CsaV3_7G011370 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G011370
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 6102759 .. 6103986 (-)
RNA-Seq Expression	CsaV3_7G011370
Synteny	CsaV3_7G011370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTTCTAAAAATGTTGGAAAGCTTCAAATCCAAGCATGATTATTCAACATGGTTTTCAGCACAGAGCAAGCGGAAAAGCAGTCACCCTGAAGTTTTTGGCCGTCTGTAAGATGAGAAGAGGATTATTTATGCGGACAAATTTAAGCAGAATAAGGTCTCCCCTGTTATGAACATGGAAAAACAGAGCAATCACCATCAATGGGTTATTAAGAATCCAAAGGTCTTCCGAACAGATTTCAACAATCTTTGGGTTGTCACACGTTTTTTTGAGTTCAATAGCTGGTTCGAGATTAATGAAAGTTTATAAACTGCCTTCCAATGGGATGTCACCATCAATCTATTGTTTGCAGAGAAAGCTCTAATTGATATTGATCAACGATTTTTGGATGAAGTGATAGAGCAACCTAGGAAATGGCAGAATATTTGGTGCCTTCCACTTAAGATTTGGAAAATGGCACAAGTTAATTCATAGCAGACCTTTGTACTCAAGAAGATATGGTGGATTGATCTCAATTAAAAACTTACCTCTAGACTACTGGAATATTCAAACTTTTGAAACTTTTGGGGTCTACTTTTGGGGCTTATTAGACATATCCCTGGAAATTTTGAATTTTGTTAATGTATCAGAAGCTAAAATTCAAGTTAAAGAGAAAAGAGGAAATATTTTTCTGAACTTCGGTGATATTTCTGTAGTCAATCCACCCAGTAAAATCAAAGGTGATGTATTTTCTTATGATTTTTGAAATCTGGTGGATGTTGTTAGATTAAATCAAGTTCTGAAGGATGAAGGGGTTGAATGTGATTCATTAAATGGTCAGTTTGAGTTTCTCCTGCAAGAGAGGATTTGTGCACAGTAAACCAGAAATCCATTTATCCAGTAAAATAAATTCAACTAGTTGAAACTTCACAAGCCTAAATTTTCTCAACTGAAGCCAAAGAAGGTAAACTCAAAGGTTATTGTGAATTCTCTGCTGGAATTCGAAAAGATCAGTTAAAGAAGAGAGAGAAAGCTGTATTGGACTCCTCGGTTTTTTTAATTGGGGAAAGCCAATCAATGTCTTGCAATCCTAAAGAAGGGTTGGATTCTTTGGTGCAGCCGCCTGACACTACTAAGGAAATCAATCAGCCATTGGGGTAGTTGAGCATTGATTCCTCCCCTCCAAAAGGCATAATCAATGCCCATACAGCTGTAAAGCCCACTAAGACAATAGTTTAACCTACAACCCT

mRNA sequence

ATGAACATGGAAAAACAGAGCAATCACCATCAATGGGTTATTAAGAATCCAAAGGTCTTCCGAACAGATTTCAACAATCTTTGGGTTGTCACACGTAAACTCAAAGGTTATTGTGAATTCTCTGCTGGAATTCGAAAAGATCAGTTAAAGAAGAGAGAGAAAGCTGTATTGGACTCCTCGGTTTTTTTAATTGGGGAAAGCCAATCAATGTCTTGCAATCCTAAAGAAGGGTTGGATTCTTTGGTGCAGCCGCCTGACACTACTAAGGAAATCAATCAGCCATTGGGGTAG

Coding sequence (CDS)

ATGAACATGGAAAAACAGAGCAATCACCATCAATGGGTTATTAAGAATCCAAAGGTCTTCCGAACAGATTTCAACAATCTTTGGGTTGTCACACGTAAACTCAAAGGTTATTGTGAATTCTCTGCTGGAATTCGAAAAGATCAGTTAAAGAAGAGAGAGAAAGCTGTATTGGACTCCTCGGTTTTTTTAATTGGGGAAAGCCAATCAATGTCTTGCAATCCTAAAGAAGGGTTGGATTCTTTGGTGCAGCCGCCTGACACTACTAAGGAAATCAATCAGCCATTGGGGTAG

Protein sequence

MNMEKQSNHHQWVIKNPKVFRTDFNNLWVVTRKLKGYCEFSAGIRKDQLKKREKAVLDSSVFLIGESQSMSCNPKEGLDSLVQPPDTTKEINQPLG*

Homology

[Close]

BLAST of CsaV3_7G011370 vs. NCBI nr
Match: KAE8645901.1 (hypothetical protein Csa_011874 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 4.5e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MNMEKQSNHHQWVIKNPKVFRTDFNNLWVVTRKLKGYCEFSAGIRKDQLKKREKAVLDSS 60
          MNMEKQSNHHQWVIKNPKVFRTDFNNLWVVTRKLKGYCEFSAGIRKDQLKKREKAVLDSS
Sbjct: 1  MNMEKQSNHHQWVIKNPKVFRTDFNNLWVVTRKLKGYCEFSAGIRKDQLKKREKAVLDSS 60

Query: 61 VFLIGESQSMSCNPKEGLDSLVQPPDTTKEINQPLG 97
          VFLIGESQSMSCNPKEGLDSLVQPPDTTKEINQPLG
Sbjct: 61 VFLIGESQSMSCNPKEGLDSLVQPPDTTKEINQPLG 96

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645901.1	4.5e-48	100.00	hypothetical protein Csa_011874 [Cucumis sativus]	[more]

BLAST of CsaV3_7G011370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011370 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011370.1	CsaV3_7G011370.1	mRNA