Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCCCAGGAGGCGGAAATGGAGGTTTTAGTGCACGCGCCACCGTAGAAGATATCCGGAGACGGCTGCTTCGACCGTCATCGTCACTTCACTCTCCTCCGCCGACGCCGTTATTCTACTTCTTTCGATAATTTCACTCGGTAATGTTTTCAATCTCCTCAGGATCTGAACTTCTATAATTTCTCTTGATTGATTCCAGGTTTTCTCTCGGTAAAAATGCTCAAGACCGAAATTCCTCGCAATTCGAGGCGAATTACATGAGGCTGTCCTGGAGTCGAGAAGCAAAAAAGGGAGAAACATCAAGCAAGGAGAGGAAGCTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCAATTTCTTCGAAGATCAGTCGCTTGGAAAAGATTCCGAAGATAACAGTGAAGAGAAAGGTTAGGGATTTCGAGTGGGATGTCGATGAATTGAGGATGTGGACGGAGGATACGGCAGTTGGAAAGGAGAAAATTGATGCTGTTAATCTTGGTAACGACTCTGATAATCTCATTGAAAACGATGTTGACGGAGATGTTAAGTTTTCTACTCCGTTTCAAAAGTTTGAGCAGAATGCATTGGTACTGTTCGAATTATGAATTGAAATTGAAATATTGACTAACAAATGTACGAACTATATAAAAAGTTGAATAGAAATAAAAACATCATAGGCTTCTGTCTGTTCATTTGCATCTTGTAGTCATACCTGTACCGCTTCTGAGCTGAAGTCTCCATCCCAATCTTCAAATTCCCGGTCCATTTATTTCACATACTTTTCTGTTCAAACTCTGGAAACGCAGCTATTCAGTACTTCTCTCAAAGCACCAAATACATGCTCAATTATGATTGACTGAGAGGACTTTGGAAGATAGCTTGGTGGTGCATTAGATTTGGGAGTCATCTTGGCAGTAAGTAAATCAGGTGCGATGCCATAGGTTGAAAGATAGCTTCTGTTGGGAATGTGTCCTAAATCCCACATTAACTATAACAGGGGAAGATGGTAGGTATAATCGAGGGACTATGTCTTTCATCTTTGTTCATATGAGGTTTTTTGGTGAAACTAAAAATAAATTTTAGAAAATACCCATGTCATTGTGAAAATATGTAGGTATCGGTTGTCCCTAATGAGTCTATGACAGCACGGTTCTCTGAGGCTTTCCTGTGA
mRNA sequence
ATGGAGGCCCCAGGAGGCGGAAATGGAGGTTTTAGTGCACGCGCCACCGTAGAAGATATCCGGAGACGGCTGCTTCGACCGTCATCGTCACTTCACTCTCCTCCGCCGACGCCGTTTTCTCTCGGTAAAAATGCTCAAGACCGAAATTCCTCGCAATTCGAGGCGAATTACATGAGGCTGTCCTGGAGTCGAGAAGCAAAAAAGGGAGAAACATCAAGCAAGGAGAGGAAGCTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCAATTTCTTCGAAGATCAGTCGCTTGGAAAAGATTCCGAAGATAACAGTGAAGAGAAAGGTTAGGGATTTCGAGTGGGATGTCGATGAATTGAGGATGTGGACGGAGGATACGGCAGTTGGAAAGGAGAAAATTGATGCTGTTAATCTTGGTAACGACTCTGATAATCTCATTGAAAACGATGTTGACGGAGATGTTAAGTTTTCTACTCCGTTTCAAAAGTTTGAGCAGAATGCATTGGTATCGGTTGTCCCTAATGAGTCTATGACAGCACGGTTCTCTGAGGCTTTCCTGTGA
Coding sequence (CDS)
ATGGAGGCCCCAGGAGGCGGAAATGGAGGTTTTAGTGCACGCGCCACCGTAGAAGATATCCGGAGACGGCTGCTTCGACCGTCATCGTCACTTCACTCTCCTCCGCCGACGCCGTTTTCTCTCGGTAAAAATGCTCAAGACCGAAATTCCTCGCAATTCGAGGCGAATTACATGAGGCTGTCCTGGAGTCGAGAAGCAAAAAAGGGAGAAACATCAAGCAAGGAGAGGAAGCTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCAATTTCTTCGAAGATCAGTCGCTTGGAAAAGATTCCGAAGATAACAGTGAAGAGAAAGGTTAGGGATTTCGAGTGGGATGTCGATGAATTGAGGATGTGGACGGAGGATACGGCAGTTGGAAAGGAGAAAATTGATGCTGTTAATCTTGGTAACGACTCTGATAATCTCATTGAAAACGATGTTGACGGAGATGTTAAGTTTTCTACTCCGTTTCAAAAGTTTGAGCAGAATGCATTGGTATCGGTTGTCCCTAATGAGTCTATGACAGCACGGTTCTCTGAGGCTTTCCTGTGA
Protein sequence
MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRLSWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALVSVVPNESMTARFSEAFL*
Homology
BLAST of CsaV3_4G024930 vs. NCBI nr
Match:
KAE8649528.1 (hypothetical protein Csa_017968 [Cucumis sativus])
HSP 1 Score: 365.2 bits (936), Expect = 3.5e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL
Sbjct: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
Query: 61 SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR
Sbjct: 61 SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALVSVVPNESMTAR 180
MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALVSVVPNESMTAR
Sbjct: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALVSVVPNESMTAR 180
Query: 181 FSEAFL 187
FSEAFL
Sbjct: 181 FSEAFL 186
BLAST of CsaV3_4G024930 vs. NCBI nr
Match:
XP_008447784.1 (PREDICTED: uncharacterized protein LOC103490160 isoform X2 [Cucumis melo] >KAA0032639.1 putative Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK23519.1 putative Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 283.5 bits (724), Expect = 1.3e-72
Identity = 152/177 (85.88%), Postives = 157/177 (88.70%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTP--------FSLGKNAQDRNSSQ 60
MEA GGG+GGFS RATVEDI+RRLLRPSSSLHSPPP P FSLGKNAQDRNSSQ
Sbjct: 1 MEARGGGDGGFSPRATVEDIQRRLLRPSSSLHSPPPPPTPLFYFFQFSLGKNAQDRNSSQ 60
Query: 61 FEANYMRLSWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDF 120
FEANYMRLS SR E SSKERKLEDYLDPVLLSAISSKI+R EKIP+ITVKR+VRDF
Sbjct: 61 FEANYMRLSRSR-----EISSKERKLEDYLDPVLLSAISSKINRFEKIPRITVKREVRDF 120
Query: 121 EWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 170
EW VDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV
Sbjct: 121 EWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 172
BLAST of CsaV3_4G024930 vs. NCBI nr
Match:
XP_038877636.1 (uncharacterized protein LOC120069887 isoform X1 [Benincasa hispida])
HSP 1 Score: 265.0 bits (676), Expect = 4.9e-67
Identity = 138/169 (81.66%), Postives = 151/169 (89.35%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
ME GGG+GGFS RATVEDI+RRL+RPSSSLHS PPTPFS GK AQ R SSQFEA YMRL
Sbjct: 1 MEPRGGGDGGFSPRATVEDIQRRLVRPSSSLHSLPPTPFSRGKAAQGRISSQFEAKYMRL 60
Query: 61 SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
+REAKKGET+SK+RKLEDYLDPVLLSA+SSKISR+EKIPK+TVKR+VRDFEW V+ELR
Sbjct: 61 YQNREAKKGETASKKRKLEDYLDPVLLSAVSSKISRMEKIPKMTVKREVRDFEWPVNELR 120
Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 170
M EDT VGKEKIDAVNLGND+DNLIEN+ DGDVKFSTPFQKFE ALV
Sbjct: 121 MLMEDTTVGKEKIDAVNLGNDTDNLIENNEDGDVKFSTPFQKFEHTALV 169
BLAST of CsaV3_4G024930 vs. NCBI nr
Match:
XP_023518840.1 (uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 248.4 bits (633), Expect = 4.7e-62
Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
ME GGG+GGFS RATVEDI+RRLLRP SS+HSPPPTPFS GK+ Q RNSSQFEAN M L
Sbjct: 1 MEVGGGGDGGFSPRATVEDIQRRLLRP-SSIHSPPPTPFSRGKDVQGRNSSQFEANAMGL 60
Query: 61 SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
REAK+GET+S++RKLEDYLDPVLLSA+SSKISR +K+PK+TVKR+VRDFEW V ELR
Sbjct: 61 YRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQKVPKMTVKREVRDFEWPVAELR 120
Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 170
M +D+ VGK KI+ VNLGNDSDNL END +GDVKFSTPFQKFEQ ALV
Sbjct: 121 MLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFSTPFQKFEQTALV 168
BLAST of CsaV3_4G024930 vs. NCBI nr
Match:
XP_022972790.1 (uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima])
HSP 1 Score: 241.1 bits (614), Expect = 7.6e-60
Identity = 126/169 (74.56%), Postives = 143/169 (84.62%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
ME GGG+GGFS RATVEDI+RRLLRP SS+HSPPPTPFS GK+ Q RNSSQFEAN M L
Sbjct: 1 MEVGGGGDGGFSPRATVEDIQRRLLRP-SSIHSPPPTPFSRGKDVQGRNSSQFEANAMGL 60
Query: 61 SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
REAK+GET+S++RKLEDYLDPVLLSA+SSKISR +K+PK+TVKR+VRDFEW V ELR
Sbjct: 61 YRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQKVPKMTVKREVRDFEWPVAELR 120
Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 170
M +D+ VGK K + VNLGNDSD L END +GDVK STPFQKFEQ ALV
Sbjct: 121 MLMDDSTVGKGKTNTVNLGNDSDYLTENDEEGDVKISTPFQKFEQTALV 168
BLAST of CsaV3_4G024930 vs. ExPASy TrEMBL
Match:
A0A0A0L270 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295500 PE=4 SV=1)
HSP 1 Score: 334.7 bits (857), Expect = 2.4e-88
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL
Sbjct: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
Query: 61 SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR
Sbjct: 61 SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALVSV 172
MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL SV
Sbjct: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALASV 171
BLAST of CsaV3_4G024930 vs. ExPASy TrEMBL
Match:
A0A5A7STW4 (Putative Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00230 PE=4 SV=1)
HSP 1 Score: 283.5 bits (724), Expect = 6.4e-73
Identity = 152/177 (85.88%), Postives = 157/177 (88.70%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTP--------FSLGKNAQDRNSSQ 60
MEA GGG+GGFS RATVEDI+RRLLRPSSSLHSPPP P FSLGKNAQDRNSSQ
Sbjct: 1 MEARGGGDGGFSPRATVEDIQRRLLRPSSSLHSPPPPPTPLFYFFQFSLGKNAQDRNSSQ 60
Query: 61 FEANYMRLSWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDF 120
FEANYMRLS SR E SSKERKLEDYLDPVLLSAISSKI+R EKIP+ITVKR+VRDF
Sbjct: 61 FEANYMRLSRSR-----EISSKERKLEDYLDPVLLSAISSKINRFEKIPRITVKREVRDF 120
Query: 121 EWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 170
EW VDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV
Sbjct: 121 EWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 172
BLAST of CsaV3_4G024930 vs. ExPASy TrEMBL
Match:
A0A1S3BHM2 (uncharacterized protein LOC103490160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490160 PE=4 SV=1)
HSP 1 Score: 283.5 bits (724), Expect = 6.4e-73
Identity = 152/177 (85.88%), Postives = 157/177 (88.70%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTP--------FSLGKNAQDRNSSQ 60
MEA GGG+GGFS RATVEDI+RRLLRPSSSLHSPPP P FSLGKNAQDRNSSQ
Sbjct: 1 MEARGGGDGGFSPRATVEDIQRRLLRPSSSLHSPPPPPTPLFYFFQFSLGKNAQDRNSSQ 60
Query: 61 FEANYMRLSWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDF 120
FEANYMRLS SR E SSKERKLEDYLDPVLLSAISSKI+R EKIP+ITVKR+VRDF
Sbjct: 61 FEANYMRLSRSR-----EISSKERKLEDYLDPVLLSAISSKINRFEKIPRITVKREVRDF 120
Query: 121 EWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 170
EW VDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV
Sbjct: 121 EWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 172
BLAST of CsaV3_4G024930 vs. ExPASy TrEMBL
Match:
A0A6J1I9M7 (uncharacterized protein LOC111471294 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471294 PE=4 SV=1)
HSP 1 Score: 241.1 bits (614), Expect = 3.7e-60
Identity = 126/169 (74.56%), Postives = 143/169 (84.62%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
ME GGG+GGFS RATVEDI+RRLLRP SS+HSPPPTPFS GK+ Q RNSSQFEAN M L
Sbjct: 1 MEVGGGGDGGFSPRATVEDIQRRLLRP-SSIHSPPPTPFSRGKDVQGRNSSQFEANAMGL 60
Query: 61 SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
REAK+GET+S++RKLEDYLDPVLLSA+SSKISR +K+PK+TVKR+VRDFEW V ELR
Sbjct: 61 YRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQKVPKMTVKREVRDFEWPVAELR 120
Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 170
M +D+ VGK K + VNLGNDSD L END +GDVK STPFQKFEQ ALV
Sbjct: 121 MLMDDSTVGKGKTNTVNLGNDSDYLTENDEEGDVKISTPFQKFEQTALV 168
BLAST of CsaV3_4G024930 vs. ExPASy TrEMBL
Match:
A0A6J1HFI5 (uncharacterized protein LOC111463108 OS=Cucurbita moschata OX=3662 GN=LOC111463108 PE=4 SV=1)
HSP 1 Score: 239.2 bits (609), Expect = 1.4e-59
Identity = 124/169 (73.37%), Postives = 144/169 (85.21%), Query Frame = 0
Query: 1 MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
ME GGG+GGFS RA+VEDI+RRLLRP SS+HSPPPTPFS GK+ Q RNSSQFEAN M L
Sbjct: 1 MEVGGGGDGGFSPRASVEDIQRRLLRP-SSIHSPPPTPFSRGKDVQGRNSSQFEANAMGL 60
Query: 61 SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
+EAK+GET+ ++RKLEDYLDPVLLSA+SSKISR +K+PK+ VKR+VRDFEW V ELR
Sbjct: 61 YRKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQKVPKMKVKREVRDFEWPVAELR 120
Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALV 170
M +D+ VGK KI+ VNLGNDSDNL EN+ +GDVKFSTPFQKFEQ ALV
Sbjct: 121 MLMDDSTVGKGKINTVNLGNDSDNLTENNEEGDVKFSTPFQKFEQTALV 168
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8649528.1 | 3.5e-97 | 100.00 | hypothetical protein Csa_017968 [Cucumis sativus] | [more] |
XP_008447784.1 | 1.3e-72 | 85.88 | PREDICTED: uncharacterized protein LOC103490160 isoform X2 [Cucumis melo] >KAA00... | [more] |
XP_038877636.1 | 4.9e-67 | 81.66 | uncharacterized protein LOC120069887 isoform X1 [Benincasa hispida] | [more] |
XP_023518840.1 | 4.7e-62 | 76.33 | uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo] | [more] |
XP_022972790.1 | 7.6e-60 | 74.56 | uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L270 | 2.4e-88 | 99.42 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295500 PE=4 SV=1 | [more] |
A0A5A7STW4 | 6.4e-73 | 85.88 | Putative Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. ma... | [more] |
A0A1S3BHM2 | 6.4e-73 | 85.88 | uncharacterized protein LOC103490160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A6J1I9M7 | 3.7e-60 | 74.56 | uncharacterized protein LOC111471294 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A6J1HFI5 | 1.4e-59 | 73.37 | uncharacterized protein LOC111463108 OS=Cucurbita moschata OX=3662 GN=LOC1114631... | [more] |
Match Name | E-value | Identity | Description | |