTTGTTAATGTATCAGAAGCTAAAATTCAAGTTAAAGAGAAAAGAGGAAATATTTTTCTGAACTTCGGTGATATTTCTGTAGTCAATCCACCCAGTAAAATCAAAGGTGATGTATTTTCTTATGATTTTTGAAATCTGGTGGATGTTGTTAGATTAAATCAAGTTCTGAAGGATGAAGGGGTTGAATGTGATTCATTAAATGGTCAGTTTGAGTTTCTCCTGCAAGAGAGGATTTGTGCACAGTAAACCAGAAATCCATTTATCCAGTAAAATAAATTCAACTAGTTGAAACTTCACAAGCCTAAATTTTCTCAACTGAAGCCAAAGAAGGTAAACTCAAAGGTTATTGTGAATTCTCTGCTGGAATTCGAAAAGATCAGTTAAAGAAGAGAGAGAAAGCTGTATTGGACTCCTCGGTTTTTTTAATTGGGGAAAGCCAATCAATGTCTTGCAATCCTAAAGAAGGGTTGGATTCTTTGGTGCAGCCGCCTGACACTACTAAGGAAATCAATCAGCCATTGGGGTAGTTGAGCATTGATTCCTCCCCTCCAAAAGGCATAATCAATGCCCATACAGCTGTAAAGCCCACTAAGACAATAGTTTAACCTACAACCCT

mRNA sequence

ATGAACATGGAAAAACAGAGCAATCACCATCAATGGGTTATTAAGAATCCAAAGGTCTTCCGAACAGATTTCAACAATCTTTGGGTTGTCACACGTAAACTCAAAGGTTATTGTGAATTCTCTGCTGGAATTCGAAAAGATCAGTTAAAGAAGAGAGAGAAAGCTGTATTGGACTCCTCGGTTTTTTTAATTGGGGAAAGCCAATCAATGTCTTGCAATCCTAAAGAAGGGTTGGATTCTTTGGTGCAGCCGCCTGACACTACTAAGGAAATCAATCAGCCATTGGGGTAG

Coding sequence (CDS)

ATGAACATGGAAAAACAGAGCAATCACCATCAATGGGTTATTAAGAATCCAAAGGTCTTCCGAACAGATTTCAACAATCTTTGGGTTGTCACACGTAAACTCAAAGGTTATTGTGAATTCTCTGCTGGAATTCGAAAAGATCAGTTAAAGAAGAGAGAGAAAGCTGTATTGGACTCCTCGGTTTTTTTAATTGGGGAAAGCCAATCAATGTCTTGCAATCCTAAAGAAGGGTTGGATTCTTTGGTGCAGCCGCCTGACACTACTAAGGAAATCAATCAGCCATTGGGGTAG

Protein sequence

MNMEKQSNHHQWVIKNPKVFRTDFNNLWVVTRKLKGYCEFSAGIRKDQLKKREKAVLDSSVFLIGESQSMSCNPKEGLDSLVQPPDTTKEINQPLG*
Homology
[Close]
BLAST of CsaV3_7G011370.1 vs. NCBI nr
Match: KAE8645901.1 (hypothetical protein Csa_011874 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 4.5e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MNMEKQSNHHQWVIKNPKVFRTDFNNLWVVTRKLKGYCEFSAGIRKDQLKKREKAVLDSS 60
          MNMEKQSNHHQWVIKNPKVFRTDFNNLWVVTRKLKGYCEFSAGIRKDQLKKREKAVLDSS
Sbjct: 1  MNMEKQSNHHQWVIKNPKVFRTDFNNLWVVTRKLKGYCEFSAGIRKDQLKKREKAVLDSS 60

Query: 61 VFLIGESQSMSCNPKEGLDSLVQPPDTTKEINQPLG 97
          VFLIGESQSMSCNPKEGLDSLVQPPDTTKEINQPLG
Sbjct: 61 VFLIGESQSMSCNPKEGLDSLVQPPDTTKEINQPLG 96

The following BLAST results are available for this feature:
BLAST of CsaV3_7G011370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645901.14.5e-48100.00hypothetical protein Csa_011874 [Cucumis sativus][more]
BLAST of CsaV3_7G011370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..96

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G011370CsaV3_7G011370gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G011370.1.exon2CsaV3_7G011370.1.exon2exon
CsaV3_7G011370.1.exon1CsaV3_7G011370.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G011370.1.cds2CsaV3_7G011370.1.cds2CDS
CsaV3_7G011370.1.cds1CsaV3_7G011370.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G011370.1CsaV3_7G011370.1-proteinpolypeptide