CsaV3_5G007960.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G007960.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 4691071 .. 4691250 (-)
Sequence length168
RNA-Seq ExpressionCsaV3_5G007960.1
SyntenyCsaV3_5G007960.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGGGATATTTTGTGGAGGGATAGGCAGAAGAGGAGTTGCCAGAAAGACTGTTCAACGCTGTCTGGAGTTACCAATTGGAGATGTTTTGGCGATTGCCGTAGAGGCACCGACATTGGCACGTGGAGTATCATGTACAAAGGTGAATCACCACAAACTTGGCAATGAAGACGATAACTG

mRNA sequence

ATATGGGATATTTTGTGGAGGGATAGGCAGAAGAGGAGTTGCCAGAAAGACTGTTCAACGCTGTCTGGAGTTACCAATTGGAGATGTTTTGGCGATTGCCGTAGAGGCACCGACATTGGCACGTGGAGTATCATGTACAAAGGTGAATCACCACAAACTTGGCAATGA

Coding sequence (CDS)

ATATGGGATATTTTGTGGAGGGATAGGCAGAAGAGGAGTTGCCAGAAAGACTGTTCAACGCTGTCTGGAGTTACCAATTGGAGATGTTTTGGCGATTGCCGTAGAGGCACCGACATTGGCACGTGGAGTATCATGTACAAAGGTGAATCACCACAAACTTGGCAATGA

Protein sequence

IWDILWRDRQKRSCQKDCSTLSGVTNWRCFGDCRRGTDIGTWSIMYKGESPQTWQ*
Homology
[Close]
BLAST of CsaV3_5G007960.1 vs. NCBI nr
Match: KAE8647985.1 (hypothetical protein Csa_023962, partial [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.5e-27
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  IWDILWRDRQKRSCQKDCSTLSGVTNWRCFGDCRRGTDIGTWSIMYKGESPQTWQ 56
          IWDILWRDRQKRSCQKDCSTLSGVTNWRCFGDCRRGTDIGTWSIMYKGESPQTWQ
Sbjct: 1  IWDILWRDRQKRSCQKDCSTLSGVTNWRCFGDCRRGTDIGTWSIMYKGESPQTWQ 55

The following BLAST results are available for this feature:
BLAST of CsaV3_5G007960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647985.11.5e-27100.00hypothetical protein Csa_023962, partial [Cucumis sativus][more]
BLAST of CsaV3_5G007960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G007960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G007960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_5G007960CsaV3_5G007960gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G007960.1.exon1CsaV3_5G007960.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_5G007960.1.cds1CsaV3_5G007960.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_5G007960.1CsaV3_5G007960.1-proteinpolypeptide