CsaV3_3G032270.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G032270.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 27857573 .. 27857930 (-)
Sequence length231
RNA-Seq ExpressionCsaV3_3G032270.1
SyntenyCsaV3_3G032270.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGGCCTGACGAGAAATTGGGCCAGAGTCCAACCGTCTATGGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAAGTAAGCTTCAATTCACTCTCATTCTTTCCACAAATTTCGGTTTTCTGCACTCTTCTTATACTCAATGTACCTTCCAGTTCTTTAATTTTTGATTTCCAGATGCATATAATGCCCTAACTTCCCCGACTTTTATTTTAATCGATCAGCACTTGGAATTTTCTTTTTCGCCCGTAACGAAACGTCTCACTTCTCGGATATTTCAGGTTCCTGGGGCGTTTAA

mRNA sequence

ATGATTGGGCCTGACGAGAAATTGGGCCAGAGTCCAACCGTCTATGGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAAGTAAGCTTCAATTCACTCTCATTCTTTCCACAAATTTCGGTTTTCTGCACTCTTCTTATACTCAATGTACCTTCCAGTTCCTGGGGCGTTTAA

Coding sequence (CDS)

ATGATTGGGCCTGACGAGAAATTGGGCCAGAGTCCAACCGTCTATGGTTTGGAGGGTTGCCTTTCCCGCCATCCACCATTCCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCAATCAAAGTAAGCTTCAATTCACTCTCATTCTTTCCACAAATTTCGGTTTTCTGCACTCTTCTTATACTCAATGTACCTTCCAGTTCCTGGGGCGTTTAA

Protein sequence

MIGPDEKLGQSPTVYGLEGCLSRHPPFLSTSKSRAHSFRSSSLPIKVSFNSLSFFPQISVFCTLLILNVPSSSWGV*
Homology
[Close]
BLAST of CsaV3_3G032270.1 vs. NCBI nr
Match: KGN58603.1 (hypothetical protein Csa_000925 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MIGPDEKLGQSPTVYGLEGCLSRHPPFLSTSKSRAHSFRSSSLPIKVSFNSLSFFPQISV 60
          MIGPDEKLGQSPTVYGLEGCLSRHPPFLSTSKSRAHSFRSSSLPIKVSFNSLSFFPQISV
Sbjct: 1  MIGPDEKLGQSPTVYGLEGCLSRHPPFLSTSKSRAHSFRSSSLPIKVSFNSLSFFPQISV 60

Query: 61 FCTLLILNVPSSSWGV 77
          FCTLLILNVPSSSWGV
Sbjct: 61 FCTLLILNVPSSSWGV 76

[Close]
BLAST of CsaV3_3G032270.1 vs. ExPASy TrEMBL
Match: A0A0A0L9V2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697960 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.4e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MIGPDEKLGQSPTVYGLEGCLSRHPPFLSTSKSRAHSFRSSSLPIKVSFNSLSFFPQISV 60
          MIGPDEKLGQSPTVYGLEGCLSRHPPFLSTSKSRAHSFRSSSLPIKVSFNSLSFFPQISV
Sbjct: 1  MIGPDEKLGQSPTVYGLEGCLSRHPPFLSTSKSRAHSFRSSSLPIKVSFNSLSFFPQISV 60

Query: 61 FCTLLILNVPSSSWGV 77
          FCTLLILNVPSSSWGV
Sbjct: 61 FCTLLILNVPSSSWGV 76

The following BLAST results are available for this feature:
BLAST of CsaV3_3G032270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58603.11.3e-34100.00hypothetical protein Csa_000925 [Cucumis sativus][more]
BLAST of CsaV3_3G032270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G032270.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9V26.4e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697960 PE=4 SV=1[more]
BLAST of CsaV3_3G032270.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G032270CsaV3_3G032270gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G032270.1.exon2CsaV3_3G032270.1.exon2exon
CsaV3_3G032270.1.exon1CsaV3_3G032270.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G032270.1.cds2CsaV3_3G032270.1.cds2CDS
CsaV3_3G032270.1.cds1CsaV3_3G032270.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G032270.1CsaV3_3G032270.1-proteinpolypeptide