CsaV3_4G024930.1 (mRNA) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGCCCCAGGAGGCGGAAATGGAGGTTTTAGTGCACGCGCCACCGTAGAAGATATCCGGAGACGGCTGCTTCGACCGTCATCGTCACTTCACTCTCCTCCGCCGACGCCGTTATTCTACTTCTTTCGATAATTTCACTCGGTAATGTTTTCAATCTCCTCAGGATCTGAACTTCTATAATTTCTCTTGATTGATTCCAGGTTTTCTCTCGGTAAAAATGCTCAAGACCGAAATTCCTCGCAATTCGAGGCGAATTACATGAGGCTGTCCTGGAGTCGAGAAGCAAAAAAGGGAGAAACATCAAGCAAGGAGAGGAAGCTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCAATTTCTTCGAAGATCAGTCGCTTGGAAAAGATTCCGAAGATAACAGTGAAGAGAAAGGTTAGGGATTTCGAGTGGGATGTCGATGAATTGAGGATGTGGACGGAGGATACGGCAGTTGGAAAGGAGAAAATTGATGCTGTTAATCTTGGTAACGACTCTGATAATCTCATTGAAAACGATGTTGACGGAGATGTTAAGTTTTCTACTCCGTTTCAAAAGTTTGAGCAGAATGCATTGGTACTGTTCGAATTATGAATTGAAATTGAAATATTGACTAACAAATGTACGAACTATATAAAAAGTTGAATAGAAATAAAAACATCATAGGCTTCTGTCTGTTCATTTGCATCTTGTAGTCATACCTGTACCGCTTCTGAGCTGAAGTCTCCATCCCAATCTTCAAATTCCCGGTCCATTTATTTCACATACTTTTCTGTTCAAACTCTGGAAACGCAGCTATTCAGTACTTCTCTCAAAGCACCAAATACATGCTCAATTATGATTGACTGAGAGGACTTTGGAAGATAGCTTGGTGGTGCATTAGATTTGGGAGTCATCTTGGCAGTAAGTAAATCAGGTGCGATGCCATAGGTTGAAAGATAGCTTCTGTTGGGAATGTGTCCTAAATCCCACATTAACTATAACAGGGGAAGATGGTAGGTATAATCGAGGGACTATGTCTTTCATCTTTGTTCATATGAGGTTTTTTGGTGAAACTAAAAATAAATTTTAGAAAATACCCATGTCATTGTGAAAATATGTAGGTATCGGTTGTCCCTAATGAGTCTATGACAGCACGGTTCTCTGAGGCTTTCCTGTGA ATGGAGGCCCCAGGAGGCGGAAATGGAGGTTTTAGTGCACGCGCCACCGTAGAAGATATCCGGAGACGGCTGCTTCGACCGTCATCGTCACTTCACTCTCCTCCGCCGACGCCGTTTTCTCTCGGTAAAAATGCTCAAGACCGAAATTCCTCGCAATTCGAGGCGAATTACATGAGGCTGTCCTGGAGTCGAGAAGCAAAAAAGGGAGAAACATCAAGCAAGGAGAGGAAGCTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCAATTTCTTCGAAGATCAGTCGCTTGGAAAAGATTCCGAAGATAACAGTGAAGAGAAAGGTTAGGGATTTCGAGTGGGATGTCGATGAATTGAGGATGTGGACGGAGGATACGGCAGTTGGAAAGGAGAAAATTGATGCTGTTAATCTTGGTAACGACTCTGATAATCTCATTGAAAACGATGTTGACGGAGATGTTAAGTTTTCTACTCCGTTTCAAAAGTTTGAGCAGAATGCATTGGTATCGGTTGTCCCTAATGAGTCTATGACAGCACGGTTCTCTGAGGCTTTCCTGTGA ATGGAGGCCCCAGGAGGCGGAAATGGAGGTTTTAGTGCACGCGCCACCGTAGAAGATATCCGGAGACGGCTGCTTCGACCGTCATCGTCACTTCACTCTCCTCCGCCGACGCCGTTTTCTCTCGGTAAAAATGCTCAAGACCGAAATTCCTCGCAATTCGAGGCGAATTACATGAGGCTGTCCTGGAGTCGAGAAGCAAAAAAGGGAGAAACATCAAGCAAGGAGAGGAAGCTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCAATTTCTTCGAAGATCAGTCGCTTGGAAAAGATTCCGAAGATAACAGTGAAGAGAAAGGTTAGGGATTTCGAGTGGGATGTCGATGAATTGAGGATGTGGACGGAGGATACGGCAGTTGGAAAGGAGAAAATTGATGCTGTTAATCTTGGTAACGACTCTGATAATCTCATTGAAAACGATGTTGACGGAGATGTTAAGTTTTCTACTCCGTTTCAAAAGTTTGAGCAGAATGCATTGGTATCGGTTGTCCCTAATGAGTCTATGACAGCACGGTTCTCTGAGGCTTTCCTGTGA MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRLSWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALVSVVPNESMTARFSEAFL* Homology
BLAST of CsaV3_4G024930.1 vs. NCBI nr
Match: KAE8649528.1 (hypothetical protein Csa_017968 [Cucumis sativus]) HSP 1 Score: 365.2 bits (936), Expect = 3.5e-97 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
BLAST of CsaV3_4G024930.1 vs. NCBI nr
Match: XP_008447784.1 (PREDICTED: uncharacterized protein LOC103490160 isoform X2 [Cucumis melo] >KAA0032639.1 putative Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK23519.1 putative Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 283.5 bits (724), Expect = 1.3e-72 Identity = 152/177 (85.88%), Postives = 157/177 (88.70%), Query Frame = 0
BLAST of CsaV3_4G024930.1 vs. NCBI nr
Match: XP_038877636.1 (uncharacterized protein LOC120069887 isoform X1 [Benincasa hispida]) HSP 1 Score: 265.0 bits (676), Expect = 4.9e-67 Identity = 138/169 (81.66%), Postives = 151/169 (89.35%), Query Frame = 0
BLAST of CsaV3_4G024930.1 vs. NCBI nr
Match: XP_023518840.1 (uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 248.4 bits (633), Expect = 4.7e-62 Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 0
BLAST of CsaV3_4G024930.1 vs. NCBI nr
Match: XP_022972790.1 (uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima]) HSP 1 Score: 241.1 bits (614), Expect = 7.6e-60 Identity = 126/169 (74.56%), Postives = 143/169 (84.62%), Query Frame = 0
BLAST of CsaV3_4G024930.1 vs. ExPASy TrEMBL
Match: A0A0A0L270 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295500 PE=4 SV=1) HSP 1 Score: 334.7 bits (857), Expect = 2.4e-88 Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0
BLAST of CsaV3_4G024930.1 vs. ExPASy TrEMBL
Match: A0A5A7STW4 (Putative Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00230 PE=4 SV=1) HSP 1 Score: 283.5 bits (724), Expect = 6.4e-73 Identity = 152/177 (85.88%), Postives = 157/177 (88.70%), Query Frame = 0
BLAST of CsaV3_4G024930.1 vs. ExPASy TrEMBL
Match: A0A1S3BHM2 (uncharacterized protein LOC103490160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490160 PE=4 SV=1) HSP 1 Score: 283.5 bits (724), Expect = 6.4e-73 Identity = 152/177 (85.88%), Postives = 157/177 (88.70%), Query Frame = 0
BLAST of CsaV3_4G024930.1 vs. ExPASy TrEMBL
Match: A0A6J1I9M7 (uncharacterized protein LOC111471294 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471294 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 3.7e-60 Identity = 126/169 (74.56%), Postives = 143/169 (84.62%), Query Frame = 0
BLAST of CsaV3_4G024930.1 vs. ExPASy TrEMBL
Match: A0A6J1HFI5 (uncharacterized protein LOC111463108 OS=Cucurbita moschata OX=3662 GN=LOC111463108 PE=4 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 1.4e-59 Identity = 124/169 (73.37%), Postives = 144/169 (85.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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