CsaV3_7G003830.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G003830.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 2842435 .. 2842647 (+)
Sequence length213
RNA-Seq ExpressionCsaV3_7G003830.1
SyntenyCsaV3_7G003830.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCAGGTGGAGGTGGGGAAATCGGAATAGTGTCAGGCGGAGGTGGAGAAGTTGGAATAACGTCAGGTGGAGGTGGGGAAGCCGGAGTAGCGTCAGGTGGAGGTGGGGAAGCTGAAGTAGCGTCAGACGGAGGCGGAAAAGCAGGAATCGAATTTTGGGGTGGTGGGTTTGGATTAGAATACGATGGGTTGGGTGGGTTCTGTGGCTGA

mRNA sequence

ATGGTATCAGGTGGAGGTGGGGAAATCGGAATAGTGTCAGGCGGAGGTGGAGAAGTTGGAATAACGTCAGGTGGAGGTGGGGAAGCCGGAGTAGCGTCAGGTGGAGGTGGGGAAGCTGAAGTAGCGTCAGACGGAGGCGGAAAAGCAGGAATCGAATTTTGGGGTGGTGGGTTTGGATTAGAATACGATGGGTTGGGTGGGTTCTGTGGCTGA

Coding sequence (CDS)

ATGGTATCAGGTGGAGGTGGGGAAATCGGAATAGTGTCAGGCGGAGGTGGAGAAGTTGGAATAACGTCAGGTGGAGGTGGGGAAGCCGGAGTAGCGTCAGGTGGAGGTGGGGAAGCTGAAGTAGCGTCAGACGGAGGCGGAAAAGCAGGAATCGAATTTTGGGGTGGTGGGTTTGGATTAGAATACGATGGGTTGGGTGGGTTCTGTGGCTGA

Protein sequence

MVSGGGGEIGIVSGGGGEVGITSGGGGEAGVASGGGGEAEVASDGGGKAGIEFWGGGFGLEYDGLGGFCG*
Homology
[Close]
BLAST of CsaV3_7G003830.1 vs. NCBI nr
Match: KAE8645748.1 (hypothetical protein Csa_020199 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 9.7e-24
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MVSGGGGEIGIVSGGGGEVGITSGGGGEAGVASGGGGEAEVASDGGGKAGIEFWGGGFGL 60
          MVSGGGGEIGIVSGGGGEVGITSGGGGEAGVASGGGGEAEVASDGGGKAGIEFWGGGFGL
Sbjct: 1  MVSGGGGEIGIVSGGGGEVGITSGGGGEAGVASGGGGEAEVASDGGGKAGIEFWGGGFGL 60

Query: 61 EYDGLGGFCG 71
          EYDGLGGFCG
Sbjct: 61 EYDGLGGFCG 70

The following BLAST results are available for this feature:
BLAST of CsaV3_7G003830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645748.19.7e-24100.00hypothetical protein Csa_020199 [Cucumis sativus][more]
BLAST of CsaV3_7G003830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G003830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G003830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..44

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G003830CsaV3_7G003830gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G003830.1.exon1CsaV3_7G003830.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G003830.1.cds1CsaV3_7G003830.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G003830.1CsaV3_7G003830.1-proteinpolypeptide