CsaV3_6G050400.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G050400.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Glycogen phosphorylase 1-like
Location	chr6: 29381438 .. 29381830 (-)
Sequence length	393
RNA-Seq Expression	CsaV3_6G050400.1
Synteny	CsaV3_6G050400.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAACAATGGAAGAAGCACCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTGCTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAATTCTTCATCGCCACCAAAATCCCCTGTTACCTCAATTGGGACTACCCTCCTCTCCTCTGCCCTAAATCTTCGATTTTCCCCTTTCTCTCACTTCACCTCCAATGGGGTTTCTCCCTCTTCCTCAAAAAACTCTCCCGATTCGGCCTCCCCAAAACCTCCTGGCGATCCAAATGCCCTTATCAACTTCCACCGCCTTTGATTCTCGCTAAGGGCGTCCACCCTGCTCAGTGGGATGATGAACAGAGGATAAACTACGCCAGAATGAGGCTTAGAAGAAAACGTCTCGGCAGCGAT

mRNA sequence

ATGAAGGAAACAATGGAAGAAGCACCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTGCTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAATTCTTCATCGCCACCAAAATCCCCTGTTACCTCAATTGGGACTACCCTCCTCTCCTCTGCCCTAAATCTTCGATTTTCCCCTTTCTCTCACTTCACCTCCAATGGGGTTTCTCCCTCTTCCTCAAAAAACTCTCCCGATTCGGCCTCCCCAAAACCTCCTGGCGATCCAAATGCCCTTATCAACTTCCACCGCCTTTGATTCTCGCTAAGGGCGTCCACCCTGCTCAGTGGGATGATGAACAGAGGATAAACTACGCCAGAATGAGGCTTAGAAGAAAACGTCTCGGCAGCGAT

Coding sequence (CDS)

ATGAAGGAAACAATGGAAGAAGCACCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTGCTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAATTCTTCATCGCCACCAAAATCCCCTGTTACCTCAATTGGGACTACCCTCCTCTCCTCTGCCCTAAATCTTCGATTTTCCCCTTTCTCTCACTTCACCTCCAATGGGGTTTCTCCCTCTTCCTCAAAAAACTCTCCCGATTCGGCCTCCCCAAAACCTCCTGGCGATCCAAATGCCCTTATCAACTTCCACCGCCTTTGATTCTCGCTAAGGGCGTCCACCCTGCTCAGTGGGATGATGAACAGAGGATAAACTACGCCAGAATGAGGCTTAGAAGAAAACGTCTCGGCAGCGAT

Protein sequence

MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLRRKRLGSD

Homology

[Close]

BLAST of CsaV3_6G050400.1 vs. NCBI nr
Match: XP_004134687.2 (uncharacterized protein LOC101221431 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 2.7e-72
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 60
           MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP
Sbjct: 8   MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 67

Query: 61  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 120
           FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR
Sbjct: 68  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 127

Query: 121 MRLRRKRLGSD 132
           MRLRRKRLGSD
Sbjct: 128 MRLRRKRLGSD 138

[Close]

BLAST of CsaV3_6G050400.1 vs. NCBI nr
Match: KAE8647699.1 (hypothetical protein Csa_004129, partial [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 2.7e-72
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 60
           MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP
Sbjct: 1   MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 60

Query: 61  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 120
           FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR
Sbjct: 61  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 120

Query: 121 MRLRRKRLGSD 132
           MRLRRKRLGSD
Sbjct: 121 MRLRRKRLGSD 131

[Close]

BLAST of CsaV3_6G050400.1 vs. NCBI nr
Match: XP_008439813.1 (PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo])

HSP 1 Score: 273.5 bits (698), Expect = 9.6e-70
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 60
           MK+TMEE PW QKLQALTHILLCP TAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP
Sbjct: 8   MKKTMEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 67

Query: 61  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 120
           FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR
Sbjct: 68  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 127

Query: 121 MRLRRKRLGSD 132
           MRLRRKRLGSD
Sbjct: 128 MRLRRKRLGSD 138

[Close]

BLAST of CsaV3_6G050400.1 vs. NCBI nr
Match: KAA0052667.1 (uncharacterized protein E6C27_scaffold120G002770 [Cucumis melo var. makuwa] >TYK13158.1 uncharacterized protein E5676_scaffold255G007700 [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 6.9e-68
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 5   MEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 64
           MEE PW QKLQALTHILLCP TAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 1   MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60

Query: 65  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 124
           HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR
Sbjct: 61  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 120

Query: 125 RKRLGSD 132
           RKRLGSD
Sbjct: 121 RKRLGSD 127

[Close]

BLAST of CsaV3_6G050400.1 vs. NCBI nr
Match: XP_038883097.1 (uncharacterized protein LOC120074151 [Benincasa hispida])

HSP 1 Score: 255.4 bits (651), Expect = 2.7e-64
Identity = 118/129 (91.47%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 3   ETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFL 62
           + MEE PWPQKLQALTHILLCPTTAPPLASQ+ IATKIPCYLNWDYPPLLCPKSSIFPFL
Sbjct: 9   QIMEETPWPQKLQALTHILLCPTTAPPLASQYLIATKIPCYLNWDYPPLLCPKSSIFPFL 68

Query: 63  SLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMR 122
           SLHLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGVH AQW DEQR NY RMR
Sbjct: 69  SLHLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVHSAQWGDEQRKNYVRMR 128

Query: 123 LRRKRLGSD 132
           LRRKRL SD
Sbjct: 129 LRRKRLVSD 137

[Close]

BLAST of CsaV3_6G050400.1 vs. ExPASy TrEMBL
Match: A0A0A0KK88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.3e-72
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 60
           MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP
Sbjct: 8   MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 67

Query: 61  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 120
           FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR
Sbjct: 68  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 127

Query: 121 MRLRRKRLGSD 132
           MRLRRKRLGSD
Sbjct: 128 MRLRRKRLGSD 138

[Close]

BLAST of CsaV3_6G050400.1 vs. ExPASy TrEMBL
Match: A0A1S3B097 (uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 4.7e-70
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 60
           MK+TMEE PW QKLQALTHILLCP TAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP
Sbjct: 8   MKKTMEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 67

Query: 61  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 120
           FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR
Sbjct: 68  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 127

Query: 121 MRLRRKRLGSD 132
           MRLRRKRLGSD
Sbjct: 128 MRLRRKRLGSD 138

[Close]

BLAST of CsaV3_6G050400.1 vs. ExPASy TrEMBL
Match: A0A5A7UDV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007700 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.3e-68
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 5   MEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 64
           MEE PW QKLQALTHILLCP TAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 1   MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60

Query: 65  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 124
           HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR
Sbjct: 61  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 120

Query: 125 RKRLGSD 132
           RKRLGSD
Sbjct: 121 RKRLGSD 127

[Close]

BLAST of CsaV3_6G050400.1 vs. ExPASy TrEMBL
Match: A0A6J1EGM1 (uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC111433914 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 112/127 (88.19%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 5   MEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 64
           MEE+PWPQKLQ LTHILLCPTTAPPLASQ+F+ATKIPCYLNWDYPPLLCPK SIFPF SL
Sbjct: 1   MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFPSL 60

Query: 65  HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 124
           HLQWGFSLFLK+LSRF LPKTSWRSKCP+Q PPPLILAKGV PAQW DEQR  Y RMRLR
Sbjct: 61  HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPAQWGDEQRRTYVRMRLR 120

Query: 125 RKRLGSD 132
           RKRLGSD
Sbjct: 121 RKRLGSD 127

[Close]

BLAST of CsaV3_6G050400.1 vs. ExPASy TrEMBL
Match: A0A6J1IR68 (uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 113/131 (86.26%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MKETMEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFP 60
           +K+ ME+APW QKL+ALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLC K SIFP
Sbjct: 5   VKKIMEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFP 64

Query: 61  FLSLHLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYAR 120
           F SLHLQWGFSLFLK+LSR GLP TSWRSKCPYQLPPPL+LA+GV  AQWDDEQR NY R
Sbjct: 65  FPSLHLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRRNYVR 124

Query: 121 MRLRRKRLGSD 132
           MRLRRKRLGSD
Sbjct: 125 MRLRRKRLGSD 135

[Close]

BLAST of CsaV3_6G050400.1 vs. TAIR 10
Match: AT2G33855.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-31
Identity = 68/125 (54.40%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 5   MEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 64
           MEE  W Q++QA+THIL  PTT P L SQFFI   IP Y++WDYPP+  P          
Sbjct: 1   MEETTWGQRIQAVTHILTNPTTKPSLYSQFFIGAIIPNYVSWDYPPVYSP---------T 60

Query: 65  HL-QWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRL 124
           HL QW  S F K++SRFGLP TSWRS  PY  PP  ++A GV   +W  E+R  YAR RL
Sbjct: 61  HLRQWWVSQFFKRVSRFGLPDTSWRSNSPYYQPPAAVMAVGVEEGKWGKEERREYARKRL 116

Query: 125 RRKRL 129
           RRKRL
Sbjct: 121 RRKRL 116

The following BLAST results are available for this feature:

BLAST of CsaV3_6G050400.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134687.2	2.7e-72	100.00	uncharacterized protein LOC101221431 [Cucumis sativus]	[more]
KAE8647699.1	2.7e-72	100.00	hypothetical protein Csa_004129, partial [Cucumis sativus]	[more]
XP_008439813.1	9.6e-70	96.95	PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo]	[more]
KAA0052667.1	6.9e-68	97.64	uncharacterized protein E6C27_scaffold120G002770 [Cucumis melo var. makuwa] >TYK...	[more]
XP_038883097.1	2.7e-64	91.47	uncharacterized protein LOC120074151 [Benincasa hispida]	[more]

BLAST of CsaV3_6G050400.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G050400.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK88	1.3e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1	[more]
A0A1S3B097	4.7e-70	96.95	uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=...	[more]
A0A5A7UDV0	3.3e-68	97.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EGM1	1.8e-61	88.19	uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]
A0A6J1IR68	2.3e-61	86.26	uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635...	[more]

BLAST of CsaV3_6G050400.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33855.1	1.1e-31	54.40	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38364	OSJNBA0022H21.9 PROTEIN	coord: 5..130

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G050400	CsaV3_6G050400	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G050400.1.exon1	CsaV3_6G050400.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G050400.1.cds1	CsaV3_6G050400.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G050400.1	CsaV3_6G050400.1-protein	polypeptide